Wall clock time and date at job start Tue Mar 31 2020 15:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47719 * 2 1 4 4 N 1.46511 * 109.46894 * 119.99712 * 2 1 3 5 5 C 1.34770 * 119.99692 * 274.99610 * 4 2 1 6 6 O 1.21608 * 120.00574 * 0.02562 * 5 4 2 7 7 C 1.47459 * 119.99863 * 180.02562 * 5 4 2 8 8 C 1.38856 * 120.45878 * 354.13899 * 7 5 4 9 9 C 1.38896 * 120.67951 * 179.97438 * 8 7 5 10 10 C 1.36377 * 121.26769 * 0.02562 * 9 8 7 11 11 C 1.40397 * 119.98803 * 359.97438 * 10 9 8 12 12 C 1.40464 * 121.95059 * 180.02562 * 11 10 9 13 13 N 1.31280 * 119.87733 * 179.97438 * 12 11 10 14 14 C 1.32550 * 122.73653 * 0.02562 * 13 12 11 15 15 C 1.36328 * 121.81941 * 359.97438 * 14 13 12 16 16 C 1.40288 * 118.70503 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47096 * 239.99524 * 2 1 3 18 18 C 1.53950 * 113.74242 * 158.74397 * 17 2 1 19 19 N 1.47811 * 86.03733 * 222.08445 * 18 17 2 20 20 C 1.36933 * 134.45684 * 204.64495 * 19 18 17 21 21 H 1.07999 * 119.99885 * 179.86698 * 20 19 18 22 22 C 1.38813 * 120.00134 * 359.86303 * 20 19 18 23 23 N 1.31618 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47008 * 120.00112 * 24 22 20 27 27 H 1.48503 * 109.46928 * 240.00098 * 24 22 20 28 28 C 1.47583 * 91.05032 * 24.54942 * 19 18 17 29 29 H 1.08993 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47104 * 300.00683 * 1 2 3 31 31 H 1.09001 * 109.47118 * 60.00166 * 1 2 3 32 32 H 0.96991 * 119.99962 * 94.99955 * 4 2 1 33 33 H 1.08001 * 119.65925 * 0.02562 * 8 7 5 34 34 H 1.07994 * 119.36842 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.00780 * 180.02562 * 10 9 8 36 36 H 1.07995 * 120.06174 * 359.96024 * 12 11 10 37 37 H 1.08006 * 119.08917 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.65050 * 180.27786 * 15 14 13 39 39 H 1.08997 * 112.94531 * 290.33503 * 17 2 1 40 40 H 1.09002 * 113.76362 * 336.34960 * 18 17 2 41 41 H 1.09001 * 113.76991 * 107.74256 * 18 17 2 42 42 H 0.96998 * 119.99850 * 180.02562 * 23 22 20 43 43 H 1.09002 * 113.77085 * 221.15556 * 28 19 18 44 44 H 1.08997 * 113.87463 * 89.76533 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1471 -0.0182 2.3571 6 8 1.8575 1.1617 2.4118 7 6 2.6391 -0.7131 3.5611 8 6 2.8572 -2.0843 3.5426 9 6 3.3210 -2.7434 4.6738 10 6 3.5750 -2.0691 5.8317 11 6 3.3686 -0.6818 5.8956 12 6 3.6172 0.0535 7.0663 13 7 3.4105 1.3499 7.0806 14 6 2.9688 2.0170 6.0238 15 6 2.6984 1.3937 4.8419 16 6 2.8953 0.0078 4.7504 17 6 2.0400 -0.7213 -1.2492 18 6 3.4848 -0.3522 -1.6316 19 7 2.9979 -0.3179 -3.0268 20 6 3.5875 -0.4761 -4.2525 21 1 2.9928 -0.4041 -5.1511 22 6 4.9497 -0.7287 -4.3401 23 7 5.6743 -0.8168 -3.2449 24 14 5.7542 -0.9438 -6.0122 25 1 4.7289 -0.8001 -7.0769 26 1 6.8044 0.0904 -6.1928 27 1 6.3685 -2.2932 -6.0960 28 6 1.6214 -0.0473 -2.5684 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1528 33 1 2.6649 -2.6439 2.6391 34 1 3.4837 -3.8103 4.6358 35 1 3.9356 -2.6020 6.6991 36 1 3.9774 -0.4467 7.9531 37 1 2.8190 3.0838 6.1012 38 1 2.3434 1.9566 3.9912 39 1 1.8528 -1.7949 -1.2261 40 1 3.8047 0.6189 -1.2539 41 1 4.2071 -1.1449 -1.4365 42 1 6.6262 -0.9930 -3.3061 43 1 0.8586 -0.5971 -3.1198 44 1 1.3909 1.0131 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970881150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:46 Heat of formation + Delta-G solvation = 78.469619 kcal Electronic energy + Delta-G solvation = -26610.768102 eV Core-core repulsion = 22915.940648 eV Total energy + Delta-G solvation = -3694.827454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23359 -39.65896 -38.14276 -37.32354 -34.98769 -33.08751 -32.34604 -31.53856 -30.67704 -29.44851 -27.55425 -25.20756 -24.69017 -24.12839 -23.63584 -23.32081 -21.32263 -20.56750 -19.25222 -18.21057 -17.84719 -16.86359 -16.66506 -16.33707 -16.01774 -15.30325 -15.06754 -14.90938 -14.75156 -14.23494 -14.03188 -13.84251 -13.71388 -13.39347 -13.12171 -12.81454 -12.46355 -12.32965 -12.25626 -12.09293 -11.85276 -11.70718 -11.34080 -11.32930 -10.93732 -10.74608 -10.40465 -10.33574 -10.06187 -9.87645 -9.79915 -9.48553 -9.37568 -9.33140 -8.93001 -8.82446 -8.28655 -6.89859 -5.78844 -3.11123 -0.09864 0.65442 1.49639 2.52590 3.10254 3.21248 3.37077 3.42475 3.45035 3.92805 4.24942 4.32539 4.38525 4.43037 4.49166 4.66109 4.72279 4.85019 5.03116 5.16666 5.22979 5.23472 5.34401 5.45827 5.50596 5.60445 5.64658 5.70923 5.74079 5.79912 5.89684 5.95980 5.99197 6.13698 6.19875 6.30745 6.35668 6.43753 6.50796 6.58056 6.64656 6.75277 7.20485 7.32803 7.52726 7.54509 7.79776 7.95890 8.22750 9.02619 9.68947 10.57739 11.38236 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.002691 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.142372 B =10404.308737 C =10877.718866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.708 5.708 5 C 0.561 3.439 6 O -0.536 6.536 7 C -0.124 4.124 8 C -0.056 4.056 9 C -0.129 4.129 10 C -0.062 4.062 11 C -0.121 4.121 12 C 0.138 3.862 13 N -0.488 5.488 14 C 0.070 3.930 15 C -0.151 4.151 16 C 0.011 3.989 17 C -0.147 4.147 18 C 0.170 3.830 19 N -0.613 5.613 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.131 3.869 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.163 0.837 37 H 0.154 0.846 38 H 0.177 0.823 39 H 0.088 0.912 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.253 0.747 43 H 0.045 0.955 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -4.136 19.722 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.358 5.358 5 C 0.348 3.652 6 O -0.416 6.416 7 C -0.127 4.127 8 C -0.076 4.076 9 C -0.147 4.147 10 C -0.082 4.082 11 C -0.123 4.123 12 C -0.034 4.034 13 N -0.196 5.196 14 C -0.073 4.073 15 C -0.170 4.170 16 C 0.005 3.995 17 C -0.167 4.167 18 C 0.045 3.955 19 N -0.339 5.339 20 C -0.350 4.350 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.004 3.996 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.171 0.829 38 H 0.194 0.806 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.545 -2.731 20.160 21.699 hybrid contribution 0.580 -1.040 -1.722 2.093 sum -6.966 -3.771 18.439 20.068 Atomic orbital electron populations 1.22133 0.95479 1.01822 1.02230 1.21164 0.93577 0.97684 0.83012 0.89197 1.46036 1.66155 1.14081 1.09504 1.17989 0.77745 0.86465 0.82957 1.90583 1.51066 1.15476 1.84430 1.19935 1.04691 0.93986 0.94069 1.21552 0.94147 0.93162 0.98759 1.20855 1.00309 1.00813 0.92729 1.21177 0.96087 0.92463 0.98480 1.19028 1.02902 0.95076 0.95272 1.23158 0.94576 0.89675 0.95965 1.67392 1.11676 1.09586 1.30934 1.22353 0.96005 1.00425 0.88495 1.22981 0.98522 0.94335 1.01120 1.17939 0.95681 0.93960 0.91920 1.23836 1.01007 0.99649 0.92250 1.22301 0.91303 0.98539 0.83354 1.46004 1.03285 1.82575 1.02017 1.19072 0.91453 1.41493 0.82974 0.90207 1.24786 0.96054 1.02398 0.97288 1.69825 1.06029 1.55257 1.25709 0.86056 0.79318 0.77381 0.83067 1.20458 1.21741 1.21715 1.22482 0.89683 0.96642 0.90778 0.92707 0.92702 0.91263 0.76582 0.84798 0.84735 0.84546 0.82006 0.82869 0.80623 0.89390 0.95605 0.91040 0.93725 0.93727 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.31 37.16 0.35 -1.66 16 2 C 0.15 2.21 2.38 -67.93 -0.16 2.05 16 3 H 0.09 1.54 7.41 -51.93 -0.39 1.15 16 4 N -0.71 -9.23 5.03 -54.87 -0.28 -9.50 16 5 C 0.56 7.99 7.70 -12.51 -0.10 7.89 16 6 O -0.54 -9.01 13.16 5.27 0.07 -8.94 16 7 C -0.12 -1.52 5.90 -104.70 -0.62 -2.14 16 8 C -0.06 -0.52 9.51 -39.11 -0.37 -0.89 16 9 C -0.13 -0.98 9.92 -40.01 -0.40 -1.38 16 10 C -0.06 -0.48 9.79 -39.44 -0.39 -0.87 16 11 C -0.12 -1.27 5.74 -106.88 -0.61 -1.88 16 12 C 0.14 1.37 11.05 -16.95 -0.19 1.19 16 13 N -0.49 -5.88 10.30 -13.11 -0.14 -6.02 16 14 C 0.07 0.84 11.07 -17.93 -0.20 0.64 16 15 C -0.15 -2.00 9.27 -39.50 -0.37 -2.36 16 16 C 0.01 0.14 5.77 -106.55 -0.61 -0.48 16 17 C -0.15 -2.53 3.47 -89.69 -0.31 -2.84 16 18 C 0.17 3.89 7.08 -2.84 -0.02 3.87 16 19 N -0.61 -15.50 3.70 -177.68 -0.66 -16.15 16 20 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -27.18 11.39 55.49 0.63 -26.55 16 24 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 C 0.13 2.56 7.64 -2.97 -0.02 2.53 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 32 H 0.40 4.28 6.67 -40.82 -0.27 4.01 16 33 H 0.13 0.95 6.43 -52.49 -0.34 0.61 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 38 H 0.18 2.54 5.06 -52.48 -0.27 2.27 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 41 H 0.07 1.80 7.16 -51.93 -0.37 1.43 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -34.19 363.54 -9.98 -44.17 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.79 Total: 3.51 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.28 Total: -3.04 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.44 Total: -58.22 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.19 -9.98 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970881150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.635 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds