Wall clock time and date at job start Tue Mar 31 2020 14:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99687 * 2 1 4 4 C 1.54337 * 109.98968 * 238.96681 * 2 1 3 5 5 H 1.09000 * 110.85140 * 100.20063 * 4 2 1 6 6 N 1.46501 * 110.67056 * 337.04447 * 4 2 1 7 7 C 1.36930 * 119.99567 * 93.85097 * 6 4 2 8 8 H 1.08006 * 120.00556 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99874 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99705 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00024 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47070 * 59.99685 * 11 9 7 13 13 H 1.48499 * 109.47065 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47032 * 299.99601 * 11 9 7 15 15 C 1.55153 * 103.01864 * 218.66442 * 4 2 1 16 16 C 1.54911 * 101.58479 * 35.30665 * 15 4 2 17 17 N 1.47016 * 109.88391 * 121.09837 * 2 1 3 18 18 C 1.34773 * 125.64958 * 298.39900 * 17 2 1 19 19 O 1.21592 * 119.99793 * 354.33360 * 18 17 2 20 20 C 1.47554 * 120.00274 * 174.06291 * 18 17 2 21 21 C 1.38697 * 120.38535 * 319.96965 * 20 18 17 22 22 C 1.38969 * 120.53263 * 179.69874 * 21 20 18 23 23 C 1.36217 * 121.23994 * 0.58108 * 22 21 20 24 24 C 1.40708 * 120.19780 * 359.72400 * 23 22 21 25 25 N 1.33687 * 120.94508 * 179.97438 * 24 23 22 26 26 C 1.31067 * 121.34140 * 180.02562 * 25 24 23 27 27 C 1.39340 * 121.71192 * 359.97438 * 26 25 24 28 28 C 1.36678 * 119.86336 * 0.02562 * 27 26 25 29 29 C 1.40466 * 118.16709 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47056 * 301.00946 * 1 2 3 31 31 H 1.08998 * 109.47105 * 61.01143 * 1 2 3 32 32 H 1.09006 * 109.47024 * 181.00685 * 1 2 3 33 33 H 0.97001 * 119.99929 * 273.85695 * 6 4 2 34 34 H 0.97004 * 119.99561 * 180.02562 * 10 9 7 35 35 H 1.09005 * 111.00778 * 277.23654 * 15 4 2 36 36 H 1.09006 * 111.00843 * 153.38275 * 15 4 2 37 37 H 1.09000 * 110.37369 * 204.15257 * 16 15 4 38 38 H 1.09003 * 110.36439 * 81.82789 * 16 15 4 39 39 H 1.08001 * 119.73185 * 359.97438 * 21 20 18 40 40 H 1.08001 * 119.38056 * 180.26044 * 22 21 20 41 41 H 1.07999 * 119.89751 * 179.69944 * 23 22 21 42 42 H 1.08006 * 119.14448 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.06829 * 180.02562 * 27 26 25 44 44 H 1.08003 * 120.91316 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 2.3598 -0.0449 -2.0192 6 7 1.0483 -1.6788 -1.7533 7 6 0.1928 -1.2837 -2.7468 8 1 0.2618 -0.2857 -3.1538 9 6 -0.7640 -2.1657 -3.2303 10 7 -0.8484 -3.3819 -2.7340 11 14 -1.9306 -1.6271 -4.5861 12 1 -1.1488 -1.2500 -5.7910 13 1 -2.8488 -2.7448 -4.9221 14 1 -2.7213 -0.4584 -4.1234 15 6 3.2863 -1.5183 -0.6916 16 6 2.8100 -1.8826 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.2302 0.6775 2.7191 20 6 2.2587 -1.2415 3.5612 21 6 2.1340 -2.6186 3.4522 22 6 2.5637 -3.4499 4.4796 23 6 3.1056 -2.9404 5.6208 24 6 3.2459 -1.5492 5.7778 25 7 3.7751 -1.0331 6.8917 26 6 3.9091 0.2615 7.0464 27 6 3.5088 1.1622 6.0615 28 6 2.9600 0.6993 4.8984 29 6 2.8180 -0.6891 4.7388 30 1 -0.3633 0.5294 0.8808 31 1 -0.3633 0.4980 -0.8989 32 1 -0.3633 -1.0276 0.0181 33 1 0.9860 -2.5750 -1.3875 34 1 -1.5168 -3.9983 -3.0721 35 1 4.1670 -0.8768 -0.6579 36 1 3.4807 -2.4155 -1.2793 37 1 3.6655 -2.0413 1.3931 38 1 2.1802 -2.7719 0.7113 39 1 1.7034 -3.0484 2.5599 40 1 2.4615 -4.5198 4.3733 41 1 3.4280 -3.6063 6.4075 42 1 4.3417 0.6400 7.9608 43 1 3.6319 2.2238 6.2167 44 1 2.6442 1.3821 4.1236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986626781.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:58 Heat of formation + Delta-G solvation = 46.002689 kcal Electronic energy + Delta-G solvation = -27510.399626 eV Core-core repulsion = 23814.164300 eV Total energy + Delta-G solvation = -3696.235326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18077 -39.77337 -37.60573 -36.97187 -34.08398 -33.51428 -31.76022 -30.85382 -30.73510 -30.19743 -28.61447 -25.41787 -24.74223 -23.85983 -23.56248 -23.30026 -21.91118 -19.98089 -18.97161 -18.24014 -17.56708 -17.13658 -16.98832 -16.29644 -15.90821 -15.12222 -14.81666 -14.60768 -14.46939 -14.14322 -13.89239 -13.66709 -13.59568 -13.41143 -13.12649 -12.80029 -12.73900 -12.45552 -12.14733 -11.86266 -11.58010 -11.50786 -11.33420 -10.93433 -10.89384 -10.68861 -10.65671 -10.53256 -10.22229 -10.11835 -10.04171 -9.71973 -9.39486 -9.00419 -8.97906 -8.45736 -8.28286 -7.09814 -5.87074 -3.16548 0.06425 0.64399 1.64797 2.58083 3.04381 3.19681 3.38742 3.44066 3.44452 3.95911 4.08075 4.37910 4.50672 4.57418 4.65789 4.73899 4.83291 4.90926 4.96997 5.12702 5.20049 5.25578 5.36021 5.52412 5.60770 5.62207 5.66925 5.72617 5.80402 5.81611 5.93768 6.03074 6.13070 6.15417 6.18952 6.23833 6.33138 6.38649 6.51017 6.60570 6.61323 6.77394 6.96554 7.29756 7.61186 7.70167 7.77689 8.29714 8.32043 9.42636 9.95400 10.30800 11.34867 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.003088 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.027172 B = 9065.836346 C = 9496.224156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.108 3.892 3 H 0.062 0.938 4 C 0.171 3.829 5 H 0.075 0.925 6 N -0.708 5.708 7 C -0.241 4.241 8 H 0.071 0.929 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.145 4.145 16 C 0.099 3.901 17 N -0.594 5.594 18 C 0.569 3.431 19 O -0.539 6.539 20 C -0.098 4.098 21 C -0.079 4.079 22 C -0.104 4.104 23 C -0.078 4.078 24 C 0.121 3.879 25 N -0.477 5.477 26 C 0.130 3.870 27 C -0.180 4.180 28 C -0.047 4.047 29 C -0.069 4.069 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.159 0.841 43 H 0.138 0.862 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.688 2.888 15.509 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.003 3.997 3 H 0.080 0.920 4 C 0.058 3.942 5 H 0.093 0.907 6 N -0.348 5.348 7 C -0.372 4.372 8 H 0.089 0.911 9 C -0.204 4.204 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.184 4.184 16 C -0.023 4.023 17 N -0.326 5.326 18 C 0.358 3.642 19 O -0.418 6.418 20 C -0.102 4.102 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.096 4.096 24 C 0.000 4.000 25 N -0.185 5.185 26 C -0.042 4.042 27 C -0.199 4.199 28 C -0.073 4.073 29 C -0.071 4.071 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.176 0.824 43 H 0.156 0.844 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.486 2.838 16.128 20.003 hybrid contribution -1.080 0.491 -1.204 1.691 sum 10.406 3.330 14.924 18.496 Atomic orbital electron populations 1.21785 0.93574 1.03319 1.00541 1.22805 0.96223 0.95553 0.85118 0.92044 1.21254 0.88450 0.92305 0.92190 0.90712 1.42324 1.36598 1.12861 1.42983 1.19135 1.09415 0.97640 1.11017 0.91090 1.24717 0.99646 0.96015 1.00050 1.69635 1.37423 1.05598 1.45126 0.86302 0.80810 0.77340 0.81934 1.21232 1.21733 1.21184 1.23153 0.98588 1.01898 0.94768 1.22449 0.94703 0.88982 0.96215 1.48556 1.51143 1.28162 1.04786 1.17728 0.79704 0.85304 0.81473 1.90737 1.43032 1.24766 1.83290 1.19978 1.01782 0.94052 0.94398 1.21643 0.96601 0.92004 0.99501 1.20882 0.97883 1.00640 0.92963 1.20943 0.97959 0.92693 0.98039 1.18805 0.97342 0.94099 0.89798 1.68039 1.14020 1.14827 1.21632 1.22962 0.94418 0.88484 0.98381 1.21959 1.01272 1.01670 0.95047 1.21880 0.92766 0.94609 0.98028 1.18593 0.99840 0.94459 0.94238 0.94356 0.91423 0.91158 0.78084 0.93370 0.90965 0.89324 0.91290 0.90943 0.84215 0.84443 0.84427 0.82380 0.84426 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.05 37.16 0.30 -2.41 16 2 C 0.11 1.92 3.41 -66.95 -0.23 1.69 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.17 3.02 3.52 -66.09 -0.23 2.79 16 5 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 6 N -0.71 -15.70 3.84 -51.64 -0.20 -15.90 16 7 C -0.24 -6.09 8.44 -15.06 -0.13 -6.21 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 9 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 10 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 11 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 C -0.14 -2.04 6.68 -24.58 -0.16 -2.20 16 16 C 0.10 1.35 5.24 -2.53 -0.01 1.34 16 17 N -0.59 -9.55 3.06 -164.22 -0.50 -10.06 16 18 C 0.57 9.57 6.84 -12.46 -0.09 9.49 16 19 O -0.54 -10.45 14.03 5.28 0.07 -10.37 16 20 C -0.10 -1.42 5.34 -104.65 -0.56 -1.98 16 21 C -0.08 -0.96 8.25 -39.14 -0.32 -1.29 16 22 C -0.10 -1.05 9.92 -40.04 -0.40 -1.45 16 23 C -0.08 -0.85 9.96 -39.38 -0.39 -1.24 16 24 C 0.12 1.59 6.60 -84.88 -0.56 1.03 16 25 N -0.48 -6.00 10.34 -10.99 -0.11 -6.11 16 26 C 0.13 1.32 11.15 -17.47 -0.19 1.13 16 27 C -0.18 -1.85 10.04 -39.74 -0.40 -2.25 16 28 C -0.05 -0.62 9.22 -39.31 -0.36 -0.98 16 29 C -0.07 -0.97 5.76 -106.53 -0.61 -1.58 16 30 H 0.04 0.78 7.09 -51.93 -0.37 0.41 16 31 H 0.07 1.42 7.39 -51.93 -0.38 1.04 16 32 H 0.07 1.59 7.37 -51.93 -0.38 1.21 16 33 H 0.38 9.12 7.84 -40.82 -0.32 8.80 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.81 7.42 -51.93 -0.39 0.42 16 38 H 0.07 1.01 7.03 -51.93 -0.36 0.65 16 39 H 0.14 1.65 6.13 -52.49 -0.32 1.33 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.15 2.16 5.96 -52.48 -0.31 1.85 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -30.80 356.21 -9.88 -40.68 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.76 Total: 10.02 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -4.45 Total: -4.44 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.09 Total: -57.68 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.80 -9.88 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986626781.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.687 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds