Wall clock time and date at job start Tue Mar 31 2020 14:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99687 * 2 1 4 4 C 1.54337 * 109.98968 * 238.96681 * 2 1 3 5 5 H 1.09000 * 110.85140 * 100.20063 * 4 2 1 6 6 N 1.46501 * 110.67056 * 337.04447 * 4 2 1 7 7 C 1.36930 * 119.99567 * 93.85097 * 6 4 2 8 8 H 1.08006 * 120.00556 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99874 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99705 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00024 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47070 * 59.99685 * 11 9 7 13 13 H 1.48499 * 109.47065 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47032 * 299.99601 * 11 9 7 15 15 C 1.55153 * 103.01864 * 218.66442 * 4 2 1 16 16 C 1.54911 * 101.58479 * 35.30665 * 15 4 2 17 17 N 1.47016 * 109.88391 * 121.09837 * 2 1 3 18 18 C 1.34773 * 125.64958 * 298.39900 * 17 2 1 19 19 O 1.21592 * 119.99793 * 354.33360 * 18 17 2 20 20 C 1.47554 * 120.00274 * 174.06291 * 18 17 2 21 21 C 1.38697 * 120.38535 * 319.96965 * 20 18 17 22 22 C 1.38969 * 120.53263 * 179.69874 * 21 20 18 23 23 C 1.36217 * 121.23994 * 0.58108 * 22 21 20 24 24 C 1.40708 * 120.19780 * 359.72400 * 23 22 21 25 25 N 1.33687 * 120.94508 * 179.97438 * 24 23 22 26 26 C 1.31067 * 121.34140 * 180.02562 * 25 24 23 27 27 C 1.39340 * 121.71192 * 359.97438 * 26 25 24 28 28 C 1.36678 * 119.86336 * 0.02562 * 27 26 25 29 29 C 1.40466 * 118.16709 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47056 * 301.00946 * 1 2 3 31 31 H 1.08998 * 109.47105 * 61.01143 * 1 2 3 32 32 H 1.09006 * 109.47024 * 181.00685 * 1 2 3 33 33 H 0.97001 * 119.99929 * 273.85695 * 6 4 2 34 34 H 0.97004 * 119.99561 * 180.02562 * 10 9 7 35 35 H 1.09005 * 111.00778 * 277.23654 * 15 4 2 36 36 H 1.09006 * 111.00843 * 153.38275 * 15 4 2 37 37 H 1.09000 * 110.37369 * 204.15257 * 16 15 4 38 38 H 1.09003 * 110.36439 * 81.82789 * 16 15 4 39 39 H 1.08001 * 119.73185 * 359.97438 * 21 20 18 40 40 H 1.08001 * 119.38056 * 180.26044 * 22 21 20 41 41 H 1.07999 * 119.89751 * 179.69944 * 23 22 21 42 42 H 1.08006 * 119.14448 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.06829 * 180.02562 * 27 26 25 44 44 H 1.08003 * 120.91316 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 2.3598 -0.0449 -2.0192 6 7 1.0483 -1.6788 -1.7533 7 6 0.1928 -1.2837 -2.7468 8 1 0.2618 -0.2857 -3.1538 9 6 -0.7640 -2.1657 -3.2303 10 7 -0.8484 -3.3819 -2.7340 11 14 -1.9306 -1.6271 -4.5861 12 1 -1.1488 -1.2500 -5.7910 13 1 -2.8488 -2.7448 -4.9221 14 1 -2.7213 -0.4584 -4.1234 15 6 3.2863 -1.5183 -0.6916 16 6 2.8100 -1.8826 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.2302 0.6775 2.7191 20 6 2.2587 -1.2415 3.5612 21 6 2.1340 -2.6186 3.4522 22 6 2.5637 -3.4499 4.4796 23 6 3.1056 -2.9404 5.6208 24 6 3.2459 -1.5492 5.7778 25 7 3.7751 -1.0331 6.8917 26 6 3.9091 0.2615 7.0464 27 6 3.5088 1.1622 6.0615 28 6 2.9600 0.6993 4.8984 29 6 2.8180 -0.6891 4.7388 30 1 -0.3633 0.5294 0.8808 31 1 -0.3633 0.4980 -0.8989 32 1 -0.3633 -1.0276 0.0181 33 1 0.9860 -2.5750 -1.3875 34 1 -1.5168 -3.9983 -3.0721 35 1 4.1670 -0.8768 -0.6579 36 1 3.4807 -2.4155 -1.2793 37 1 3.6655 -2.0413 1.3931 38 1 2.1802 -2.7719 0.7113 39 1 1.7034 -3.0484 2.5599 40 1 2.4615 -4.5198 4.3733 41 1 3.4280 -3.6063 6.4075 42 1 4.3417 0.6400 7.9608 43 1 3.6319 2.2238 6.2167 44 1 2.6442 1.3821 4.1236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986626781.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:57 Heat of formation + Delta-G solvation = 27.829380 kcal Electronic energy + Delta-G solvation = -27511.187680 eV Core-core repulsion = 23814.164300 eV Total energy + Delta-G solvation = -3697.023380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17115 -40.98862 -38.93411 -37.92923 -35.78137 -34.45964 -33.37925 -32.24213 -31.59865 -31.44231 -30.09524 -26.92906 -25.77354 -25.34776 -24.65311 -24.49763 -23.07391 -21.30287 -20.16084 -19.43261 -19.19406 -18.18016 -17.93085 -17.60050 -17.17249 -16.37892 -16.21937 -15.67527 -15.58948 -15.30999 -15.19911 -15.13053 -15.03279 -14.59107 -14.30736 -14.12697 -13.98144 -13.63922 -13.21931 -13.10005 -13.00907 -12.78405 -12.72969 -12.45171 -12.37061 -12.28540 -12.21477 -11.83346 -11.71174 -11.60969 -11.50611 -11.20387 -10.92077 -10.45228 -9.84246 -9.69125 -9.32073 -8.99048 -7.90875 -5.17437 -0.85764 -0.22439 0.66813 1.49614 1.50748 1.55720 1.60094 1.88905 2.03229 2.58084 3.04764 3.27526 3.30747 3.43601 3.66846 3.71005 3.76858 3.82639 3.89189 3.99577 4.03280 4.12854 4.22791 4.35829 4.39681 4.45567 4.52035 4.58516 4.69372 4.75862 4.77179 4.82552 4.98045 5.00846 5.07239 5.09496 5.22027 5.24675 5.28144 5.29135 5.43581 5.50535 5.53790 5.59799 5.76696 6.30451 6.49933 6.83733 7.02289 7.39240 8.10914 8.35577 9.31663 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.003088 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.027172 B = 9065.836346 C = 9496.224156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.114 3.886 3 H 0.066 0.934 4 C 0.165 3.835 5 H 0.079 0.921 6 N -0.715 5.715 7 C -0.227 4.227 8 H 0.075 0.925 9 C -0.067 4.067 10 N -0.964 5.964 11 Si 0.959 3.041 12 H -0.278 1.278 13 H -0.300 1.300 14 H -0.285 1.285 15 C -0.131 4.131 16 C 0.101 3.899 17 N -0.595 5.595 18 C 0.567 3.433 19 O -0.575 6.575 20 C -0.125 4.125 21 C -0.072 4.072 22 C -0.099 4.099 23 C -0.071 4.071 24 C 0.101 3.899 25 N -0.491 5.491 26 C 0.131 3.869 27 C -0.164 4.164 28 C -0.077 4.077 29 C -0.085 4.085 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.376 0.624 34 H 0.249 0.751 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.141 0.859 40 H 0.172 0.828 41 H 0.161 0.839 42 H 0.199 0.801 43 H 0.169 0.831 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.787 2.766 17.066 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.008 3.992 3 H 0.085 0.915 4 C 0.054 3.946 5 H 0.097 0.903 6 N -0.353 5.353 7 C -0.358 4.358 8 H 0.093 0.907 9 C -0.260 4.260 10 N -0.614 5.614 11 Si 0.789 3.211 12 H -0.204 1.204 13 H -0.227 1.227 14 H -0.212 1.212 15 C -0.169 4.169 16 C -0.021 4.021 17 N -0.326 5.326 18 C 0.357 3.643 19 O -0.457 6.457 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.119 4.119 23 C -0.090 4.090 24 C -0.020 4.020 25 N -0.200 5.200 26 C -0.041 4.041 27 C -0.183 4.183 28 C -0.103 4.103 29 C -0.088 4.088 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.209 0.791 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.190 0.810 41 H 0.179 0.821 42 H 0.216 0.784 43 H 0.186 0.814 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.629 2.739 17.685 22.495 hybrid contribution -1.663 0.633 -1.549 2.359 sum 11.967 3.373 16.136 20.370 Atomic orbital electron populations 1.21586 0.95703 1.00979 0.99431 1.22549 0.94315 0.96156 0.86153 0.91549 1.21444 0.88894 0.92197 0.92083 0.90279 1.42405 1.37231 1.13153 1.42507 1.19444 1.08755 0.97301 1.10351 0.90716 1.25341 1.01696 0.96410 1.02564 1.69766 1.38321 1.06538 1.46819 0.85433 0.79103 0.76429 0.80122 1.20431 1.22709 1.21168 1.23088 0.97531 1.01949 0.94362 1.22567 0.95179 0.87826 0.96491 1.48557 1.51212 1.28619 1.04258 1.18169 0.78958 0.85148 0.82009 1.90703 1.44615 1.26469 1.83869 1.19813 1.04342 0.94540 0.94152 1.21786 0.95769 0.91323 1.00170 1.21186 0.96813 1.02010 0.91850 1.21288 0.96838 0.92164 0.98704 1.19121 0.97947 0.95033 0.89851 1.68112 1.14444 1.16048 1.21355 1.23638 0.93273 0.87748 0.99454 1.22320 0.98961 1.03424 0.93643 1.21862 0.94947 0.94374 0.99111 1.18754 1.00408 0.95093 0.94503 0.95202 0.92684 0.93921 0.79081 0.94260 0.88289 0.88915 0.88661 0.91289 0.84125 0.81019 0.82114 0.78436 0.81368 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 8.05 71.98 0.58 -4.38 16 2 C 0.11 4.06 3.41 45.35 0.15 4.21 16 3 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.16 5.71 3.52 46.18 0.16 5.87 16 5 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 6 N -0.71 -31.78 3.84 -317.31 -1.22 -33.00 16 7 C -0.23 -11.49 8.44 84.04 0.71 -10.78 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 9 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 10 N -0.96 -55.73 13.06 21.65 0.28 -55.45 16 11 Si 0.96 44.68 29.55 68.60 2.03 46.71 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 15 C -0.13 -3.40 6.68 31.99 0.21 -3.19 16 16 C 0.10 2.62 5.24 86.86 0.45 3.07 16 17 N -0.60 -19.05 3.06 -791.72 -2.43 -21.47 16 18 C 0.57 19.42 6.84 86.70 0.59 20.02 16 19 O -0.57 -23.21 14.03 -4.00 -0.06 -23.27 16 20 C -0.12 -3.60 5.34 -19.88 -0.11 -3.70 16 21 C -0.07 -1.67 8.25 22.55 0.19 -1.49 16 22 C -0.10 -1.76 9.92 21.97 0.22 -1.54 16 23 C -0.07 -1.39 9.96 22.40 0.22 -1.16 16 24 C 0.10 2.50 6.60 40.27 0.27 2.77 16 25 N -0.49 -11.25 10.34 -188.68 -1.95 -13.20 16 26 C 0.13 2.31 11.15 85.07 0.95 3.26 16 27 C -0.16 -3.09 10.04 22.17 0.22 -2.86 16 28 C -0.08 -2.03 9.22 22.45 0.21 -1.83 16 29 C -0.08 -2.37 5.76 -21.10 -0.12 -2.49 16 30 H 0.03 1.26 7.09 -2.39 -0.02 1.24 16 31 H 0.05 2.38 7.39 -2.39 -0.02 2.36 16 32 H 0.04 1.99 7.37 -2.38 -0.02 1.98 16 33 H 0.38 18.04 7.84 -92.71 -0.73 17.32 16 34 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.10 2.01 7.42 -2.39 -0.02 1.99 16 38 H 0.07 1.86 7.03 -2.39 -0.02 1.84 16 39 H 0.14 3.19 6.13 -2.91 -0.02 3.17 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 44 H 0.13 3.98 5.96 -2.91 -0.02 3.96 16 Total: -1.00 -69.03 356.21 2.34 -66.68 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.31 Total: 30.40 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.38 Total: 2.59 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.31 Total: -123.12 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.03 2.34 -66.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986626781.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.511 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds