Wall clock time and date at job start Tue Mar 31 2020 14:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87444 * 2 1 4 4 C 1.54320 * 110.01122 * 121.10150 * 2 1 3 5 5 H 1.08996 * 110.72004 * 260.04651 * 4 2 1 6 6 N 1.46501 * 110.72175 * 23.32005 * 4 2 1 7 7 C 1.36938 * 120.00016 * 205.00390 * 6 4 2 8 8 H 1.07997 * 119.99740 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99673 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00660 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99887 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47166 * 89.99849 * 11 9 7 13 13 H 1.48500 * 109.47453 * 210.00081 * 11 9 7 14 14 H 1.48501 * 109.47100 * 330.00315 * 11 9 7 15 15 C 1.55158 * 102.94142 * 141.67858 * 4 2 1 16 16 C 1.55122 * 101.49072 * 324.33515 * 15 4 2 17 17 N 1.47023 * 109.88100 * 238.98533 * 2 1 3 18 18 C 1.34781 * 125.64836 * 61.45254 * 17 2 1 19 19 O 1.21561 * 120.00170 * 5.72080 * 18 17 2 20 20 C 1.47777 * 119.99780 * 185.71995 * 18 17 2 21 21 C 1.40650 * 119.70293 * 24.75136 * 20 18 17 22 22 C 1.35853 * 120.87953 * 179.97438 * 21 20 18 23 23 C 1.40395 * 119.84409 * 0.04331 * 22 21 20 24 24 C 1.40633 * 121.98659 * 180.02562 * 23 22 21 25 25 C 1.36219 * 118.73176 * 179.97438 * 24 23 22 26 26 N 1.32590 * 121.90526 * 359.97438 * 25 24 23 27 27 C 1.31233 * 122.73865 * 0.02562 * 26 25 24 28 28 C 1.40546 * 119.88629 * 359.97438 * 27 26 25 29 29 C 1.38568 * 119.69816 * 204.77187 * 20 18 17 30 30 H 1.09006 * 109.47456 * 179.55682 * 1 2 3 31 31 H 1.08999 * 109.47494 * 299.56024 * 1 2 3 32 32 H 1.09003 * 109.47192 * 59.56329 * 1 2 3 33 33 H 0.97005 * 119.99679 * 24.99296 * 6 4 2 34 34 H 0.96992 * 120.00152 * 179.97438 * 10 9 7 35 35 H 1.09001 * 111.00171 * 82.57531 * 15 4 2 36 36 H 1.09003 * 111.00399 * 206.38018 * 15 4 2 37 37 H 1.09006 * 110.49493 * 278.45737 * 16 15 4 38 38 H 1.08997 * 110.34913 * 156.05713 * 16 15 4 39 39 H 1.07999 * 119.55995 * 359.97438 * 21 20 18 40 40 H 1.07996 * 120.07454 * 180.02562 * 22 21 20 41 41 H 1.08008 * 120.63266 * 359.93196 * 24 23 22 42 42 H 1.08004 * 119.04563 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.05913 * 180.27115 * 27 26 25 44 44 H 1.08005 * 120.34646 * 359.97209 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 2.3556 -0.0453 2.0189 6 7 1.0531 -1.6875 1.7471 7 6 1.0691 -2.0643 3.0636 8 1 1.8228 -1.6700 3.7290 9 6 0.1166 -2.9531 3.5426 10 7 -0.8023 -3.4334 2.7318 11 14 0.1388 -3.4678 5.3382 12 1 -0.6966 -2.5311 6.1320 13 1 -0.4037 -4.8443 5.4655 14 1 1.5344 -3.4370 5.8448 15 6 3.2917 -1.5108 0.6892 16 6 2.8130 -1.8794 -0.7395 17 7 2.0299 -0.7124 -1.1849 18 6 1.8049 -0.3602 -2.4663 19 8 1.2262 0.6787 -2.7184 20 6 2.2616 -1.2370 -3.5647 21 6 2.4409 -2.6121 -3.3300 22 6 2.8594 -3.4401 -4.3225 23 6 3.1188 -2.9223 -5.6014 24 6 3.5530 -3.7381 -6.6614 25 6 3.7846 -3.1659 -7.8757 26 7 3.6117 -1.8677 -8.0831 27 6 3.2091 -1.0462 -7.1423 28 6 2.9421 -1.5357 -5.8521 29 6 2.5096 -0.6968 -4.8164 30 1 -0.3634 -1.0277 -0.0079 31 1 -0.3634 0.5070 0.8939 32 1 -0.3634 0.5206 -0.8861 33 1 0.3763 -2.0418 1.1494 34 1 -1.4676 -4.0547 3.0666 35 1 4.1681 -0.8635 0.6564 36 1 3.4924 -2.4071 1.2762 37 1 2.1851 -2.7700 -0.7138 38 1 3.6680 -2.0359 -1.3972 39 1 2.2434 -3.0152 -2.3477 40 1 2.9924 -4.4940 -4.1280 41 1 3.7008 -4.7980 -6.5153 42 1 4.1178 -3.7877 -8.6935 43 1 3.0784 0.0035 -7.3602 44 1 2.3704 0.3597 -4.9921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987308142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:35 Heat of formation + Delta-G solvation = 32.449056 kcal Electronic energy + Delta-G solvation = -27017.013883 eV Core-core repulsion = 23320.190827 eV Total energy + Delta-G solvation = -3696.823056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05879 -41.17673 -39.06923 -37.96632 -35.79641 -34.02891 -33.61906 -32.48514 -31.96331 -30.90512 -30.26941 -26.89911 -26.11451 -25.41083 -24.90427 -23.66381 -23.21585 -21.46504 -20.36461 -19.49109 -19.10876 -18.34957 -17.80813 -17.53158 -16.80479 -16.30621 -16.21374 -16.00161 -15.67716 -15.50183 -15.16441 -14.99698 -14.73769 -14.55313 -14.47415 -14.27208 -13.94266 -13.88770 -13.35489 -13.01246 -12.98120 -12.90257 -12.83503 -12.53668 -12.40127 -12.31811 -12.11691 -12.04184 -11.60464 -11.45880 -11.24893 -11.04701 -10.91196 -10.50888 -10.18166 -9.72562 -9.10465 -8.98297 -7.90678 -5.18586 -0.80792 -0.33223 0.77174 1.48376 1.51145 1.52221 1.59787 1.89254 2.22687 2.58949 3.03381 3.29058 3.42723 3.45425 3.58224 3.62986 3.73864 3.82061 3.88099 3.94993 4.01040 4.05194 4.22677 4.27163 4.31186 4.40167 4.53944 4.63790 4.64843 4.68514 4.78764 4.81231 4.87264 4.92746 4.93790 5.04559 5.18191 5.20418 5.30823 5.33711 5.36697 5.44542 5.59090 5.60474 5.70953 6.30708 6.47926 6.94827 7.02401 7.38587 8.11518 8.35512 9.32418 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.002798 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.887304 B =10003.053843 C =10669.720321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.131 3.869 3 H 0.082 0.918 4 C 0.164 3.836 5 H 0.076 0.924 6 N -0.723 5.723 7 C -0.233 4.233 8 H 0.081 0.919 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.967 3.033 12 H -0.293 1.293 13 H -0.301 1.301 14 H -0.267 1.267 15 C -0.148 4.148 16 C 0.105 3.895 17 N -0.601 5.601 18 C 0.567 3.433 19 O -0.575 6.575 20 C -0.142 4.142 21 C -0.091 4.091 22 C -0.109 4.109 23 C -0.022 4.022 24 C -0.154 4.154 25 C 0.073 3.927 26 N -0.513 5.513 27 C 0.152 3.848 28 C -0.134 4.134 29 C -0.021 4.021 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.170 0.830 42 H 0.180 0.820 43 H 0.186 0.814 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.564 0.140 -17.793 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.027 3.973 3 H 0.100 0.900 4 C 0.054 3.946 5 H 0.094 0.906 6 N -0.364 5.364 7 C -0.365 4.365 8 H 0.099 0.901 9 C -0.264 4.264 10 N -0.619 5.619 11 Si 0.797 3.203 12 H -0.221 1.221 13 H -0.228 1.228 14 H -0.192 1.192 15 C -0.189 4.189 16 C -0.017 4.017 17 N -0.332 5.332 18 C 0.358 3.642 19 O -0.457 6.457 20 C -0.145 4.145 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.028 4.028 24 C -0.174 4.174 25 C -0.069 4.069 26 N -0.221 5.221 27 C -0.019 4.019 28 C -0.137 4.137 29 C -0.042 4.042 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.212 0.788 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.164 0.836 40 H 0.182 0.818 41 H 0.187 0.813 42 H 0.197 0.803 43 H 0.203 0.797 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.514 0.862 -18.674 22.496 hybrid contribution -1.063 -0.757 1.861 2.273 sum 11.451 0.105 -16.813 20.343 Atomic orbital electron populations 1.21759 0.95551 1.01147 1.01023 1.21899 0.94189 0.96392 0.84813 0.89977 1.21398 0.89270 0.91333 0.92565 0.90637 1.42662 1.33785 1.51935 1.08053 1.19613 1.09936 1.19553 0.87376 0.90145 1.25447 0.98354 1.01259 1.01352 1.69804 1.19577 1.36740 1.35769 0.85234 0.77802 0.76439 0.80808 1.22094 1.22797 1.19218 1.23456 0.98670 1.02016 0.94773 1.22697 0.94926 0.87618 0.96432 1.48535 1.51509 1.28764 1.04434 1.18300 0.78944 0.85079 0.81923 1.90731 1.44631 1.26400 1.83929 1.19832 1.05982 0.94611 0.94031 1.21691 0.96024 0.91840 1.01434 1.21180 0.99311 1.01444 0.90717 1.18634 0.95954 0.92787 0.95386 1.22258 1.00161 1.02253 0.92695 1.22752 0.95807 0.90828 0.97552 1.67529 1.13241 1.05817 1.35488 1.23628 0.90895 1.00738 0.86642 1.19101 1.04045 0.94252 0.96255 1.21453 0.92166 1.00535 0.90037 0.93830 0.92047 0.93328 0.78825 0.94256 0.89139 0.90201 0.91546 0.88300 0.83595 0.81766 0.81260 0.80313 0.79730 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.52 71.98 0.61 -4.57 16 2 C 0.13 4.41 3.39 45.34 0.15 4.56 16 3 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.16 5.79 3.48 46.18 0.16 5.95 16 5 H 0.08 2.61 8.09 -2.39 -0.02 2.59 16 6 N -0.72 -32.85 4.55 -317.34 -1.44 -34.30 16 7 C -0.23 -11.84 9.96 84.03 0.84 -11.01 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 10 N -0.97 -56.66 13.06 21.65 0.28 -56.37 16 11 Si 0.97 44.12 29.55 68.60 2.03 46.14 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 13 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 C -0.15 -4.21 6.78 32.06 0.22 -3.99 16 16 C 0.10 2.78 4.96 86.93 0.43 3.21 16 17 N -0.60 -18.48 3.06 -791.08 -2.42 -20.90 16 18 C 0.57 18.16 7.38 86.77 0.64 18.80 16 19 O -0.58 -21.88 15.81 -3.91 -0.06 -21.95 16 20 C -0.14 -3.67 5.67 -20.09 -0.11 -3.78 16 21 C -0.09 -1.99 7.96 22.31 0.18 -1.82 16 22 C -0.11 -1.93 9.77 22.24 0.22 -1.71 16 23 C -0.02 -0.42 5.75 -21.24 -0.12 -0.54 16 24 C -0.15 -2.18 9.87 22.38 0.22 -1.96 16 25 C 0.07 1.11 11.07 84.11 0.93 2.04 16 26 N -0.51 -9.92 10.30 -195.42 -2.01 -11.93 16 27 C 0.15 2.77 11.05 85.35 0.94 3.72 16 28 C -0.13 -2.75 5.74 -21.32 -0.12 -2.87 16 29 C -0.02 -0.48 9.36 22.81 0.21 -0.27 16 30 H 0.04 1.84 6.21 -2.38 -0.01 1.83 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.05 1.85 7.06 -2.39 -0.02 1.84 16 33 H 0.38 18.84 5.69 -92.70 -0.53 18.31 16 34 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 1.92 6.81 -2.38 -0.02 1.90 16 38 H 0.10 2.08 6.81 -2.39 -0.02 2.06 16 39 H 0.15 3.20 4.52 -2.91 -0.01 3.19 16 40 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.15 3.16 7.81 -2.91 -0.02 3.14 16 Total: -1.00 -67.59 357.80 2.74 -64.85 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.51 Total: 32.12 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 5.86 Total: 2.34 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.60 Total: -123.50 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.59 2.74 -64.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987308142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.296 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds