Wall clock time and date at job start Tue Mar 31 2020 14:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.99558 * 2 1 4 4 C 1.54326 * 109.88193 * 238.90771 * 2 1 3 5 5 H 1.08998 * 110.87087 * 144.34198 * 4 2 1 6 6 N 1.46504 * 110.72112 * 21.13773 * 4 2 1 7 7 C 1.36927 * 120.00048 * 160.02336 * 6 4 2 8 8 H 1.08006 * 120.00206 * 359.97438 * 7 6 4 9 9 C 1.38817 * 120.00079 * 179.97438 * 7 6 4 10 10 N 1.31616 * 120.00059 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00061 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47119 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47254 * 240.00621 * 11 9 7 14 14 H 1.48491 * 109.47171 * 120.00020 * 11 9 7 15 15 C 1.55163 * 102.94162 * 262.77605 * 4 2 1 16 16 C 1.54908 * 101.57763 * 324.49800 * 15 4 2 17 17 N 1.47021 * 109.87987 * 121.10194 * 2 1 3 18 18 C 1.34774 * 125.64719 * 300.43401 * 17 2 1 19 19 O 1.21566 * 120.00120 * 356.30992 * 18 17 2 20 20 C 1.47760 * 119.99980 * 176.30599 * 18 17 2 21 21 C 1.40600 * 120.26945 * 206.24870 * 20 18 17 22 22 N 1.30801 * 121.53595 * 179.67014 * 21 20 18 23 23 C 1.33822 * 121.71946 * 0.63979 * 22 21 20 24 24 C 1.40524 * 120.82378 * 179.67684 * 23 22 21 25 25 C 1.36132 * 119.81758 * 179.97438 * 24 23 22 26 26 C 1.39342 * 121.09092 * 359.97438 * 25 24 23 27 27 C 1.36140 * 120.83099 * 359.97438 * 26 25 24 28 28 C 1.40545 * 119.61846 * 0.03997 * 27 26 25 29 29 C 1.39010 * 120.26569 * 26.53016 * 20 18 17 30 30 H 1.09004 * 109.47226 * 181.08937 * 1 2 3 31 31 H 1.09000 * 109.46850 * 301.08963 * 1 2 3 32 32 H 1.08997 * 109.47002 * 61.09611 * 1 2 3 33 33 H 0.96997 * 119.99588 * 340.02775 * 6 4 2 34 34 H 0.97002 * 119.99528 * 359.97438 * 10 9 7 35 35 H 1.08998 * 111.00518 * 82.57289 * 15 4 2 36 36 H 1.09000 * 110.99855 * 206.42356 * 15 4 2 37 37 H 1.09004 * 110.36375 * 155.85073 * 16 15 4 38 38 H 1.09004 * 110.36687 * 278.16876 * 16 15 4 39 39 H 1.08001 * 119.23103 * 359.97438 * 21 20 18 40 40 H 1.08005 * 120.09315 * 0.02562 * 24 23 22 41 41 H 1.08004 * 119.45637 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.58643 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.18982 * 180.02562 * 27 26 25 44 44 H 1.08001 * 121.02040 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2428 5 1 2.9651 -0.2843 -1.6211 6 7 1.0293 -0.8025 -2.2876 7 6 1.3877 -1.0415 -3.5873 8 1 2.4266 -1.1904 -3.8424 9 6 0.4159 -1.0923 -4.5773 10 7 -0.8501 -0.9102 -4.2666 11 14 0.9050 -1.4175 -6.3505 12 1 2.3782 -1.5847 -6.4350 13 1 0.4882 -0.2710 -7.1973 14 1 0.2377 -2.6547 -6.8291 15 6 2.3519 -2.1695 -0.6925 16 6 2.8568 -1.8498 0.7366 17 7 2.0300 -0.7142 1.1838 18 6 1.7754 -0.3846 2.4656 19 8 1.1335 0.6159 2.7200 20 6 2.2763 -1.2396 3.5618 21 6 1.6121 -1.2652 4.8007 22 7 2.0302 -2.0174 5.7857 23 6 3.1167 -2.7900 5.6688 24 6 3.5531 -3.5858 6.7416 25 6 4.6608 -4.3644 6.6000 26 6 5.3753 -4.3886 5.4040 27 6 4.9835 -3.6326 4.3418 28 6 3.8446 -2.8165 4.4525 29 6 3.4115 -2.0206 3.3782 30 1 -0.3634 -1.0275 0.0195 31 1 -0.3633 0.5307 0.8801 32 1 -0.3633 0.4967 -0.8996 33 1 0.0963 -0.6683 -2.0586 34 1 -1.1040 -0.7410 -3.3458 35 1 1.4452 -2.7737 -0.6605 36 1 3.1270 -2.6618 -1.2798 37 1 2.7088 -2.7081 1.3921 38 1 3.9092 -1.5667 0.7127 39 1 0.7334 -0.6531 4.9408 40 1 3.0107 -3.5804 7.6756 41 1 4.9908 -4.9741 7.4282 42 1 6.2504 -5.0156 5.3183 43 1 5.5447 -3.6595 3.4195 44 1 3.9436 -2.0170 2.4384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987079087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:54 Heat of formation + Delta-G solvation = 34.920929 kcal Electronic energy + Delta-G solvation = -26957.224495 eV Core-core repulsion = 23260.508627 eV Total energy + Delta-G solvation = -3696.715867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22966 -41.13074 -39.12472 -37.85430 -36.39747 -34.90690 -33.37165 -32.30432 -31.77219 -31.16644 -30.15831 -26.90256 -26.05718 -25.60009 -24.94298 -23.82460 -23.17506 -21.61726 -20.46087 -19.60077 -19.39526 -18.34989 -18.14793 -17.30608 -17.02369 -16.97761 -16.39510 -15.96327 -15.61191 -15.51263 -15.24829 -15.17707 -14.92253 -14.54047 -14.35956 -14.31948 -14.05485 -13.82398 -13.37486 -13.22343 -12.86078 -12.78058 -12.72298 -12.61789 -12.45829 -12.39703 -11.97267 -11.81746 -11.76691 -11.58064 -11.31172 -11.23346 -10.92290 -10.57841 -9.97958 -9.76762 -9.31832 -9.11894 -8.36598 -5.32038 -0.84384 -0.44146 0.81919 1.42582 1.60940 1.67807 1.72330 1.83159 2.09785 2.73421 3.01398 3.07593 3.28606 3.41085 3.44037 3.59600 3.62588 3.69445 3.77943 3.80354 3.97325 4.03955 4.19414 4.22757 4.24107 4.31122 4.39424 4.45059 4.48163 4.58061 4.64779 4.68511 4.71481 4.91923 4.94334 5.04934 5.07030 5.12652 5.17303 5.33936 5.37530 5.40493 5.46502 5.64265 5.84386 6.32825 6.50821 6.73436 6.90686 7.09231 7.99457 8.11139 9.14877 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.002737 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.572232 B =10228.966212 C =11154.370551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.071 0.929 4 C 0.172 3.828 5 H 0.070 0.930 6 N -0.745 5.745 7 C -0.324 4.324 8 H 0.075 0.925 9 C -0.107 4.107 10 N -0.979 5.979 11 Si 1.132 2.868 12 H -0.266 1.266 13 H -0.296 1.296 14 H -0.294 1.294 15 C -0.144 4.144 16 C 0.092 3.908 17 N -0.600 5.600 18 C 0.577 3.423 19 O -0.572 6.572 20 C -0.199 4.199 21 C 0.170 3.830 22 N -0.498 5.498 23 C 0.115 3.885 24 C -0.123 4.123 25 C -0.077 4.077 26 C -0.116 4.116 27 C -0.088 4.088 28 C -0.126 4.126 29 C -0.013 4.013 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.366 0.634 34 H 0.243 0.757 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.163 0.837 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.325 -9.292 20.739 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.089 0.911 4 C 0.062 3.938 5 H 0.088 0.912 6 N -0.389 5.389 7 C -0.455 4.455 8 H 0.093 0.907 9 C -0.298 4.298 10 N -0.628 5.628 11 Si 0.957 3.043 12 H -0.191 1.191 13 H -0.224 1.224 14 H -0.222 1.222 15 C -0.184 4.184 16 C -0.029 4.029 17 N -0.332 5.332 18 C 0.366 3.634 19 O -0.452 6.452 20 C -0.204 4.204 21 C -0.004 4.004 22 N -0.205 5.205 23 C -0.006 4.006 24 C -0.142 4.142 25 C -0.096 4.096 26 C -0.133 4.133 27 C -0.107 4.107 28 C -0.128 4.128 29 C -0.039 4.039 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.202 0.798 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.182 0.818 43 H 0.181 0.819 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 16.264 -9.030 20.183 27.449 hybrid contribution -0.271 0.736 0.778 1.105 sum 15.994 -8.294 20.962 27.640 Atomic orbital electron populations 1.21856 0.95785 1.01430 1.01511 1.21622 0.94324 0.96030 0.84951 0.91071 1.21331 0.91942 0.94250 0.86300 0.91159 1.42871 1.05229 1.86683 1.04126 1.20443 0.95030 1.43867 0.86149 0.90724 1.27156 0.93289 1.01120 1.08218 1.70944 1.17688 1.54621 1.19525 0.82555 0.75261 0.75967 0.70489 1.19051 1.22367 1.22163 1.23379 1.01582 0.98645 0.94844 1.22989 0.95664 0.88674 0.95594 1.48454 1.50083 1.30641 1.04051 1.17984 0.79415 0.84467 0.81490 1.90760 1.42589 1.28206 1.83689 1.20695 1.00837 1.02849 0.96019 1.22977 0.97726 0.92975 0.86719 1.68038 1.14032 1.07309 1.31143 1.19530 0.91337 0.95374 0.94324 1.21039 0.98431 0.96795 0.97897 1.21443 0.92905 0.96223 0.99040 1.21434 1.00815 0.98805 0.92279 1.21455 0.93791 0.94217 1.01225 1.19058 0.98988 1.00630 0.94086 1.22868 0.92616 0.88923 0.99469 0.93296 0.92161 0.92415 0.79762 0.94690 0.92808 0.88725 0.88430 0.87250 0.81962 0.84219 0.81936 0.81760 0.81892 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 7.96 71.98 0.57 -5.01 16 2 C 0.13 4.62 3.46 45.34 0.16 4.78 16 3 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.17 6.22 3.46 46.18 0.16 6.38 16 5 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 6 N -0.74 -35.43 5.02 -317.31 -1.59 -37.02 16 7 C -0.32 -17.14 9.98 84.04 0.84 -16.30 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 9 C -0.11 -6.02 5.50 84.86 0.47 -5.56 16 10 N -0.98 -60.64 13.70 21.65 0.30 -60.34 16 11 Si 1.13 50.58 29.92 68.60 2.05 52.64 16 12 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 13 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 15 C -0.14 -4.16 6.77 31.99 0.22 -3.95 16 16 C 0.09 1.95 5.02 86.86 0.44 2.39 16 17 N -0.60 -17.19 3.08 -791.52 -2.44 -19.63 16 18 C 0.58 17.78 7.41 86.76 0.64 18.42 16 19 O -0.57 -21.72 15.68 -3.92 -0.06 -21.78 16 20 C -0.20 -5.06 5.73 -20.00 -0.11 -5.18 16 21 C 0.17 4.55 10.73 85.42 0.92 5.47 16 22 N -0.50 -13.09 10.30 -187.68 -1.93 -15.02 16 23 C 0.11 2.53 6.61 40.27 0.27 2.80 16 24 C -0.12 -1.99 9.97 22.34 0.22 -1.77 16 25 C -0.08 -0.74 9.94 22.05 0.22 -0.52 16 26 C -0.12 -0.93 9.96 22.05 0.22 -0.71 16 27 C -0.09 -0.97 9.77 22.34 0.22 -0.75 16 28 C -0.13 -2.28 5.74 -21.28 -0.12 -2.40 16 29 C -0.01 -0.25 7.80 23.02 0.18 -0.07 16 30 H 0.05 1.88 8.08 -2.38 -0.02 1.87 16 31 H 0.06 2.29 6.88 -2.39 -0.02 2.27 16 32 H 0.06 2.38 6.67 -2.39 -0.02 2.37 16 33 H 0.37 18.55 3.76 -92.71 -0.35 18.20 16 34 H 0.24 15.06 6.77 -92.71 -0.63 14.43 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.10 1.71 6.12 -2.39 -0.01 1.70 16 38 H 0.11 1.58 7.32 -2.38 -0.02 1.56 16 39 H 0.16 4.31 7.85 -2.91 -0.02 4.28 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.16 0.25 8.06 -2.91 -0.02 0.22 16 43 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 44 H 0.18 2.35 4.58 -2.91 -0.01 2.34 16 Total: -1.00 -75.16 355.45 2.65 -72.51 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.83 Total: 30.64 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.50 Total: -1.99 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -5.67 Total: -132.01 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.64 kcal Total: -75.16 2.65 -72.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987079087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.427 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds