Wall clock time and date at job start Tue Mar 31 2020 14:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.87370 * 2 1 4 4 C 1.54321 * 110.00852 * 238.89209 * 2 1 3 5 5 H 1.08999 * 110.72237 * 336.68410 * 4 2 1 6 6 N 1.46501 * 110.71545 * 99.96202 * 4 2 1 7 7 C 1.36942 * 119.99552 * 205.00012 * 6 4 2 8 8 H 1.07999 * 120.00385 * 359.97438 * 7 6 4 9 9 C 1.38823 * 119.99634 * 180.02562 * 7 6 4 10 10 N 1.31608 * 119.99699 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99582 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47514 * 59.99641 * 11 9 7 13 13 H 1.48502 * 109.46772 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47011 * 299.99265 * 11 9 7 15 15 C 1.55158 * 102.94040 * 218.32030 * 4 2 1 16 16 C 1.54903 * 101.58298 * 35.50561 * 15 4 2 17 17 N 1.47029 * 109.87703 * 121.01308 * 2 1 3 18 18 C 1.34773 * 125.64748 * 298.47119 * 17 2 1 19 19 O 1.21557 * 120.00300 * 181.78363 * 18 17 2 20 20 C 1.47764 * 120.00079 * 1.78248 * 18 17 2 21 21 C 1.40602 * 120.26752 * 350.99299 * 20 18 17 22 22 N 1.30794 * 121.53618 * 179.70490 * 21 20 18 23 23 C 1.33830 * 121.71889 * 0.55717 * 22 21 20 24 24 C 1.40516 * 120.80849 * 179.70099 * 23 22 21 25 25 C 1.36141 * 119.81091 * 180.02562 * 24 23 22 26 26 C 1.39340 * 121.08797 * 359.97438 * 25 24 23 27 27 C 1.36147 * 120.83377 * 0.02562 * 26 25 24 28 28 C 1.40543 * 119.62189 * 0.02562 * 27 26 25 29 29 C 1.39011 * 120.26834 * 171.26123 * 20 18 17 30 30 H 1.09005 * 109.47318 * 287.58060 * 1 2 3 31 31 H 1.09004 * 109.47055 * 47.57770 * 1 2 3 32 32 H 1.08999 * 109.47499 * 167.57344 * 1 2 3 33 33 H 0.96997 * 120.00177 * 24.99527 * 6 4 2 34 34 H 0.97008 * 119.99650 * 180.02562 * 10 9 7 35 35 H 1.09003 * 111.00191 * 277.43012 * 15 4 2 36 36 H 1.09004 * 111.00456 * 153.58147 * 15 4 2 37 37 H 1.09001 * 110.36867 * 204.15072 * 16 15 4 38 38 H 1.09007 * 110.46184 * 81.87548 * 16 15 4 39 39 H 1.08001 * 119.22929 * 359.97323 * 21 20 18 40 40 H 1.08002 * 120.09851 * 0.05962 * 24 23 22 41 41 H 1.07999 * 119.45658 * 179.97438 * 25 24 23 42 42 H 1.07995 * 119.58543 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.18864 * 180.02562 * 27 26 25 44 44 H 1.08003 * 121.01624 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0580 -0.7492 -1.2415 5 1 1.3103 -1.4474 -1.6176 6 7 2.4581 0.1967 -2.2863 7 6 2.4633 -0.1946 -3.5986 8 1 2.1730 -1.2006 -3.8633 9 6 2.8429 0.7015 -4.5886 10 7 3.1972 1.9272 -4.2658 11 14 2.8495 0.1679 -6.3787 12 1 1.4804 -0.2474 -6.7764 13 1 3.2910 1.3008 -7.2312 14 1 3.7830 -0.9740 -6.5514 15 6 3.2917 -1.5109 -0.6891 16 6 2.8175 -1.8763 0.7396 17 7 2.0299 -0.7124 1.1850 18 6 1.8060 -0.3593 2.4663 19 8 2.2977 -1.0067 3.3700 20 6 0.9627 0.8148 2.7725 21 6 0.5471 1.6769 1.7425 22 7 -0.2041 2.7198 1.9847 23 6 -0.6055 3.0252 3.2243 24 6 -1.4074 4.1541 3.4634 25 6 -1.8038 4.4460 4.7327 26 6 -1.4281 3.6418 5.8068 27 6 -0.6519 2.5397 5.6153 28 6 -0.2233 2.2086 4.3184 29 6 0.5785 1.0791 4.0821 30 1 -0.3634 0.3104 0.9797 31 1 -0.3633 0.6933 -0.7586 32 1 -0.3634 -1.0036 -0.2211 33 1 2.7191 1.1001 -2.0485 34 1 3.4621 2.5535 -4.9577 35 1 4.1681 -0.8636 -0.6563 36 1 3.4920 -2.4077 -1.2755 37 1 3.6740 -2.0285 1.3963 38 1 2.1940 -2.7701 0.7173 39 1 0.8518 1.4706 0.7271 40 1 -1.7088 4.7881 2.6427 41 1 -2.4196 5.3153 4.9101 42 1 -1.7566 3.8958 6.8037 43 1 -0.3672 1.9235 6.4553 44 1 0.8866 0.4358 4.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987079085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:53 Heat of formation + Delta-G solvation = 81.547648 kcal Electronic energy + Delta-G solvation = -27203.751831 eV Core-core repulsion = 23509.057850 eV Total energy + Delta-G solvation = -3694.693981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41767 -39.96538 -37.72134 -37.17638 -34.23551 -33.58081 -32.58286 -31.56959 -30.29767 -29.96993 -29.13584 -25.57020 -24.99050 -24.00662 -23.21485 -22.38796 -22.26197 -20.46996 -19.67851 -18.56009 -17.79649 -17.44775 -16.55099 -16.11085 -15.94526 -15.20740 -15.13649 -14.73497 -14.42774 -14.37216 -14.10131 -13.84617 -13.53490 -13.41649 -13.18402 -12.93366 -12.63171 -12.29341 -12.21716 -11.98133 -11.79068 -11.64391 -11.42323 -11.12385 -11.10416 -10.87037 -10.69198 -10.67789 -10.43444 -10.24344 -10.00035 -9.79408 -9.45188 -9.01867 -8.87799 -8.58348 -8.42653 -7.11976 -5.87611 -3.18907 0.06666 0.48881 1.69098 2.44859 2.95975 3.16371 3.38611 3.43695 3.44550 3.94834 4.10070 4.32811 4.39443 4.50741 4.58083 4.61809 4.73801 4.84372 4.89724 4.96841 5.06091 5.18845 5.27220 5.40146 5.40535 5.53439 5.55911 5.60418 5.66774 5.72664 5.74877 5.85222 5.95730 6.06954 6.08254 6.15295 6.17122 6.19723 6.30420 6.35240 6.42609 6.53645 6.59110 6.81211 7.55703 7.60567 7.77704 8.14219 8.28882 9.40932 9.92481 10.27192 11.34153 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.003183 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.181420 B = 8793.314955 C =10173.374054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 H 0.093 0.907 4 C 0.181 3.819 5 H 0.073 0.927 6 N -0.713 5.713 7 C -0.248 4.248 8 H 0.073 0.927 9 C -0.007 4.007 10 N -0.928 5.928 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.157 4.157 16 C 0.107 3.893 17 N -0.600 5.600 18 C 0.579 3.421 19 O -0.545 6.545 20 C -0.194 4.194 21 C 0.134 3.866 22 N -0.481 5.481 23 C 0.144 3.856 24 C -0.099 4.099 25 C -0.094 4.094 26 C -0.127 4.127 27 C -0.084 4.084 28 C -0.122 4.122 29 C 0.009 3.991 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.386 0.614 34 H 0.258 0.742 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.206 0.794 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.790 0.554 18.325 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.005 4.005 3 H 0.110 0.890 4 C 0.069 3.931 5 H 0.091 0.909 6 N -0.354 5.354 7 C -0.379 4.379 8 H 0.091 0.909 9 C -0.204 4.204 10 N -0.575 5.575 11 Si 0.739 3.261 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.015 4.015 17 N -0.333 5.333 18 C 0.368 3.632 19 O -0.425 6.425 20 C -0.199 4.199 21 C -0.037 4.037 22 N -0.189 5.189 23 C 0.023 3.977 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.145 4.145 27 C -0.103 4.103 28 C -0.124 4.124 29 C -0.018 4.018 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.220 0.780 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.222 0.778 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.875 0.800 18.043 20.123 hybrid contribution 0.395 -0.459 -0.222 0.645 sum -8.480 0.341 17.821 19.739 Atomic orbital electron populations 1.22846 0.94445 1.03822 1.02497 1.22454 0.94422 0.97079 0.86496 0.89013 1.21232 0.93884 0.91493 0.86483 0.90941 1.42331 1.79416 1.11660 1.01959 1.19145 1.39042 0.96938 0.82766 0.90945 1.24763 1.01627 0.95833 0.98141 1.69642 1.50763 1.04533 1.32598 0.86257 0.77784 0.77283 0.84752 1.21132 1.21660 1.21177 1.23618 1.01195 1.01953 0.93052 1.22316 0.95020 0.87638 0.96546 1.48402 1.51542 1.28843 1.04489 1.17573 0.80444 0.83650 0.81513 1.90749 1.51903 1.54936 1.44882 1.20955 1.04239 0.99337 0.95409 1.25275 0.89472 0.87088 1.01910 1.68215 1.12452 1.17377 1.20812 1.19169 0.95420 0.94577 0.88557 1.20874 0.97218 0.95903 0.97727 1.20973 0.98733 0.99365 0.92320 1.20904 0.98831 0.95350 0.99372 1.21040 0.96857 0.97220 0.95208 1.18811 1.01284 0.97063 0.95204 1.21908 0.90187 0.93423 0.96251 0.91706 0.89627 0.91515 0.77959 0.93224 0.90500 0.90188 0.90754 0.91532 0.77826 0.84416 0.85218 0.85450 0.85086 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 7.79 37.16 0.29 -2.18 16 2 C 0.10 1.52 2.48 -66.95 -0.17 1.36 16 3 H 0.09 1.48 5.83 -51.93 -0.30 1.18 16 4 C 0.18 3.17 3.14 -66.10 -0.21 2.97 16 5 H 0.07 1.26 7.62 -51.93 -0.40 0.86 16 6 N -0.71 -16.07 5.22 -51.65 -0.27 -16.34 16 7 C -0.25 -6.33 9.96 -15.05 -0.15 -6.48 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 10 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 11 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 15 C -0.16 -2.49 6.77 -24.58 -0.17 -2.66 16 16 C 0.11 1.54 6.91 -2.53 -0.02 1.52 16 17 N -0.60 -9.15 3.07 -166.31 -0.51 -9.66 16 18 C 0.58 9.31 7.65 -12.37 -0.09 9.21 16 19 O -0.55 -9.93 16.66 5.32 0.09 -9.84 16 20 C -0.19 -2.84 5.31 -104.83 -0.56 -3.39 16 21 C 0.13 1.97 7.35 -17.10 -0.13 1.85 16 22 N -0.48 -7.26 10.30 -10.71 -0.11 -7.37 16 23 C 0.14 1.94 6.61 -84.79 -0.56 1.38 16 24 C -0.10 -1.08 9.97 -39.48 -0.39 -1.47 16 25 C -0.09 -0.79 9.94 -39.93 -0.40 -1.19 16 26 C -0.13 -1.01 9.96 -39.92 -0.40 -1.41 16 27 C -0.08 -0.79 9.77 -39.46 -0.39 -1.17 16 28 C -0.12 -1.49 5.74 -106.81 -0.61 -2.10 16 29 C 0.01 0.11 9.46 -38.43 -0.36 -0.25 16 30 H 0.06 0.89 4.21 -52.01 -0.22 0.67 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 33 H 0.39 9.34 7.56 -40.82 -0.31 9.03 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.07 8.02 -51.93 -0.42 0.66 16 38 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.21 3.02 2.12 -55.40 -0.12 2.90 16 40 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.15 1.72 7.73 -52.48 -0.41 1.31 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -30.75 355.38 -9.65 -40.40 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.50 Total: 11.31 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -4.40 Total: -4.30 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.17 Total: -59.21 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.75 -9.65 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987079085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.947 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds