Wall clock time and date at job start Tue Mar 31 2020 14:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.99667 * 2 1 4 4 C 1.54311 * 109.77655 * 121.15750 * 2 1 3 5 5 H 1.09001 * 110.92521 * 23.46596 * 4 2 1 6 6 N 1.46499 * 110.58872 * 260.14390 * 4 2 1 7 7 C 1.36941 * 119.99800 * 160.19598 * 6 4 2 8 8 H 1.08002 * 120.00068 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99741 * 180.02562 * 7 6 4 10 10 N 1.31622 * 120.00343 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99801 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47254 * 89.99687 * 11 9 7 13 13 H 1.48498 * 109.47026 * 209.99869 * 11 9 7 14 14 H 1.48504 * 109.47051 * 329.99824 * 11 9 7 15 15 C 1.55152 * 102.86443 * 141.88587 * 4 2 1 16 16 C 1.54913 * 101.58286 * 324.30115 * 15 4 2 17 17 N 1.47026 * 109.87898 * 238.90825 * 2 1 3 18 18 C 1.34766 * 125.65130 * 61.67716 * 17 2 1 19 19 O 1.21591 * 120.00339 * 4.98708 * 18 17 2 20 20 C 1.47553 * 120.00061 * 184.98411 * 18 17 2 21 21 C 1.38697 * 120.38566 * 39.96253 * 20 18 17 22 22 C 1.38973 * 120.53278 * 180.02562 * 21 20 18 23 23 C 1.36205 * 121.24383 * 359.97438 * 22 21 20 24 24 C 1.40718 * 120.19953 * 359.95278 * 23 22 21 25 25 N 1.33686 * 120.94590 * 180.02562 * 24 23 22 26 26 C 1.31063 * 121.34231 * 180.02562 * 25 24 23 27 27 C 1.39349 * 121.70841 * 0.05252 * 26 25 24 28 28 C 1.36674 * 119.86307 * 359.92128 * 27 26 25 29 29 C 1.40468 * 118.17454 * 0.04887 * 28 27 26 30 30 H 1.09002 * 109.46932 * 179.64317 * 1 2 3 31 31 H 1.09007 * 109.46874 * 299.63937 * 1 2 3 32 32 H 1.08997 * 109.47195 * 59.63752 * 1 2 3 33 33 H 0.97005 * 120.00460 * 340.19165 * 6 4 2 34 34 H 0.96996 * 119.99949 * 180.02562 * 10 9 7 35 35 H 1.08999 * 111.00550 * 206.23301 * 15 4 2 36 36 H 1.08996 * 111.04186 * 82.39423 * 15 4 2 37 37 H 1.08994 * 110.36580 * 278.17585 * 16 15 4 38 38 H 1.08997 * 110.37019 * 155.84931 * 16 15 4 39 39 H 1.07994 * 119.73239 * 0.02562 * 21 20 18 40 40 H 1.08001 * 119.37739 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.90181 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.14898 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.06615 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.91047 * 180.31963 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0521 -0.7513 1.2426 5 1 1.3050 -1.4513 1.6168 6 7 2.4473 0.1952 2.2886 7 6 2.5497 -0.2240 3.5882 8 1 2.3387 -1.2523 3.8422 9 6 2.9237 0.6730 4.5794 10 7 3.1804 1.9264 4.2701 11 14 3.0627 0.1014 6.3523 12 1 4.4442 -0.3777 6.6111 13 1 2.7522 1.2325 7.2629 14 1 2.1020 -1.0053 6.5923 15 6 3.2889 -1.5101 0.6932 16 6 2.8191 -1.8763 -0.7369 17 7 2.0299 -0.7140 -1.1840 18 6 1.8084 -0.3612 -2.4657 19 8 1.2216 0.6732 -2.7188 20 6 2.2781 -1.2302 -3.5618 21 6 2.1743 -2.6093 -3.4573 22 6 2.6161 -3.4307 -4.4876 23 6 3.1597 -2.9098 -5.6227 24 6 3.2836 -1.5162 -5.7732 25 7 3.8143 -0.9889 -6.8811 26 6 3.9338 0.3079 -7.0293 27 6 3.5163 1.1993 -6.0430 28 6 2.9645 0.7247 -4.8861 29 6 2.8385 -0.6659 -4.7332 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3633 0.5083 0.8933 32 1 -0.3633 0.5194 -0.8867 33 1 2.6365 1.1189 2.0606 34 1 3.4420 2.5530 4.9627 35 1 3.4897 -2.4065 1.2799 36 1 4.1643 -0.8614 0.6627 37 1 2.1971 -2.7710 -0.7143 38 1 3.6776 -2.0264 -1.3914 39 1 1.7468 -3.0484 -2.5681 40 1 2.5268 -4.5022 -4.3864 41 1 3.4964 -3.5683 -6.4097 42 1 4.3682 0.6956 -7.9389 43 1 3.6278 2.2631 -6.1928 44 1 2.6305 1.4005 -4.1128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986626784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:00 Heat of formation + Delta-G solvation = 42.447294 kcal Electronic energy + Delta-G solvation = -27100.239822 eV Core-core repulsion = 23403.850323 eV Total energy + Delta-G solvation = -3696.389500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26980 -39.86949 -37.61872 -37.06930 -34.21310 -33.59552 -31.90556 -31.02096 -30.81352 -30.28586 -28.93710 -25.33941 -24.89266 -23.94158 -23.66483 -23.03956 -21.96495 -20.21781 -19.29518 -18.40977 -17.40094 -17.20883 -17.08959 -16.46389 -15.97098 -15.25398 -14.92974 -14.77248 -14.50576 -14.23366 -14.00143 -13.70259 -13.54334 -13.43299 -13.18045 -12.96019 -12.69403 -12.37553 -12.22691 -12.02786 -11.83341 -11.71595 -11.52872 -11.21951 -11.07318 -10.88349 -10.74332 -10.62694 -10.31401 -10.17813 -10.04290 -9.79274 -9.48631 -9.05966 -8.98994 -8.58817 -8.43079 -7.08316 -5.85887 -3.16714 -0.02051 0.57024 1.57389 2.48135 2.86013 3.06197 3.38016 3.43447 3.45271 3.88790 4.01611 4.25932 4.49474 4.50772 4.55614 4.63740 4.78362 4.86240 4.95470 5.02944 5.11420 5.22828 5.29650 5.39734 5.52088 5.54477 5.56522 5.61022 5.70926 5.72489 5.84994 5.87620 6.00763 6.02002 6.07040 6.10633 6.23065 6.27411 6.37496 6.50545 6.52613 6.54156 6.63920 6.85927 7.59579 7.61674 7.64504 8.14998 8.31234 9.42857 9.96639 10.31245 11.36206 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.002799 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.827799 B =10000.809898 C =10378.994557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.095 3.905 17 N -0.599 5.599 18 C 0.571 3.429 19 O -0.535 6.535 20 C -0.097 4.097 21 C -0.081 4.081 22 C -0.107 4.107 23 C -0.075 4.075 24 C 0.121 3.879 25 N -0.478 5.478 26 C 0.133 3.867 27 C -0.177 4.177 28 C -0.048 4.048 29 C -0.068 4.068 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -9.135 -20.386 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.098 0.902 4 C 0.066 3.934 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.028 4.028 17 N -0.332 5.332 18 C 0.359 3.641 19 O -0.414 6.414 20 C -0.101 4.101 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.094 4.094 24 C 0.000 4.000 25 N -0.186 5.186 26 C -0.040 4.040 27 C -0.197 4.197 28 C -0.073 4.073 29 C -0.071 4.071 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.177 0.823 43 H 0.157 0.843 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.280 -9.284 -20.985 22.948 hybrid contribution -0.006 0.589 1.565 1.672 sum -0.286 -8.695 -19.420 21.280 Atomic orbital electron populations 1.22048 0.94697 1.01701 1.02809 1.21961 0.94480 0.97069 0.84141 0.90174 1.21243 0.93520 0.91631 0.87047 0.91597 1.42351 1.81146 1.08923 1.03099 1.19190 1.39564 0.95042 0.83770 0.90972 1.24771 1.02027 0.95605 0.98188 1.69662 1.52511 1.02880 1.32620 0.86180 0.77759 0.77394 0.84755 1.21647 1.21727 1.20676 1.23600 1.01502 1.01897 0.92767 1.22552 0.94600 0.88214 0.97426 1.48498 1.51210 1.28796 1.04671 1.17738 0.79813 0.85164 0.81341 1.90755 1.42718 1.24657 1.83252 1.19918 1.01825 0.93999 0.94349 1.21563 0.97118 0.91992 0.99283 1.20843 0.98205 1.00537 0.93051 1.20952 0.97697 0.92633 0.98096 1.18813 0.97209 0.94097 0.89872 1.68046 1.14258 1.14494 1.21766 1.22991 0.94162 0.88500 0.98346 1.21993 1.00890 1.01837 0.94977 1.21905 0.92875 0.94504 0.98052 1.18588 0.99786 0.94504 0.94230 0.92975 0.90877 0.92129 0.77952 0.93331 0.90382 0.90556 0.91463 0.91077 0.84466 0.84518 0.84385 0.82266 0.84267 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.10 37.16 0.34 -2.13 16 2 C 0.13 2.16 3.18 -66.96 -0.21 1.94 16 3 H 0.08 1.55 7.68 -51.93 -0.40 1.15 16 4 C 0.18 3.25 3.11 -66.11 -0.21 3.04 16 5 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 6 N -0.71 -16.87 5.25 -51.66 -0.27 -17.15 16 7 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 11 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C -0.16 -2.45 6.76 -24.58 -0.17 -2.62 16 16 C 0.10 1.20 5.28 -2.52 -0.01 1.18 16 17 N -0.60 -8.96 3.06 -164.23 -0.50 -9.46 16 18 C 0.57 8.86 6.85 -12.47 -0.09 8.77 16 19 O -0.54 -9.71 13.99 5.29 0.07 -9.64 16 20 C -0.10 -1.28 5.35 -104.65 -0.56 -1.84 16 21 C -0.08 -0.83 8.24 -39.14 -0.32 -1.15 16 22 C -0.11 -0.91 9.92 -40.04 -0.40 -1.31 16 23 C -0.08 -0.74 9.96 -39.38 -0.39 -1.13 16 24 C 0.12 1.50 6.60 -84.87 -0.56 0.94 16 25 N -0.48 -5.75 10.34 -10.99 -0.11 -5.87 16 26 C 0.13 1.31 11.15 -17.47 -0.19 1.11 16 27 C -0.18 -1.80 10.04 -39.73 -0.40 -2.20 16 28 C -0.05 -0.62 9.22 -39.31 -0.36 -0.98 16 29 C -0.07 -0.92 5.76 -106.53 -0.61 -1.53 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.00 7.05 -51.93 -0.37 0.64 16 33 H 0.39 9.89 7.50 -40.82 -0.31 9.58 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 0.69 7.04 -51.93 -0.37 0.33 16 38 H 0.07 0.82 7.39 -51.93 -0.38 0.43 16 39 H 0.14 1.19 6.11 -52.49 -0.32 0.87 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.15 2.17 5.95 -52.49 -0.31 1.86 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -31.78 360.07 -9.87 -41.65 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.79 Total: 9.77 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -4.39 Total: -4.80 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.16 Total: -58.98 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.78 -9.87 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986626784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.096 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds