Wall clock time and date at job start Tue Mar 31 2020 14:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.99558 * 2 1 4 4 C 1.54326 * 109.88193 * 238.90771 * 2 1 3 5 5 H 1.08998 * 110.87087 * 144.34198 * 4 2 1 6 6 N 1.46504 * 110.72112 * 21.13773 * 4 2 1 7 7 C 1.36927 * 120.00048 * 160.02336 * 6 4 2 8 8 H 1.08006 * 120.00206 * 359.97438 * 7 6 4 9 9 C 1.38817 * 120.00079 * 179.97438 * 7 6 4 10 10 N 1.31616 * 120.00059 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00061 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47119 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47254 * 240.00621 * 11 9 7 14 14 H 1.48491 * 109.47171 * 120.00020 * 11 9 7 15 15 C 1.55163 * 102.94162 * 262.77605 * 4 2 1 16 16 C 1.54908 * 101.57763 * 324.49800 * 15 4 2 17 17 N 1.47021 * 109.87987 * 121.10194 * 2 1 3 18 18 C 1.34774 * 125.64719 * 300.43401 * 17 2 1 19 19 O 1.21566 * 120.00120 * 356.30992 * 18 17 2 20 20 C 1.47760 * 119.99980 * 176.30599 * 18 17 2 21 21 C 1.40600 * 120.26945 * 206.24870 * 20 18 17 22 22 N 1.30801 * 121.53595 * 179.67014 * 21 20 18 23 23 C 1.33822 * 121.71946 * 0.63979 * 22 21 20 24 24 C 1.40524 * 120.82378 * 179.67684 * 23 22 21 25 25 C 1.36132 * 119.81758 * 179.97438 * 24 23 22 26 26 C 1.39342 * 121.09092 * 359.97438 * 25 24 23 27 27 C 1.36140 * 120.83099 * 359.97438 * 26 25 24 28 28 C 1.40545 * 119.61846 * 0.03997 * 27 26 25 29 29 C 1.39010 * 120.26569 * 26.53016 * 20 18 17 30 30 H 1.09004 * 109.47226 * 181.08937 * 1 2 3 31 31 H 1.09000 * 109.46850 * 301.08963 * 1 2 3 32 32 H 1.08997 * 109.47002 * 61.09611 * 1 2 3 33 33 H 0.96997 * 119.99588 * 340.02775 * 6 4 2 34 34 H 0.97002 * 119.99528 * 359.97438 * 10 9 7 35 35 H 1.08998 * 111.00518 * 82.57289 * 15 4 2 36 36 H 1.09000 * 110.99855 * 206.42356 * 15 4 2 37 37 H 1.09004 * 110.36375 * 155.85073 * 16 15 4 38 38 H 1.09004 * 110.36687 * 278.16876 * 16 15 4 39 39 H 1.08001 * 119.23103 * 359.97438 * 21 20 18 40 40 H 1.08005 * 120.09315 * 0.02562 * 24 23 22 41 41 H 1.08004 * 119.45637 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.58643 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.18982 * 180.02562 * 27 26 25 44 44 H 1.08001 * 121.02040 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2428 5 1 2.9651 -0.2843 -1.6211 6 7 1.0293 -0.8025 -2.2876 7 6 1.3877 -1.0415 -3.5873 8 1 2.4266 -1.1904 -3.8424 9 6 0.4159 -1.0923 -4.5773 10 7 -0.8501 -0.9102 -4.2666 11 14 0.9050 -1.4175 -6.3505 12 1 2.3782 -1.5847 -6.4350 13 1 0.4882 -0.2710 -7.1973 14 1 0.2377 -2.6547 -6.8291 15 6 2.3519 -2.1695 -0.6925 16 6 2.8568 -1.8498 0.7366 17 7 2.0300 -0.7142 1.1838 18 6 1.7754 -0.3846 2.4656 19 8 1.1335 0.6159 2.7200 20 6 2.2763 -1.2396 3.5618 21 6 1.6121 -1.2652 4.8007 22 7 2.0302 -2.0174 5.7857 23 6 3.1167 -2.7900 5.6688 24 6 3.5531 -3.5858 6.7416 25 6 4.6608 -4.3644 6.6000 26 6 5.3753 -4.3886 5.4040 27 6 4.9835 -3.6326 4.3418 28 6 3.8446 -2.8165 4.4525 29 6 3.4115 -2.0206 3.3782 30 1 -0.3634 -1.0275 0.0195 31 1 -0.3633 0.5307 0.8801 32 1 -0.3633 0.4967 -0.8996 33 1 0.0963 -0.6683 -2.0586 34 1 -1.1040 -0.7410 -3.3458 35 1 1.4452 -2.7737 -0.6605 36 1 3.1270 -2.6618 -1.2798 37 1 2.7088 -2.7081 1.3921 38 1 3.9092 -1.5667 0.7127 39 1 0.7334 -0.6531 4.9408 40 1 3.0107 -3.5804 7.6756 41 1 4.9908 -4.9741 7.4282 42 1 6.2504 -5.0156 5.3183 43 1 5.5447 -3.6595 3.4195 44 1 3.9436 -2.0170 2.4384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987079087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:55 Heat of formation + Delta-G solvation = 55.173740 kcal Electronic energy + Delta-G solvation = -26956.346267 eV Core-core repulsion = 23260.508627 eV Total energy + Delta-G solvation = -3695.837639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33134 -40.02501 -37.88951 -37.01236 -34.79812 -33.84356 -31.90050 -30.99802 -30.85789 -30.32274 -28.63354 -25.53169 -25.05759 -24.36640 -23.43769 -22.75634 -22.37139 -20.45450 -19.16541 -18.59899 -17.59937 -17.54146 -17.10702 -16.26160 -15.82591 -15.65906 -15.02500 -14.92110 -14.69417 -14.43198 -14.17967 -13.95924 -13.70826 -13.54621 -13.35477 -12.96737 -12.67917 -12.34825 -12.14187 -12.09634 -11.87934 -11.83351 -11.80054 -11.40527 -10.95745 -10.83376 -10.64623 -10.42071 -10.26833 -10.17533 -10.08654 -9.60722 -9.27441 -9.13876 -9.00897 -8.65236 -8.59419 -7.15303 -6.19212 -3.21078 -0.09084 0.33984 1.53505 2.32345 2.83573 3.04991 3.46977 3.53316 3.62371 3.78023 3.92620 4.17102 4.24370 4.43517 4.46556 4.57768 4.63059 4.73526 4.84025 4.86406 5.05494 5.12075 5.18595 5.29078 5.35889 5.39793 5.45590 5.55436 5.55672 5.62924 5.71842 5.83536 5.87669 5.92500 6.01256 6.02567 6.10555 6.14472 6.35785 6.40006 6.42987 6.52513 6.59890 6.80334 7.48445 7.59575 7.72544 8.09983 8.66443 9.11011 9.97462 10.11264 11.28612 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.002737 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.572232 B =10228.966212 C =11154.370551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.076 0.924 4 C 0.180 3.820 5 H 0.065 0.935 6 N -0.728 5.728 7 C -0.337 4.337 8 H 0.067 0.933 9 C -0.042 4.042 10 N -0.941 5.941 11 Si 1.086 2.914 12 H -0.294 1.294 13 H -0.292 1.292 14 H -0.293 1.293 15 C -0.153 4.153 16 C 0.086 3.914 17 N -0.600 5.600 18 C 0.575 3.425 19 O -0.532 6.532 20 C -0.178 4.178 21 C 0.184 3.816 22 N -0.478 5.478 23 C 0.139 3.861 24 C -0.098 4.098 25 C -0.094 4.094 26 C -0.121 4.121 27 C -0.087 4.087 28 C -0.112 4.112 29 C -0.031 4.031 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.374 0.626 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.171 0.829 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.158 -6.847 19.953 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.094 0.906 4 C 0.068 3.932 5 H 0.083 0.917 6 N -0.373 5.373 7 C -0.467 4.467 8 H 0.085 0.915 9 C -0.240 4.240 10 N -0.586 5.586 11 Si 0.917 3.083 12 H -0.221 1.221 13 H -0.219 1.219 14 H -0.220 1.220 15 C -0.195 4.195 16 C -0.037 4.037 17 N -0.333 5.333 18 C 0.363 3.637 19 O -0.410 6.410 20 C -0.183 4.183 21 C 0.010 3.990 22 N -0.185 5.185 23 C 0.018 3.982 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.139 4.139 27 C -0.106 4.106 28 C -0.114 4.114 29 C -0.057 4.057 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.212 0.788 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.188 0.812 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.029 -6.560 19.348 23.708 hybrid contribution 0.870 0.076 0.829 1.204 sum 12.898 -6.485 20.177 24.810 Atomic orbital electron populations 1.22015 0.94599 1.02400 1.02764 1.21882 0.95371 0.96014 0.84233 0.90588 1.21117 0.93130 0.92001 0.86977 0.91665 1.42672 1.04486 1.86383 1.03767 1.20090 0.94905 1.46768 0.84974 0.91534 1.25801 0.93574 1.00317 1.04303 1.70829 1.16210 1.51272 1.20264 0.83142 0.73964 0.76568 0.74642 1.22072 1.21942 1.21977 1.23579 1.01867 1.01408 0.92611 1.22779 0.94408 0.88780 0.97695 1.48481 1.49828 1.30214 1.04823 1.17617 0.80201 0.84770 0.81110 1.90789 1.40745 1.26387 1.83113 1.20989 0.99049 1.01282 0.96962 1.23051 0.97353 0.92335 0.86218 1.68065 1.12832 1.06629 1.31011 1.19069 0.91360 0.95005 0.92765 1.20840 0.96952 0.95810 0.98088 1.20988 0.94613 0.97883 0.97877 1.20951 1.00323 0.99506 0.93149 1.21076 0.94840 0.95159 0.99493 1.18827 0.97926 0.99902 0.94732 1.22643 0.94001 0.90494 0.98543 0.92472 0.91812 0.90482 0.78811 0.93297 0.90624 0.90291 0.90689 0.91093 0.81226 0.84530 0.85118 0.85246 0.84851 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 7.96 37.16 0.30 -2.57 16 2 C 0.13 2.18 3.46 -66.95 -0.23 1.95 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.18 3.32 3.46 -66.09 -0.23 3.09 16 5 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 6 N -0.73 -17.10 5.02 -51.64 -0.26 -17.36 16 7 C -0.34 -8.95 9.98 -15.06 -0.15 -9.10 16 8 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 9 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 10 N -0.94 -28.30 13.70 55.49 0.76 -27.53 16 11 Si 1.09 25.16 29.92 -169.99 -5.09 20.08 16 12 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 15 C -0.15 -2.38 6.77 -24.58 -0.17 -2.55 16 16 C 0.09 1.05 5.02 -2.53 -0.01 1.04 16 17 N -0.60 -8.89 3.08 -164.15 -0.51 -9.40 16 18 C 0.58 8.83 7.41 -12.37 -0.09 8.74 16 19 O -0.53 -9.71 15.68 5.31 0.08 -9.63 16 20 C -0.18 -2.30 5.73 -104.83 -0.60 -2.90 16 21 C 0.18 2.37 10.73 -17.10 -0.18 2.18 16 22 N -0.48 -6.17 10.30 -10.67 -0.11 -6.28 16 23 C 0.14 1.61 6.61 -84.79 -0.56 1.05 16 24 C -0.10 -0.89 9.97 -39.48 -0.39 -1.28 16 25 C -0.09 -0.64 9.94 -39.93 -0.40 -1.04 16 26 C -0.12 -0.81 9.96 -39.93 -0.40 -1.20 16 27 C -0.09 -0.68 9.77 -39.47 -0.39 -1.07 16 28 C -0.11 -1.17 5.74 -106.81 -0.61 -1.78 16 29 C -0.03 -0.33 7.80 -38.43 -0.30 -0.63 16 30 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.06 1.14 6.88 -51.93 -0.36 0.78 16 32 H 0.08 1.49 6.67 -51.93 -0.35 1.14 16 33 H 0.37 9.09 3.76 -40.82 -0.15 8.94 16 34 H 0.26 7.57 6.77 -40.82 -0.28 7.30 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.80 6.12 -51.93 -0.32 0.49 16 38 H 0.07 0.70 7.32 -51.93 -0.38 0.32 16 39 H 0.17 2.03 7.85 -52.49 -0.41 1.62 16 40 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.16 1.38 4.58 -52.49 -0.24 1.14 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -32.88 355.45 -9.76 -42.64 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.49 Total: 9.45 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -4.51 Total: -7.33 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.11 Total: -60.56 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.09 Total: 20.08 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.88 -9.76 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987079087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.813 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds