Wall clock time and date at job start Tue Mar 31 2020 15:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21553 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.47887 * 120.00319 * 180.02562 * 5 4 2 8 8 C 1.40600 * 119.72317 * 359.72590 * 7 5 4 9 9 C 1.35858 * 120.94518 * 179.74735 * 8 7 5 10 10 C 1.40489 * 119.88123 * 0.52584 * 9 8 7 11 11 C 1.40481 * 121.83738 * 179.74218 * 10 9 8 12 12 N 1.31210 * 119.94329 * 180.02562 * 11 10 9 13 13 C 1.32562 * 122.80104 * 359.97438 * 12 11 10 14 14 C 1.36215 * 121.84640 * 359.97438 * 13 12 11 15 15 C 1.40761 * 118.67955 * 0.02562 * 14 13 12 16 16 C 1.38531 * 119.73376 * 180.02562 * 7 5 4 17 17 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 18 18 C 1.53499 * 114.20194 * 175.68147 * 17 2 1 19 19 N 1.47073 * 87.98271 * 220.34656 * 18 17 2 20 20 C 1.36933 * 136.05439 * 207.08381 * 19 18 17 21 21 H 1.07997 * 120.00623 * 7.51587 * 20 19 18 22 22 C 1.38811 * 119.99801 * 187.50516 * 20 19 18 23 23 N 1.31620 * 120.00313 * 174.40470 * 22 20 19 24 24 Si 1.86807 * 120.00107 * 354.40682 * 22 20 19 25 25 H 1.48500 * 109.46966 * 174.95313 * 24 22 20 26 26 H 1.48493 * 109.47091 * 294.95489 * 24 22 20 27 27 H 1.48504 * 109.46855 * 54.95521 * 24 22 20 28 28 C 1.47068 * 87.88530 * 27.34485 * 19 18 17 29 29 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 30 30 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 31 31 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 32 32 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 33 33 H 1.08001 * 119.52640 * 0.02562 * 8 7 5 34 34 H 1.07998 * 120.05473 * 180.28784 * 9 8 7 35 35 H 1.07998 * 120.02566 * 0.04314 * 11 10 9 36 36 H 1.07995 * 119.07289 * 180.02562 * 13 12 11 37 37 H 1.08010 * 120.66272 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.35768 * 359.97438 * 16 7 5 39 39 H 1.08999 * 113.41397 * 308.87998 * 17 2 1 40 40 H 1.08997 * 113.46896 * 105.57052 * 18 17 2 41 41 H 1.09003 * 113.52350 * 335.12944 * 18 17 2 42 42 H 0.97005 * 119.99470 * 355.01014 * 23 22 20 43 43 H 1.08994 * 113.47031 * 87.43931 * 28 19 18 44 44 H 1.09002 * 113.46631 * 217.88470 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8577 1.1611 2.4118 7 6 2.6406 -0.7152 3.5645 8 6 2.9683 -2.0807 3.4962 9 6 3.4286 -2.7442 4.5887 10 6 3.5717 -2.0660 5.8107 11 6 4.0387 -2.7128 6.9670 12 7 4.1576 -2.0433 8.0891 13 6 3.8539 -0.7571 8.1937 14 6 3.3941 -0.0386 7.1317 15 6 3.2397 -0.6882 5.8926 16 6 2.7703 -0.0188 4.7550 17 6 2.0399 -0.7213 -1.2493 18 6 3.5660 -0.6940 -1.4128 19 7 3.3557 -0.4731 -2.8516 20 6 4.0528 -0.7331 -4.0012 21 1 4.9534 -1.3279 -3.9639 22 6 3.6017 -0.2323 -5.2147 23 7 4.3275 -0.3877 -6.3015 24 14 1.9643 0.6624 -5.3052 25 1 1.7699 1.2015 -6.6751 26 1 0.8651 -0.2833 -4.9848 27 1 1.9563 1.7802 -4.3275 28 6 2.0705 0.1558 -2.5118 29 1 -0.3633 0.4403 -0.9286 30 1 -0.3633 -1.0243 0.0831 31 1 -0.3633 0.5841 0.8456 32 1 2.2491 -1.6318 1.1526 33 1 2.8567 -2.6087 2.5607 34 1 3.6804 -3.7921 4.5189 35 1 4.2999 -3.7601 6.9322 36 1 3.9752 -0.2651 9.1474 37 1 3.1527 1.0088 7.2383 38 1 2.5136 1.0291 4.8052 39 1 1.5924 -1.7045 -1.3948 40 1 4.0440 -1.6468 -1.1853 41 1 4.0424 0.1473 -0.9096 42 1 5.2095 -0.7874 -6.2427 43 1 2.1518 1.2215 -2.2980 44 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970698381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:34 Heat of formation + Delta-G solvation = 55.436909 kcal Electronic energy + Delta-G solvation = -26201.237047 eV Core-core repulsion = 22505.410819 eV Total energy + Delta-G solvation = -3695.826228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.96908 -41.13061 -40.06844 -38.00092 -36.39569 -34.55543 -34.01250 -32.97651 -31.40482 -30.63198 -29.58293 -27.03468 -26.24839 -25.22480 -24.79045 -23.38181 -22.62874 -21.79328 -21.21376 -19.58805 -19.35854 -18.66981 -17.84029 -17.38584 -17.20744 -16.85622 -16.17346 -15.93388 -15.82053 -15.76825 -15.21227 -15.13746 -14.94544 -14.72262 -14.61655 -14.46943 -13.82771 -13.68591 -13.46489 -13.38469 -13.13665 -13.07916 -13.00079 -12.60644 -12.36129 -12.10682 -12.02989 -11.69016 -11.33865 -11.26336 -11.18529 -11.07056 -10.82209 -10.51980 -10.30687 -10.03189 -9.24250 -9.11938 -8.62690 -5.49221 -0.83089 -0.34431 0.81040 1.38428 1.47597 1.49209 1.67527 2.00630 2.32746 2.54348 2.96463 3.05716 3.17971 3.39469 3.48967 3.53244 3.62840 3.75276 3.82446 3.84001 4.00739 4.08666 4.18404 4.27977 4.29708 4.47144 4.57125 4.60221 4.64761 4.66751 4.73544 4.74987 4.77710 4.85031 4.93231 5.02160 5.04176 5.18309 5.20935 5.26528 5.29403 5.41130 5.48451 5.61576 5.71552 5.93854 6.49082 6.68434 6.95782 7.13969 7.31266 8.25955 8.88749 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.002367 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.881532 B =11826.264546 C =12362.055081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.070 0.930 4 N -0.700 5.700 5 C 0.555 3.445 6 O -0.577 6.577 7 C -0.119 4.119 8 C -0.100 4.100 9 C -0.077 4.077 10 C -0.110 4.110 11 C 0.145 3.855 12 N -0.509 5.509 13 C 0.065 3.935 14 C -0.152 4.152 15 C -0.051 4.051 16 C -0.057 4.057 17 C -0.103 4.103 18 C 0.126 3.874 19 N -0.662 5.662 20 C -0.291 4.291 21 H 0.050 0.950 22 C -0.088 4.088 23 N -0.971 5.971 24 Si 1.107 2.893 25 H -0.306 1.306 26 H -0.262 1.262 27 H -0.264 1.264 28 C 0.097 3.903 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.415 0.585 33 H 0.157 0.843 34 H 0.177 0.823 35 H 0.197 0.803 36 H 0.175 0.825 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.056 0.944 41 H 0.036 0.964 42 H 0.246 0.754 43 H 0.049 0.951 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.017 -5.810 30.006 31.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.088 0.912 4 N -0.352 5.352 5 C 0.343 3.657 6 O -0.457 6.457 7 C -0.124 4.124 8 C -0.118 4.118 9 C -0.096 4.096 10 C -0.112 4.112 11 C -0.027 4.027 12 N -0.217 5.217 13 C -0.077 4.077 14 C -0.172 4.172 15 C -0.056 4.056 16 C -0.076 4.076 17 C -0.123 4.123 18 C 0.001 3.999 19 N -0.391 5.391 20 C -0.419 4.419 21 H 0.068 0.932 22 C -0.279 4.279 23 N -0.616 5.616 24 Si 0.932 3.068 25 H -0.234 1.234 26 H -0.188 1.188 27 H -0.189 1.189 28 C -0.028 4.028 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.253 0.747 33 H 0.175 0.825 34 H 0.194 0.806 35 H 0.213 0.787 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.140 0.860 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.844 -4.627 29.614 30.983 hybrid contribution 1.630 -0.265 -0.292 1.677 sum -6.214 -4.892 29.322 30.369 Atomic orbital electron populations 1.22099 0.93394 1.03345 1.02545 1.20814 0.95191 0.96162 0.82379 0.91225 1.45825 1.66052 1.14748 1.08551 1.18562 0.77168 0.86088 0.83860 1.90763 1.52115 1.17249 1.85606 1.20018 1.03516 0.95582 0.93252 1.21245 0.97695 0.92048 1.00816 1.21293 0.96586 1.01786 0.89947 1.19454 1.00923 0.93704 0.97151 1.23796 0.91841 1.01066 0.85977 1.67455 1.15658 1.10065 1.28522 1.22582 0.95566 0.89725 0.99865 1.22225 1.00378 1.02388 0.92175 1.18347 0.98731 0.93998 0.94500 1.21447 0.95157 1.00324 0.90718 1.23288 0.95976 1.00484 0.92546 1.22499 0.95130 0.98971 0.83295 1.46115 1.21036 1.69940 1.01959 1.20021 1.07275 1.28910 0.85664 0.93168 1.27117 1.08693 1.01047 0.91083 1.71026 1.11996 1.48846 1.29727 0.83311 0.72261 0.76457 0.74752 1.23425 1.18838 1.18928 1.22954 0.88524 0.96461 0.94876 0.90828 0.90392 0.92932 0.74717 0.82544 0.80595 0.78660 0.80812 0.82550 0.84461 0.85988 0.92558 0.94612 0.94535 0.93361 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.48 71.98 0.68 -2.54 16 2 C 0.16 3.87 2.35 44.99 0.11 3.97 16 3 H 0.07 2.05 7.41 -2.39 -0.02 2.04 16 4 N -0.70 -14.03 4.89 -445.35 -2.18 -16.21 16 5 C 0.56 13.27 7.73 86.80 0.67 13.94 16 6 O -0.58 -18.37 15.97 -3.88 -0.06 -18.43 16 7 C -0.12 -2.27 5.87 -20.08 -0.12 -2.39 16 8 C -0.10 -1.25 9.44 22.29 0.21 -1.04 16 9 C -0.08 -0.78 9.77 22.27 0.22 -0.57 16 10 C -0.11 -1.58 5.75 -21.26 -0.12 -1.70 16 11 C 0.14 1.85 11.04 85.33 0.94 2.79 16 12 N -0.51 -8.41 10.29 -195.52 -2.01 -10.42 16 13 C 0.06 0.93 11.07 84.11 0.93 1.86 16 14 C -0.15 -2.23 9.88 22.42 0.22 -2.01 16 15 C -0.05 -0.88 5.74 -21.29 -0.12 -1.00 16 16 C -0.06 -1.12 9.38 22.79 0.21 -0.91 16 17 C -0.10 -2.92 3.52 -10.37 -0.04 -2.95 16 18 C 0.13 4.49 8.12 83.18 0.68 5.17 16 19 N -0.66 -31.34 3.69 -737.83 -2.72 -34.07 16 20 C -0.29 -16.95 11.08 84.03 0.93 -16.02 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 22 C -0.09 -5.28 5.50 84.86 0.47 -4.82 16 23 N -0.97 -63.22 13.70 21.65 0.30 -62.93 16 24 Si 1.11 53.13 25.16 68.60 1.73 54.86 16 25 H -0.31 -15.17 7.11 99.48 0.71 -14.47 16 26 H -0.26 -11.21 6.51 99.48 0.65 -10.57 16 27 H -0.26 -11.56 6.21 99.48 0.62 -10.94 16 28 C 0.10 3.71 5.27 83.27 0.44 4.15 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.41 5.76 6.58 -92.71 -0.61 5.14 16 33 H 0.16 1.11 6.34 -2.91 -0.02 1.09 16 34 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 35 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.14 2.80 7.62 -2.91 -0.02 2.78 16 39 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.31 8.11 -2.39 -0.02 1.29 16 42 H 0.25 16.06 8.73 -92.70 -0.81 15.25 16 43 H 0.05 1.86 7.50 -2.39 -0.02 1.84 16 44 H 0.06 2.15 4.72 -2.39 -0.01 2.14 16 Total: -1.00 -80.72 362.52 1.59 -79.13 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.23 Total: 12.11 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.31 Total: -4.05 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -6.62 Total: -123.62 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.06 Total: -18.43 kcal Atomic # 14 Polarization: 53.13 SS G_CDS: 1.73 Total: 54.86 kcal Total: -80.72 1.59 -79.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970698381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.571 kcal (2) G-P(sol) polarization free energy of solvation -80.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds