Wall clock time and date at job start Tue Mar 31 2020 14:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.00013 * 2 1 4 4 C 1.54326 * 109.88000 * 121.09980 * 2 1 3 5 5 H 1.09000 * 110.71509 * 215.58386 * 4 2 1 6 6 N 1.46491 * 110.72356 * 338.85633 * 4 2 1 7 7 C 1.36931 * 120.00367 * 199.98031 * 6 4 2 8 8 H 1.08000 * 119.99995 * 0.02562 * 7 6 4 9 9 C 1.38816 * 120.00136 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00150 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00085 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46958 * 90.00226 * 11 9 7 13 13 H 1.48499 * 109.47269 * 210.00008 * 11 9 7 14 14 H 1.48503 * 109.47179 * 330.00612 * 11 9 7 15 15 C 1.55158 * 102.94245 * 97.22420 * 4 2 1 16 16 C 1.54907 * 101.58608 * 35.49977 * 15 4 2 17 17 N 1.47028 * 109.87966 * 238.90152 * 2 1 3 18 18 C 1.34776 * 125.64574 * 59.56672 * 17 2 1 19 19 O 1.21567 * 119.99970 * 354.08119 * 18 17 2 20 20 C 1.47764 * 120.00059 * 174.08683 * 18 17 2 21 21 C 1.40598 * 120.26922 * 155.84815 * 20 18 17 22 22 N 1.30790 * 121.53788 * 179.97438 * 21 20 18 23 23 C 1.33828 * 121.71938 * 0.02562 * 22 21 20 24 24 C 1.40530 * 120.81628 * 179.97438 * 23 22 21 25 25 C 1.36130 * 119.81329 * 180.02562 * 24 23 22 26 26 C 1.39345 * 121.08695 * 359.95691 * 25 24 23 27 27 C 1.36142 * 120.83644 * 0.04136 * 26 25 24 28 28 C 1.40542 * 119.61556 * 359.97438 * 27 26 25 29 29 C 1.39013 * 120.26374 * 335.56702 * 20 18 17 30 30 H 1.08998 * 109.46769 * 298.89998 * 1 2 3 31 31 H 1.09001 * 109.46709 * 58.90164 * 1 2 3 32 32 H 1.09000 * 109.47092 * 178.90240 * 1 2 3 33 33 H 0.97007 * 119.99780 * 19.98161 * 6 4 2 34 34 H 0.96998 * 120.00524 * 179.97438 * 10 9 7 35 35 H 1.08996 * 111.00276 * 277.42195 * 15 4 2 36 36 H 1.09002 * 111.00240 * 153.57234 * 15 4 2 37 37 H 1.09000 * 110.36499 * 81.82703 * 16 15 4 38 38 H 1.08992 * 110.37215 * 204.15217 * 16 15 4 39 39 H 1.08001 * 119.22734 * 359.97412 * 21 20 18 40 40 H 1.07998 * 120.09060 * 359.97438 * 24 23 22 41 41 H 1.07992 * 119.45549 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.58106 * 180.02562 * 26 25 24 43 43 H 1.07990 * 120.19419 * 180.02562 * 27 26 25 44 44 H 1.07996 * 121.01631 * 0.02871 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9657 -0.2833 1.6182 6 7 1.0294 -0.8027 2.2875 7 6 1.3878 -1.0418 3.5872 8 1 2.4267 -1.1908 3.8422 9 6 0.4160 -1.0926 4.5772 10 7 0.7605 -1.3229 5.8264 11 14 -1.3807 -0.8341 4.1363 12 1 -2.0024 -2.1417 3.8060 13 1 -2.0909 -0.2257 5.2899 14 1 -1.4772 0.0704 2.9625 15 6 2.3518 -2.1696 0.6923 16 6 2.8568 -1.8499 -0.7369 17 7 2.0300 -0.7142 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 0.9924 0.5103 -2.7192 20 6 2.4478 -1.1107 -3.5629 21 6 1.8651 -1.1604 -4.8415 22 7 2.4387 -1.7955 -5.8306 23 6 3.6071 -2.4297 -5.6761 24 6 4.2064 -3.1068 -6.7519 25 6 5.3950 -3.7455 -6.5718 26 6 6.0341 -3.7405 -5.3336 27 6 5.4852 -3.0958 -4.2676 28 6 4.2588 -2.4260 -4.4171 29 6 3.6645 -1.7454 -3.3408 30 1 -0.3633 0.4967 0.8997 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0275 -0.0197 33 1 0.0963 -0.6685 2.0585 34 1 0.0815 -1.3580 6.5182 35 1 1.4452 -2.7737 0.6603 36 1 3.1270 -2.6620 1.2795 37 1 3.9091 -1.5669 -0.7129 38 1 2.7088 -2.7081 -1.3924 39 1 0.9218 -0.6625 -5.0109 40 1 3.7249 -3.1210 -7.7185 41 1 5.8502 -4.2644 -7.4024 42 1 6.9767 -4.2549 -5.2181 43 1 5.9897 -3.0982 -3.3127 44 1 4.1363 -1.7197 -2.3697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987079091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:00 Heat of formation + Delta-G solvation = 57.438626 kcal Electronic energy + Delta-G solvation = -26973.009802 eV Core-core repulsion = 23277.270376 eV Total energy + Delta-G solvation = -3695.739427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33613 -40.05797 -37.92239 -37.02644 -34.71991 -33.76393 -31.91248 -31.06231 -30.88251 -30.45539 -29.19488 -25.77178 -25.07811 -24.43688 -23.19732 -22.76406 -22.32076 -20.37055 -19.17589 -18.57966 -17.97786 -17.55392 -17.08707 -16.21237 -15.98884 -15.64326 -14.98509 -14.84303 -14.46604 -14.44781 -14.30985 -13.98921 -13.75668 -13.54810 -13.33403 -12.97574 -12.76966 -12.32185 -12.14514 -12.08009 -11.96602 -11.82250 -11.75608 -11.47655 -11.28235 -10.95976 -10.82101 -10.62709 -10.41126 -10.21294 -10.10346 -9.69032 -9.55702 -9.15165 -9.03688 -8.67530 -8.60792 -7.39356 -5.86609 -3.23865 -0.10486 0.32597 1.52342 2.30511 2.82800 3.02252 3.31258 3.34297 3.40526 3.77155 3.91421 4.16112 4.23290 4.42525 4.45663 4.50607 4.59421 4.72911 4.82038 4.85494 5.01475 5.07707 5.15410 5.21609 5.34509 5.39255 5.44835 5.47516 5.54221 5.58240 5.70943 5.76488 5.80917 5.91732 5.95416 6.01985 6.07582 6.13318 6.30843 6.40766 6.41094 6.48998 6.53130 6.76338 7.45938 7.58004 7.87796 8.07429 8.32032 9.09160 9.81463 9.99846 11.31136 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.002837 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.565575 B = 9865.729023 C =10696.540974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 H 0.078 0.922 4 C 0.180 3.820 5 H 0.073 0.927 6 N -0.741 5.741 7 C -0.250 4.250 8 H 0.092 0.908 9 C 0.010 3.990 10 N -0.930 5.930 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C -0.153 4.153 16 C 0.090 3.910 17 N -0.602 5.602 18 C 0.576 3.424 19 O -0.532 6.532 20 C -0.179 4.179 21 C 0.184 3.816 22 N -0.479 5.479 23 C 0.139 3.861 24 C -0.099 4.099 25 C -0.093 4.093 26 C -0.122 4.122 27 C -0.086 4.086 28 C -0.112 4.112 29 C -0.026 4.026 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.368 0.632 34 H 0.261 0.739 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.170 0.830 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 -4.769 -23.566 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 H 0.096 0.904 4 C 0.068 3.932 5 H 0.091 0.909 6 N -0.385 5.385 7 C -0.379 4.379 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.194 4.194 16 C -0.033 4.033 17 N -0.336 5.336 18 C 0.364 3.636 19 O -0.410 6.410 20 C -0.184 4.184 21 C 0.010 3.990 22 N -0.186 5.186 23 C 0.019 3.981 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.139 4.139 27 C -0.105 4.105 28 C -0.114 4.114 29 C -0.052 4.052 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.205 0.795 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.188 0.812 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.795 -4.375 -24.392 26.647 hybrid contribution -0.857 0.052 0.707 1.112 sum 8.938 -4.323 -23.685 25.682 Atomic orbital electron populations 1.22116 0.94871 1.02457 1.02949 1.21899 0.95297 0.96060 0.84343 0.90368 1.21149 0.93089 0.92238 0.86698 0.90898 1.42975 1.04302 1.86827 1.04438 1.19037 0.95351 1.41626 0.81928 0.89029 1.24653 0.97415 1.01453 0.95164 1.69687 1.32783 1.55523 0.99665 0.86666 0.86807 0.78149 0.77521 1.20940 1.21521 1.20124 1.23559 1.02149 1.01082 0.92625 1.22715 0.94385 0.88555 0.97656 1.48472 1.50062 1.30264 1.04770 1.17624 0.81654 0.83222 0.81104 1.90780 1.35371 1.31664 1.83149 1.20985 0.97684 1.03238 0.96540 1.23054 0.98417 0.91273 0.86245 1.68063 1.09182 1.08857 1.32504 1.19070 0.91147 0.95503 0.92430 1.20839 0.95543 0.97151 0.98228 1.20991 0.94750 0.97875 0.97684 1.20958 1.00476 0.99656 0.92860 1.21085 0.93664 0.96051 0.99698 1.18826 0.97134 1.01102 0.94365 1.22589 0.93198 0.90303 0.99159 0.90788 0.91238 0.92490 0.79507 0.92902 0.90531 0.89848 0.91108 0.90833 0.81250 0.84548 0.85124 0.85229 0.84795 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 7.94 37.16 0.29 -2.52 16 2 C 0.13 2.03 3.52 -66.95 -0.24 1.80 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.18 3.12 3.46 -66.10 -0.23 2.89 16 5 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 6 N -0.74 -16.31 4.82 -51.66 -0.25 -16.56 16 7 C -0.25 -6.62 10.46 -15.06 -0.16 -6.78 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 9 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 10 N -0.93 -28.22 13.97 55.49 0.78 -27.44 16 11 Si 0.88 21.44 27.73 -169.99 -4.71 16.72 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.30 6.45 56.52 0.36 -5.94 16 15 C -0.15 -2.23 6.77 -24.58 -0.17 -2.40 16 16 C 0.09 1.02 5.00 -2.53 -0.01 1.01 16 17 N -0.60 -8.38 3.08 -164.14 -0.51 -8.89 16 18 C 0.58 8.39 7.47 -12.37 -0.09 8.29 16 19 O -0.53 -9.25 15.31 5.31 0.08 -9.17 16 20 C -0.18 -2.20 5.68 -104.83 -0.60 -2.79 16 21 C 0.18 2.26 10.73 -17.11 -0.18 2.07 16 22 N -0.48 -5.96 10.30 -10.67 -0.11 -6.07 16 23 C 0.14 1.56 6.61 -84.79 -0.56 1.00 16 24 C -0.10 -0.87 9.97 -39.48 -0.39 -1.26 16 25 C -0.09 -0.62 9.94 -39.93 -0.40 -1.01 16 26 C -0.12 -0.78 9.96 -39.92 -0.40 -1.17 16 27 C -0.09 -0.65 9.77 -39.47 -0.39 -1.03 16 28 C -0.11 -1.12 5.74 -106.82 -0.61 -1.74 16 29 C -0.03 -0.27 7.94 -38.43 -0.31 -0.57 16 30 H 0.07 1.34 6.60 -51.93 -0.34 0.99 16 31 H 0.07 1.19 6.60 -51.93 -0.34 0.84 16 32 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.37 8.10 2.79 -40.82 -0.11 7.99 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.64 6.84 -51.93 -0.36 0.29 16 38 H 0.07 0.74 6.84 -51.93 -0.36 0.39 16 39 H 0.17 1.93 7.82 -52.49 -0.41 1.52 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.16 1.28 4.67 -52.49 -0.25 1.04 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -32.58 353.73 -9.48 -42.06 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.56 Total: 8.06 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -4.53 Total: -4.05 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.09 Total: -58.96 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.58 -9.48 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987079091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.502 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds