Wall clock time and date at job start Tue Mar 31 2020 15:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47412 * 2 1 4 4 N 1.46507 * 109.47051 * 240.00344 * 2 1 3 5 5 C 1.34774 * 119.99895 * 84.99684 * 4 2 1 6 6 O 1.21586 * 120.00436 * 0.02562 * 5 4 2 7 7 C 1.47572 * 119.99599 * 180.02562 * 5 4 2 8 8 C 1.38708 * 120.43321 * 5.90006 * 7 5 4 9 9 C 1.39003 * 120.75058 * 179.97438 * 8 7 5 10 10 C 1.36340 * 121.18803 * 0.02562 * 9 8 7 11 11 C 1.40349 * 119.93528 * 359.97381 * 10 9 8 12 12 C 1.40684 * 122.10668 * 179.97438 * 11 10 9 13 13 C 1.36265 * 118.66462 * 180.02562 * 12 11 10 14 14 N 1.32503 * 121.84461 * 0.02607 * 13 12 11 15 15 C 1.31323 * 122.72068 * 359.97438 * 14 13 12 16 16 C 1.40135 * 119.91224 * 359.74559 * 15 14 13 17 17 C 1.52997 * 109.47343 * 120.00106 * 2 1 3 18 18 C 1.53943 * 113.74177 * 281.81952 * 17 2 1 19 19 N 1.47819 * 86.03694 * 222.08429 * 18 17 2 20 20 C 1.36937 * 134.45425 * 204.64543 * 19 18 17 21 21 H 1.07999 * 119.99390 * 179.86389 * 20 19 18 22 22 C 1.38813 * 120.00007 * 359.86409 * 20 19 18 23 23 N 1.31612 * 120.00025 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99787 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47187 * 59.99907 * 24 22 20 26 26 H 1.48492 * 109.47125 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46677 * 300.00120 * 24 22 20 28 28 C 1.47580 * 91.04733 * 24.54982 * 19 18 17 29 29 H 1.09000 * 109.47046 * 175.01417 * 1 2 3 30 30 H 1.08996 * 109.47114 * 55.01026 * 1 2 3 31 31 H 1.09003 * 109.46677 * 295.01248 * 1 2 3 32 32 H 0.97003 * 119.99337 * 264.99898 * 4 2 1 33 33 H 1.07996 * 119.62406 * 359.97438 * 8 7 5 34 34 H 1.08002 * 119.40572 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.02974 * 179.97438 * 10 9 8 36 36 H 1.07994 * 120.66309 * 0.04889 * 12 11 10 37 37 H 1.08007 * 119.07732 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.04157 * 179.97438 * 15 14 13 39 39 H 1.09003 * 112.94492 * 53.40923 * 17 2 1 40 40 H 1.09007 * 113.76718 * 336.34531 * 18 17 2 41 41 H 1.09003 * 113.76885 * 107.74346 * 18 17 2 42 42 H 0.97000 * 119.99753 * 180.02562 * 23 22 20 43 43 H 1.09005 * 113.76665 * 221.15108 * 28 19 18 44 44 H 1.08999 * 113.87225 * 89.76860 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1617 -2.4117 7 6 2.6384 -0.7140 -3.5623 8 6 2.8544 -2.0840 -3.5435 9 6 3.3166 -2.7461 -4.6750 10 6 3.5712 -2.0724 -5.8326 11 6 3.3663 -0.6854 -5.8954 12 6 3.6146 0.0549 -7.0656 13 6 3.3920 1.3992 -7.0482 14 7 2.9512 2.0208 -5.9643 15 6 2.6989 1.3927 -4.8389 16 6 2.8898 0.0071 -4.7540 17 6 2.0401 -0.7213 1.2492 18 6 1.9746 0.1329 2.5282 19 7 3.3100 -0.4179 2.8415 20 6 4.0196 -0.6145 3.9961 21 1 5.0068 -1.0506 3.9555 22 6 3.4701 -0.2532 5.2185 23 7 2.2668 0.2778 5.2680 24 14 4.4384 -0.5207 6.7935 25 1 5.7083 0.2466 6.7302 26 1 3.6363 -0.0545 7.9529 27 1 4.7407 -1.9663 6.9491 28 6 3.5702 -0.6730 1.4114 29 1 -0.3633 -1.0238 -0.0893 30 1 -0.3633 0.5893 -0.8419 31 1 -0.3633 0.4345 0.9313 32 1 2.2490 -1.6318 -1.1527 33 1 2.6612 -2.6426 -2.6396 34 1 3.4776 -3.8134 -4.6361 35 1 3.9303 -2.6057 -6.7005 36 1 3.9742 -0.4324 -7.9597 37 1 3.5800 1.9740 -7.9431 38 1 2.3411 1.9429 -3.9812 39 1 1.6176 -1.7193 1.3659 40 1 1.9753 1.2066 2.3400 41 1 1.1955 -0.1776 3.2245 42 1 1.8830 0.5306 6.1222 43 1 4.0628 -1.6259 1.2176 44 1 4.0408 0.1623 0.8928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970672214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:54 Heat of formation + Delta-G solvation = 79.026149 kcal Electronic energy + Delta-G solvation = -26548.512321 eV Core-core repulsion = 22853.708999 eV Total energy + Delta-G solvation = -3694.803321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30232 -39.70141 -38.11899 -37.41871 -34.99188 -33.25546 -32.21824 -31.44989 -30.96280 -29.43921 -27.49800 -25.25102 -24.67448 -24.12756 -23.74129 -23.33873 -21.29845 -20.62717 -19.28786 -18.13411 -17.91504 -16.99662 -16.80449 -16.34914 -15.99903 -15.27732 -15.13685 -14.88458 -14.74255 -14.26128 -14.00172 -13.96151 -13.76539 -13.45689 -13.19739 -12.95175 -12.42169 -12.37200 -12.28495 -12.08282 -11.87538 -11.62647 -11.41772 -11.24032 -10.88717 -10.70099 -10.42797 -10.37450 -10.10892 -9.84941 -9.76122 -9.52571 -9.44550 -9.42390 -8.98768 -8.80259 -8.36391 -6.89008 -5.77810 -3.09974 -0.16475 0.59993 1.39208 2.49642 3.04311 3.12603 3.38886 3.43105 3.44403 3.87683 4.21130 4.27783 4.38593 4.44098 4.48664 4.58841 4.64277 4.77969 4.99646 5.07018 5.13134 5.29304 5.37025 5.42070 5.43816 5.51874 5.60224 5.63678 5.75623 5.78809 5.84531 5.96408 6.00927 6.04775 6.22104 6.32309 6.35355 6.41351 6.47977 6.59015 6.61705 6.75383 7.20589 7.33935 7.47632 7.54504 7.84036 7.97115 8.16124 9.03675 9.69955 10.58758 11.39406 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022553 B = 0.002478 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.235207 B =11298.766953 C =11579.612555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.091 0.909 4 N -0.707 5.707 5 C 0.558 3.442 6 O -0.533 6.533 7 C -0.096 4.096 8 C -0.080 4.080 9 C -0.106 4.106 10 C -0.090 4.090 11 C -0.030 4.030 12 C -0.165 4.165 13 C 0.078 3.922 14 N -0.490 5.490 15 C 0.147 3.853 16 C -0.080 4.080 17 C -0.148 4.148 18 C 0.176 3.824 19 N -0.612 5.612 20 C -0.224 4.224 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.125 3.875 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.399 0.601 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.202 0.798 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.255 0.745 43 H 0.040 0.960 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 -6.740 -24.334 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.109 0.891 4 N -0.357 5.357 5 C 0.345 3.655 6 O -0.412 6.412 7 C -0.101 4.101 8 C -0.099 4.099 9 C -0.125 4.125 10 C -0.108 4.108 11 C -0.036 4.036 12 C -0.185 4.185 13 C -0.065 4.065 14 N -0.199 5.199 15 C -0.022 4.022 16 C -0.083 4.083 17 C -0.168 4.168 18 C 0.050 3.950 19 N -0.338 5.338 20 C -0.352 4.352 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.211 1.211 28 C -0.001 4.001 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.169 0.831 38 H 0.218 0.782 39 H 0.107 0.893 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.089 -4.975 -24.154 24.685 hybrid contribution 0.915 -1.573 0.831 2.001 sum -0.174 -6.548 -23.323 24.225 Atomic orbital electron populations 1.22120 0.95161 1.01767 1.02652 1.21216 0.93976 0.97634 0.82672 0.89057 1.46085 1.65939 1.14064 1.09566 1.18060 0.77903 0.86519 0.83005 1.90570 1.50981 1.15460 1.84223 1.19995 1.02412 0.93966 0.93686 1.21476 0.96294 0.93182 0.98962 1.20920 0.98345 1.00705 0.92532 1.21154 0.98387 0.92596 0.98668 1.18169 0.97766 0.94168 0.93454 1.21864 1.03091 0.95660 0.97901 1.22335 0.95238 0.92245 0.96731 1.67692 1.11519 1.40952 0.99696 1.24672 0.90493 0.90763 0.96305 1.18875 1.00733 0.95741 0.92946 1.23875 0.97606 1.00813 0.94494 1.22235 0.89639 0.93914 0.89190 1.45975 1.16334 1.71887 0.99602 1.18970 0.98462 1.34953 0.82818 0.90376 1.24778 0.97063 1.01077 0.97493 1.69790 1.15331 1.47183 1.24545 0.86206 0.78912 0.77819 0.82854 1.21202 1.21524 1.21100 1.22540 0.93003 0.97691 0.86914 0.92758 0.92625 0.90838 0.76618 0.84769 0.84732 0.84764 0.84479 0.83105 0.78245 0.89279 0.95330 0.90648 0.93545 0.94192 0.94981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.46 37.16 0.35 -1.75 16 2 C 0.15 2.16 2.29 -67.93 -0.16 2.01 16 3 H 0.09 1.54 7.48 -51.93 -0.39 1.15 16 4 N -0.71 -8.54 4.89 -54.83 -0.27 -8.81 16 5 C 0.56 7.42 7.70 -12.45 -0.10 7.32 16 6 O -0.53 -8.59 13.14 5.29 0.07 -8.52 16 7 C -0.10 -1.09 5.90 -104.66 -0.62 -1.71 16 8 C -0.08 -0.67 9.51 -39.12 -0.37 -1.04 16 9 C -0.11 -0.73 9.93 -39.98 -0.40 -1.13 16 10 C -0.09 -0.67 9.79 -39.47 -0.39 -1.06 16 11 C -0.03 -0.31 5.74 -106.84 -0.61 -0.92 16 12 C -0.17 -1.46 9.88 -39.37 -0.39 -1.85 16 13 C 0.08 0.80 11.07 -17.97 -0.20 0.60 16 14 N -0.49 -6.54 10.30 -13.21 -0.14 -6.67 16 15 C 0.15 2.02 10.49 -17.06 -0.18 1.84 16 16 C -0.08 -0.98 5.76 -106.59 -0.61 -1.60 16 17 C -0.15 -2.52 3.35 -89.70 -0.30 -2.82 16 18 C 0.18 3.98 6.90 -2.84 -0.02 3.96 16 19 N -0.61 -15.46 3.70 -177.68 -0.66 -16.12 16 20 C -0.22 -6.27 10.70 -15.06 -0.16 -6.44 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.11 11.39 55.49 0.63 -26.48 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.12 2.44 8.38 -2.97 -0.02 2.42 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 32 H 0.40 3.80 6.67 -40.82 -0.27 3.53 16 33 H 0.13 0.81 6.42 -52.49 -0.34 0.47 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.20 2.98 4.98 -52.49 -0.26 2.72 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.03 0.67 8.03 -51.92 -0.42 0.26 16 41 H 0.08 1.88 7.16 -51.93 -0.37 1.51 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -33.70 364.42 -9.97 -43.67 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.81 Total: 2.87 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -4.27 Total: -2.47 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.43 Total: -58.08 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.70 -9.97 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970672214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.699 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds