Wall clock time and date at job start Tue Mar 31 2020 14:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.00013 * 2 1 4 4 C 1.54326 * 109.88000 * 121.09980 * 2 1 3 5 5 H 1.09000 * 110.71509 * 215.58386 * 4 2 1 6 6 N 1.46491 * 110.72356 * 338.85633 * 4 2 1 7 7 C 1.36931 * 120.00367 * 199.98031 * 6 4 2 8 8 H 1.08000 * 119.99995 * 0.02562 * 7 6 4 9 9 C 1.38816 * 120.00136 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00150 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00085 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46958 * 90.00226 * 11 9 7 13 13 H 1.48499 * 109.47269 * 210.00008 * 11 9 7 14 14 H 1.48503 * 109.47179 * 330.00612 * 11 9 7 15 15 C 1.55158 * 102.94245 * 97.22420 * 4 2 1 16 16 C 1.54907 * 101.58608 * 35.49977 * 15 4 2 17 17 N 1.47028 * 109.87966 * 238.90152 * 2 1 3 18 18 C 1.34776 * 125.64574 * 59.56672 * 17 2 1 19 19 O 1.21567 * 119.99970 * 354.08119 * 18 17 2 20 20 C 1.47764 * 120.00059 * 174.08683 * 18 17 2 21 21 C 1.40598 * 120.26922 * 155.84815 * 20 18 17 22 22 N 1.30790 * 121.53788 * 179.97438 * 21 20 18 23 23 C 1.33828 * 121.71938 * 0.02562 * 22 21 20 24 24 C 1.40530 * 120.81628 * 179.97438 * 23 22 21 25 25 C 1.36130 * 119.81329 * 180.02562 * 24 23 22 26 26 C 1.39345 * 121.08695 * 359.95691 * 25 24 23 27 27 C 1.36142 * 120.83644 * 0.04136 * 26 25 24 28 28 C 1.40542 * 119.61556 * 359.97438 * 27 26 25 29 29 C 1.39013 * 120.26374 * 335.56702 * 20 18 17 30 30 H 1.08998 * 109.46769 * 298.89998 * 1 2 3 31 31 H 1.09001 * 109.46709 * 58.90164 * 1 2 3 32 32 H 1.09000 * 109.47092 * 178.90240 * 1 2 3 33 33 H 0.97007 * 119.99780 * 19.98161 * 6 4 2 34 34 H 0.96998 * 120.00524 * 179.97438 * 10 9 7 35 35 H 1.08996 * 111.00276 * 277.42195 * 15 4 2 36 36 H 1.09002 * 111.00240 * 153.57234 * 15 4 2 37 37 H 1.09000 * 110.36499 * 81.82703 * 16 15 4 38 38 H 1.08992 * 110.37215 * 204.15217 * 16 15 4 39 39 H 1.08001 * 119.22734 * 359.97412 * 21 20 18 40 40 H 1.07998 * 120.09060 * 359.97438 * 24 23 22 41 41 H 1.07992 * 119.45549 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.58106 * 180.02562 * 26 25 24 43 43 H 1.07990 * 120.19419 * 180.02562 * 27 26 25 44 44 H 1.07996 * 121.01631 * 0.02871 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9657 -0.2833 1.6182 6 7 1.0294 -0.8027 2.2875 7 6 1.3878 -1.0418 3.5872 8 1 2.4267 -1.1908 3.8422 9 6 0.4160 -1.0926 4.5772 10 7 0.7605 -1.3229 5.8264 11 14 -1.3807 -0.8341 4.1363 12 1 -2.0024 -2.1417 3.8060 13 1 -2.0909 -0.2257 5.2899 14 1 -1.4772 0.0704 2.9625 15 6 2.3518 -2.1696 0.6923 16 6 2.8568 -1.8499 -0.7369 17 7 2.0300 -0.7142 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 0.9924 0.5103 -2.7192 20 6 2.4478 -1.1107 -3.5629 21 6 1.8651 -1.1604 -4.8415 22 7 2.4387 -1.7955 -5.8306 23 6 3.6071 -2.4297 -5.6761 24 6 4.2064 -3.1068 -6.7519 25 6 5.3950 -3.7455 -6.5718 26 6 6.0341 -3.7405 -5.3336 27 6 5.4852 -3.0958 -4.2676 28 6 4.2588 -2.4260 -4.4171 29 6 3.6645 -1.7454 -3.3408 30 1 -0.3633 0.4967 0.8997 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0275 -0.0197 33 1 0.0963 -0.6685 2.0585 34 1 0.0815 -1.3580 6.5182 35 1 1.4452 -2.7737 0.6603 36 1 3.1270 -2.6620 1.2795 37 1 3.9091 -1.5669 -0.7129 38 1 2.7088 -2.7081 -1.3924 39 1 0.9218 -0.6625 -5.0109 40 1 3.7249 -3.1210 -7.7185 41 1 5.8502 -4.2644 -7.4024 42 1 6.9767 -4.2549 -5.2181 43 1 5.9897 -3.0982 -3.3127 44 1 4.1363 -1.7197 -2.3697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987079091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:59 Heat of formation + Delta-G solvation = 37.139359 kcal Electronic energy + Delta-G solvation = -26973.890045 eV Core-core repulsion = 23277.270376 eV Total energy + Delta-G solvation = -3696.619669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17933 -41.09793 -39.08411 -37.82191 -36.20427 -34.80555 -33.55153 -32.26191 -31.87034 -31.28701 -30.48150 -27.10607 -25.99045 -25.44119 -24.70629 -23.77138 -23.11773 -21.47192 -20.48389 -19.88744 -19.37247 -18.32100 -18.04286 -17.24987 -17.15300 -16.59382 -16.42613 -15.93214 -15.57535 -15.52178 -15.21096 -15.14270 -14.81434 -14.67743 -14.43393 -14.25793 -14.01173 -13.63986 -13.37072 -13.20722 -13.09051 -12.85528 -12.75408 -12.68616 -12.63655 -12.41398 -12.26104 -11.91266 -11.72222 -11.67490 -11.51441 -11.19895 -10.96873 -10.54495 -9.93133 -9.72434 -9.33315 -9.27633 -8.01997 -5.35122 -0.81648 -0.41213 0.84466 1.37304 1.37763 1.44750 1.47103 1.73374 2.13670 2.47101 3.04282 3.11577 3.27387 3.34619 3.47398 3.54564 3.64038 3.73125 3.78565 3.83259 4.00920 4.09921 4.22692 4.27706 4.30516 4.33490 4.43617 4.47845 4.54621 4.65308 4.68637 4.72889 4.78614 4.96806 4.99868 5.07300 5.13437 5.20154 5.24578 5.36078 5.41803 5.45192 5.48801 5.78984 5.86354 6.22064 6.38078 6.76835 6.96067 7.07462 7.82868 8.00177 9.18943 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.002837 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.565575 B = 9865.729023 C =10696.540974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 H 0.078 0.922 4 C 0.170 3.830 5 H 0.076 0.924 6 N -0.747 5.747 7 C -0.223 4.223 8 H 0.069 0.931 9 C -0.058 4.058 10 N -0.980 5.980 11 Si 0.936 3.064 12 H -0.280 1.280 13 H -0.297 1.297 14 H -0.255 1.255 15 C -0.146 4.146 16 C 0.096 3.904 17 N -0.601 5.601 18 C 0.578 3.422 19 O -0.569 6.569 20 C -0.198 4.198 21 C 0.171 3.829 22 N -0.499 5.499 23 C 0.116 3.884 24 C -0.123 4.123 25 C -0.077 4.077 26 C -0.117 4.117 27 C -0.088 4.088 28 C -0.126 4.126 29 C -0.009 4.009 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.369 0.631 34 H 0.257 0.743 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.164 0.836 40 H 0.140 0.860 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.891 -6.275 -25.734 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.096 0.904 4 C 0.061 3.939 5 H 0.094 0.906 6 N -0.392 5.392 7 C -0.354 4.354 8 H 0.087 0.913 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.765 3.235 12 H -0.207 1.207 13 H -0.224 1.224 14 H -0.180 1.180 15 C -0.187 4.187 16 C -0.026 4.026 17 N -0.334 5.334 18 C 0.368 3.632 19 O -0.450 6.450 20 C -0.204 4.204 21 C -0.003 4.003 22 N -0.207 5.207 23 C -0.005 4.005 24 C -0.142 4.142 25 C -0.097 4.097 26 C -0.135 4.135 27 C -0.107 4.107 28 C -0.128 4.128 29 C -0.035 4.035 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.205 0.795 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.181 0.819 40 H 0.158 0.842 41 H 0.179 0.821 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 12.267 -5.894 -26.632 29.908 hybrid contribution -1.387 0.428 1.225 1.899 sum 10.880 -5.465 -25.407 28.174 Atomic orbital electron populations 1.22027 0.95753 1.01952 1.02055 1.21669 0.94545 0.96157 0.84682 0.90422 1.21370 0.91965 0.94443 0.86132 0.90639 1.42998 1.05434 1.86933 1.03860 1.19036 0.94151 1.38509 0.83662 0.91288 1.25337 1.01525 1.02936 0.95165 1.69841 1.33852 1.58496 1.00831 0.85706 0.81909 0.78378 0.77530 1.20665 1.22409 1.17959 1.23387 1.02007 0.98562 0.94697 1.22891 0.95612 0.88484 0.95598 1.48441 1.50261 1.30631 1.04057 1.17940 0.81082 0.82738 0.81449 1.90754 1.37154 1.33387 1.83677 1.20706 0.98989 1.05123 0.95544 1.23002 0.98663 0.91938 0.86695 1.68037 1.10319 1.09596 1.32721 1.19510 0.91063 0.95942 0.93958 1.21035 0.96832 0.98297 0.98034 1.21428 0.93383 0.95913 0.98947 1.21424 1.01329 0.98601 0.92128 1.21452 0.92545 0.95198 1.01459 1.19049 0.98281 1.01735 0.93739 1.22804 0.91925 0.88635 1.00116 0.92040 0.91612 0.92787 0.79454 0.93422 0.92003 0.88960 0.87513 0.88743 0.81851 0.84249 0.82052 0.81912 0.81982 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 7.94 71.98 0.57 -4.78 16 2 C 0.13 4.11 3.52 45.34 0.16 4.27 16 3 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.17 5.68 3.46 46.18 0.16 5.84 16 5 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 6 N -0.75 -32.41 4.82 -317.34 -1.53 -33.94 16 7 C -0.22 -11.86 10.46 84.04 0.88 -10.98 16 8 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 10 N -0.98 -60.93 13.97 21.65 0.30 -60.63 16 11 Si 0.94 44.67 27.73 68.60 1.90 46.57 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 14 H -0.25 -11.11 6.45 99.48 0.64 -10.47 16 15 C -0.15 -3.92 6.77 31.99 0.22 -3.71 16 16 C 0.10 1.85 5.00 86.85 0.43 2.29 16 17 N -0.60 -15.66 3.08 -791.50 -2.44 -18.10 16 18 C 0.58 16.41 7.47 86.76 0.65 17.06 16 19 O -0.57 -20.07 15.31 -3.93 -0.06 -20.13 16 20 C -0.20 -4.68 5.68 -20.00 -0.11 -4.79 16 21 C 0.17 4.28 10.73 85.42 0.92 5.20 16 22 N -0.50 -12.48 10.30 -187.68 -1.93 -14.42 16 23 C 0.12 2.44 6.61 40.27 0.27 2.70 16 24 C -0.12 -1.92 9.97 22.34 0.22 -1.70 16 25 C -0.08 -0.72 9.94 22.05 0.22 -0.50 16 26 C -0.12 -0.92 9.96 22.05 0.22 -0.70 16 27 C -0.09 -0.92 9.77 22.34 0.22 -0.71 16 28 C -0.13 -2.18 5.74 -21.29 -0.12 -2.30 16 29 C -0.01 -0.16 7.94 23.02 0.18 0.02 16 30 H 0.06 2.19 6.60 -2.39 -0.02 2.18 16 31 H 0.06 2.25 6.60 -2.39 -0.02 2.24 16 32 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 33 H 0.37 15.91 2.79 -92.70 -0.26 15.66 16 34 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.11 1.38 6.84 -2.39 -0.02 1.37 16 38 H 0.09 1.53 6.84 -2.39 -0.02 1.51 16 39 H 0.16 4.03 7.82 -2.91 -0.02 4.00 16 40 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 42 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 43 H 0.16 0.75 8.06 -2.92 -0.02 0.73 16 44 H 0.18 2.13 4.67 -2.91 -0.01 2.12 16 Total: -1.00 -73.69 353.73 2.50 -71.19 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.71 Total: 25.06 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.54 Total: 4.40 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -5.60 Total: -127.09 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.13 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Total: -73.69 2.50 -71.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987079091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.333 kcal (2) G-P(sol) polarization free energy of solvation -73.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds