Wall clock time and date at job start Tue Mar 31 2020 15:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21553 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.47887 * 120.00319 * 180.02562 * 5 4 2 8 8 C 1.40600 * 119.72317 * 359.72590 * 7 5 4 9 9 C 1.35858 * 120.94518 * 179.74735 * 8 7 5 10 10 C 1.40489 * 119.88123 * 0.52584 * 9 8 7 11 11 C 1.40481 * 121.83738 * 179.74218 * 10 9 8 12 12 N 1.31210 * 119.94329 * 180.02562 * 11 10 9 13 13 C 1.32562 * 122.80104 * 359.97438 * 12 11 10 14 14 C 1.36215 * 121.84640 * 359.97438 * 13 12 11 15 15 C 1.40761 * 118.67955 * 0.02562 * 14 13 12 16 16 C 1.38531 * 119.73376 * 180.02562 * 7 5 4 17 17 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 18 18 C 1.53499 * 114.20194 * 175.68147 * 17 2 1 19 19 N 1.47073 * 87.98271 * 220.34656 * 18 17 2 20 20 C 1.36933 * 136.05439 * 207.08381 * 19 18 17 21 21 H 1.07997 * 120.00623 * 7.51587 * 20 19 18 22 22 C 1.38811 * 119.99801 * 187.50516 * 20 19 18 23 23 N 1.31620 * 120.00313 * 174.40470 * 22 20 19 24 24 Si 1.86807 * 120.00107 * 354.40682 * 22 20 19 25 25 H 1.48500 * 109.46966 * 174.95313 * 24 22 20 26 26 H 1.48493 * 109.47091 * 294.95489 * 24 22 20 27 27 H 1.48504 * 109.46855 * 54.95521 * 24 22 20 28 28 C 1.47068 * 87.88530 * 27.34485 * 19 18 17 29 29 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 30 30 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 31 31 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 32 32 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 33 33 H 1.08001 * 119.52640 * 0.02562 * 8 7 5 34 34 H 1.07998 * 120.05473 * 180.28784 * 9 8 7 35 35 H 1.07998 * 120.02566 * 0.04314 * 11 10 9 36 36 H 1.07995 * 119.07289 * 180.02562 * 13 12 11 37 37 H 1.08010 * 120.66272 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.35768 * 359.97438 * 16 7 5 39 39 H 1.08999 * 113.41397 * 308.87998 * 17 2 1 40 40 H 1.08997 * 113.46896 * 105.57052 * 18 17 2 41 41 H 1.09003 * 113.52350 * 335.12944 * 18 17 2 42 42 H 0.97005 * 119.99470 * 355.01014 * 23 22 20 43 43 H 1.08994 * 113.47031 * 87.43931 * 28 19 18 44 44 H 1.09002 * 113.46631 * 217.88470 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8577 1.1611 2.4118 7 6 2.6406 -0.7152 3.5645 8 6 2.9683 -2.0807 3.4962 9 6 3.4286 -2.7442 4.5887 10 6 3.5717 -2.0660 5.8107 11 6 4.0387 -2.7128 6.9670 12 7 4.1576 -2.0433 8.0891 13 6 3.8539 -0.7571 8.1937 14 6 3.3941 -0.0386 7.1317 15 6 3.2397 -0.6882 5.8926 16 6 2.7703 -0.0188 4.7550 17 6 2.0399 -0.7213 -1.2493 18 6 3.5660 -0.6940 -1.4128 19 7 3.3557 -0.4731 -2.8516 20 6 4.0528 -0.7331 -4.0012 21 1 4.9534 -1.3279 -3.9639 22 6 3.6017 -0.2323 -5.2147 23 7 4.3275 -0.3877 -6.3015 24 14 1.9643 0.6624 -5.3052 25 1 1.7699 1.2015 -6.6751 26 1 0.8651 -0.2833 -4.9848 27 1 1.9563 1.7802 -4.3275 28 6 2.0705 0.1558 -2.5118 29 1 -0.3633 0.4403 -0.9286 30 1 -0.3633 -1.0243 0.0831 31 1 -0.3633 0.5841 0.8456 32 1 2.2491 -1.6318 1.1526 33 1 2.8567 -2.6087 2.5607 34 1 3.6804 -3.7921 4.5189 35 1 4.2999 -3.7601 6.9322 36 1 3.9752 -0.2651 9.1474 37 1 3.1527 1.0088 7.2383 38 1 2.5136 1.0291 4.8052 39 1 1.5924 -1.7045 -1.3948 40 1 4.0440 -1.6468 -1.1853 41 1 4.0424 0.1473 -0.9096 42 1 5.2095 -0.7874 -6.2427 43 1 2.1518 1.2215 -2.2980 44 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970698381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:36 Heat of formation + Delta-G solvation = 79.985820 kcal Electronic energy + Delta-G solvation = -26200.172526 eV Core-core repulsion = 22505.410819 eV Total energy + Delta-G solvation = -3694.761707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31047 -40.08757 -38.71297 -37.29641 -35.18727 -33.43927 -32.57345 -31.99974 -30.39838 -30.04618 -27.85989 -25.69617 -25.16243 -24.21184 -23.81039 -22.68793 -21.39677 -20.75377 -19.68351 -18.51743 -18.04565 -17.53207 -17.05730 -16.50744 -16.17718 -15.37119 -15.31249 -15.18389 -14.68340 -14.50119 -14.13295 -14.05356 -13.99692 -13.73452 -13.34914 -13.22730 -13.06290 -12.78476 -12.51084 -12.25202 -12.03054 -11.83335 -11.53780 -11.31658 -11.11914 -10.77020 -10.68121 -10.38453 -10.21441 -10.17286 -9.90329 -9.54757 -9.25175 -9.18756 -9.04078 -8.93145 -8.53394 -7.19821 -6.32169 -3.26458 -0.19663 0.26707 1.42675 2.18935 2.95590 3.10567 3.38175 3.42754 3.63161 3.67851 3.96820 4.07602 4.23378 4.31985 4.43057 4.56942 4.57533 4.64145 4.71461 4.79854 4.91189 5.03129 5.15486 5.24225 5.27768 5.34507 5.43726 5.48975 5.49338 5.59106 5.69945 5.80372 5.83623 5.85390 6.00293 6.11430 6.16194 6.18732 6.21104 6.26627 6.28431 6.32944 6.48493 6.86095 7.07990 7.38692 7.52322 8.05985 8.20734 8.94588 9.47036 10.33218 11.17668 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.002367 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.881532 B =11826.264546 C =12362.055081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 H 0.092 0.908 4 N -0.711 5.711 5 C 0.555 3.445 6 O -0.535 6.535 7 C -0.109 4.109 8 C -0.093 4.093 9 C -0.090 4.090 10 C -0.099 4.099 11 C 0.144 3.856 12 N -0.484 5.484 13 C 0.072 3.928 14 C -0.144 4.144 15 C -0.034 4.034 16 C -0.044 4.044 17 C -0.142 4.142 18 C 0.129 3.871 19 N -0.628 5.628 20 C -0.305 4.305 21 H 0.082 0.918 22 C -0.026 4.026 23 N -0.933 5.933 24 Si 1.069 2.931 25 H -0.294 1.294 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.109 3.891 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.400 0.600 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.261 0.739 43 H 0.047 0.953 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 -4.256 27.745 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.110 0.890 4 N -0.362 5.362 5 C 0.341 3.659 6 O -0.413 6.413 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.109 4.109 10 C -0.101 4.101 11 C -0.028 4.028 12 N -0.192 5.192 13 C -0.071 4.071 14 C -0.164 4.164 15 C -0.040 4.040 16 C -0.063 4.063 17 C -0.162 4.162 18 C 0.003 3.997 19 N -0.356 5.356 20 C -0.431 4.431 21 H 0.100 0.900 22 C -0.224 4.224 23 N -0.575 5.575 24 Si 0.902 3.098 25 H -0.222 1.222 26 H -0.220 1.220 27 H -0.213 1.213 28 C -0.017 4.017 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.118 0.882 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.278 -3.034 27.282 28.158 hybrid contribution 1.028 -0.701 0.257 1.270 sum -5.250 -3.734 27.539 28.282 Atomic orbital electron populations 1.22140 0.95082 1.02054 1.02588 1.21070 0.94025 0.97517 0.82701 0.89029 1.46011 1.66500 1.14147 1.09521 1.18211 0.77965 0.86550 0.83127 1.90783 1.50246 1.15374 1.84932 1.20098 1.02436 0.94382 0.94417 1.21025 0.97652 0.93178 0.99344 1.20899 0.98528 1.00324 0.91186 1.19171 1.00878 0.93935 0.96091 1.23273 0.92987 0.99839 0.86714 1.67400 1.14766 1.09401 1.27658 1.22214 0.96080 0.89823 0.98981 1.22015 1.00320 1.01492 0.92531 1.18150 0.98325 0.93127 0.94350 1.21447 0.94322 1.00466 0.90108 1.23608 0.98549 1.00430 0.93650 1.22304 0.92455 0.98500 0.86466 1.45969 1.19322 1.69234 1.01090 1.20147 1.08518 1.30897 0.83531 0.89984 1.25750 1.05704 0.99807 0.91177 1.70921 1.12015 1.46244 1.28345 0.83728 0.75054 0.76194 0.74839 1.22167 1.22024 1.21294 1.22736 0.90463 0.95733 0.92781 0.91115 0.92461 0.92375 0.76502 0.84897 0.84183 0.81706 0.82780 0.84049 0.83533 0.88225 0.93893 0.94563 0.92944 0.93547 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.15 2.03 2.35 -67.93 -0.16 1.87 16 3 H 0.09 1.42 7.41 -51.93 -0.38 1.04 16 4 N -0.71 -8.06 4.89 -54.73 -0.27 -8.33 16 5 C 0.55 6.99 7.73 -12.31 -0.10 6.89 16 6 O -0.54 -8.56 15.97 5.32 0.08 -8.47 16 7 C -0.11 -1.11 5.87 -104.95 -0.62 -1.73 16 8 C -0.09 -0.73 9.44 -39.54 -0.37 -1.10 16 9 C -0.09 -0.61 9.77 -39.59 -0.39 -1.00 16 10 C -0.10 -0.82 5.75 -106.78 -0.61 -1.43 16 11 C 0.14 1.10 11.04 -16.97 -0.19 0.91 16 12 N -0.48 -4.43 10.29 -13.15 -0.14 -4.56 16 13 C 0.07 0.56 11.07 -17.96 -0.20 0.36 16 14 C -0.14 -1.11 9.88 -39.36 -0.39 -1.50 16 15 C -0.03 -0.31 5.74 -106.83 -0.61 -0.93 16 16 C -0.04 -0.44 9.38 -38.78 -0.36 -0.80 16 17 C -0.14 -2.24 3.52 -89.96 -0.32 -2.56 16 18 C 0.13 2.43 8.12 -8.49 -0.07 2.36 16 19 N -0.63 -15.24 3.69 -184.56 -0.68 -15.93 16 20 C -0.30 -8.77 11.08 -15.06 -0.17 -8.94 16 21 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 22 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 23 N -0.93 -29.49 13.70 55.49 0.76 -28.73 16 24 Si 1.07 26.63 25.16 -169.99 -4.28 22.35 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -6.79 6.51 56.52 0.37 -6.42 16 27 H -0.29 -6.66 6.21 56.52 0.35 -6.31 16 28 C 0.11 2.22 5.27 -8.36 -0.04 2.18 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 3.53 6.58 -40.82 -0.27 3.26 16 33 H 0.13 0.75 6.34 -52.49 -0.33 0.42 16 34 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.15 1.42 7.62 -52.48 -0.40 1.02 16 39 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 42 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 43 H 0.05 0.95 7.50 -51.93 -0.39 0.56 16 44 H 0.06 1.15 4.72 -51.93 -0.25 0.91 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -35.78 362.52 -9.30 -45.08 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.91 Total: 0.96 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -4.34 Total: -7.83 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.32 Total: -57.55 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.28 Total: 22.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.78 -9.30 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970698381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.066 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds