Wall clock time and date at job start Tue Mar 31 2020 14:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.00361 * 2 1 4 4 C 1.54335 * 109.99222 * 238.96740 * 2 1 3 5 5 H 1.09002 * 110.66802 * 337.04343 * 4 2 1 6 6 N 1.46489 * 110.85389 * 100.19777 * 4 2 1 7 7 C 1.36937 * 120.00285 * 200.14591 * 6 4 2 8 8 H 1.08001 * 120.00090 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00342 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00320 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99894 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.46753 * 90.00456 * 11 9 7 13 13 H 1.48504 * 109.46995 * 210.00248 * 11 9 7 14 14 H 1.48501 * 109.46990 * 330.00351 * 11 9 7 15 15 C 1.55162 * 103.02094 * 218.66860 * 4 2 1 16 16 C 1.54911 * 101.58273 * 35.30339 * 15 4 2 17 17 N 1.47023 * 109.88421 * 121.09824 * 2 1 3 18 18 C 1.34780 * 125.64554 * 298.39515 * 17 2 1 19 19 O 1.21563 * 119.99905 * 3.28015 * 18 17 2 20 20 C 1.47776 * 119.99645 * 183.28005 * 18 17 2 21 21 C 1.40650 * 119.70027 * 326.35045 * 20 18 17 22 22 C 1.35854 * 120.87477 * 180.02562 * 21 20 18 23 23 C 1.40388 * 119.84398 * 0.29938 * 22 21 20 24 24 C 1.40640 * 121.97924 * 179.70406 * 23 22 21 25 25 C 1.36219 * 118.73030 * 180.02562 * 24 23 22 26 26 N 1.32590 * 121.90566 * 359.97438 * 25 24 23 27 27 C 1.31251 * 122.73801 * 359.41367 * 26 25 24 28 28 C 1.40543 * 119.87989 * 0.90190 * 27 26 25 29 29 C 1.38567 * 119.69978 * 146.37151 * 20 18 17 30 30 H 1.09000 * 109.46969 * 300.36038 * 1 2 3 31 31 H 1.08998 * 109.47111 * 60.35273 * 1 2 3 32 32 H 1.09000 * 109.47260 * 180.35389 * 1 2 3 33 33 H 0.96999 * 120.00378 * 20.14425 * 6 4 2 34 34 H 0.96998 * 120.00175 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00038 * 277.23315 * 15 4 2 36 36 H 1.08996 * 111.00313 * 153.37641 * 15 4 2 37 37 H 1.09004 * 110.36678 * 204.15663 * 16 15 4 38 38 H 1.09001 * 110.46349 * 81.87724 * 16 15 4 39 39 H 1.08001 * 119.56366 * 0.02562 * 21 20 18 40 40 H 1.07999 * 120.07657 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.63443 * 359.97438 * 24 23 22 42 42 H 1.08007 * 119.04796 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.05510 * 180.02562 * 27 26 25 44 44 H 1.08005 * 120.34263 * 359.95210 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3067 -1.4404 -1.6226 6 7 2.4637 0.1969 -2.2862 7 6 2.5655 -0.2211 -3.5863 8 1 2.3460 -1.2471 -3.8424 9 6 2.9508 0.6737 -4.5750 10 7 3.0482 0.2721 -5.8247 11 14 3.3297 2.4486 -4.1322 12 1 4.7712 2.5788 -3.8001 13 1 3.0061 3.3264 -5.2855 14 1 2.5130 2.8512 -2.9591 15 6 3.2864 -1.5184 -0.6915 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.0927 0.5879 2.7198 20 6 2.4321 -1.1310 3.5622 21 6 2.6305 -2.5159 3.4172 22 6 3.2020 -3.2460 4.4101 23 6 3.5963 -2.6169 5.6016 24 6 4.1862 -3.3301 6.6606 25 6 4.5430 -2.6530 7.7874 26 7 4.3502 -1.3470 7.9109 27 6 3.8166 -0.6154 6.9608 28 6 3.4067 -1.2184 5.7594 29 6 2.8166 -0.4812 4.7241 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3634 -1.0276 0.0063 33 1 2.6604 1.1185 -2.0564 34 1 3.3170 0.8975 -6.5156 35 1 4.1669 -0.8769 -0.6579 36 1 3.4806 -2.4155 -1.2792 37 1 3.6656 -2.0413 1.3932 38 1 2.1806 -2.7723 0.7133 39 1 2.3245 -3.0053 2.5044 40 1 3.3486 -4.3086 4.2849 41 1 4.3524 -4.3943 6.5821 42 1 4.9961 -3.1957 8.6040 43 1 3.6798 0.4457 7.1077 44 1 2.6626 0.5825 4.8308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987308145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:41 Heat of formation + Delta-G solvation = 25.895073 kcal Electronic energy + Delta-G solvation = -26723.205182 eV Core-core repulsion = 23026.097924 eV Total energy + Delta-G solvation = -3697.107258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05272 -41.17819 -39.06124 -37.97143 -36.07792 -34.03814 -33.74080 -32.75211 -31.98843 -31.18818 -30.53402 -27.00863 -26.07918 -25.09862 -24.42563 -23.70509 -23.19981 -21.80642 -20.89334 -19.56248 -19.20818 -18.37014 -17.87163 -17.57921 -16.70480 -16.45080 -16.22949 -15.98715 -15.88651 -15.44599 -15.17040 -14.86471 -14.71559 -14.65157 -14.58319 -14.42804 -13.94973 -13.85340 -13.54368 -13.38612 -13.07477 -13.02395 -12.92650 -12.63130 -12.47590 -12.31020 -12.25065 -11.96489 -11.81063 -11.58252 -11.25106 -11.08086 -10.94455 -10.50567 -10.16733 -9.79020 -9.32728 -9.09750 -8.02317 -5.36275 -0.79485 -0.31096 0.77983 1.38686 1.39057 1.46149 1.47674 1.77129 2.19096 2.47327 3.03400 3.23603 3.31140 3.45286 3.50607 3.58683 3.61285 3.71665 3.82584 3.91055 4.00953 4.05354 4.11672 4.24949 4.32104 4.35922 4.45272 4.62757 4.65047 4.66194 4.68076 4.79273 4.85961 4.88912 4.93828 4.99981 5.16440 5.21775 5.22254 5.30169 5.31290 5.40475 5.61293 5.72086 5.77614 6.21236 6.42923 6.95391 6.98467 7.05765 7.80662 7.97917 9.18427 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.002622 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.460857 B =10676.364721 C =10832.408660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.131 3.869 3 H 0.056 0.944 4 C 0.174 3.826 5 H 0.074 0.926 6 N -0.745 5.745 7 C -0.222 4.222 8 H 0.069 0.931 9 C -0.058 4.058 10 N -0.979 5.979 11 Si 0.944 3.056 12 H -0.280 1.280 13 H -0.298 1.298 14 H -0.258 1.258 15 C -0.149 4.149 16 C 0.099 3.901 17 N -0.601 5.601 18 C 0.568 3.432 19 O -0.575 6.575 20 C -0.137 4.137 21 C -0.084 4.084 22 C -0.104 4.104 23 C -0.025 4.025 24 C -0.151 4.151 25 C 0.069 3.931 26 N -0.514 5.514 27 C 0.147 3.853 28 C -0.133 4.133 29 C -0.030 4.030 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.363 0.637 34 H 0.257 0.743 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.173 0.827 42 H 0.178 0.822 43 H 0.181 0.819 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 -10.573 27.220 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 H 0.074 0.926 4 C 0.065 3.935 5 H 0.092 0.908 6 N -0.387 5.387 7 C -0.353 4.353 8 H 0.086 0.914 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.773 3.227 12 H -0.207 1.207 13 H -0.225 1.225 14 H -0.183 1.183 15 C -0.190 4.190 16 C -0.022 4.022 17 N -0.333 5.333 18 C 0.359 3.641 19 O -0.456 6.456 20 C -0.140 4.140 21 C -0.103 4.103 22 C -0.122 4.122 23 C -0.030 4.030 24 C -0.170 4.170 25 C -0.074 4.074 26 N -0.222 5.222 27 C -0.024 4.024 28 C -0.135 4.135 29 C -0.051 4.051 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.196 0.804 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.175 0.825 40 H 0.190 0.810 41 H 0.191 0.809 42 H 0.195 0.805 43 H 0.198 0.802 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.812 -9.938 28.065 29.828 hybrid contribution -0.054 1.228 -1.331 1.811 sum 1.758 -8.711 26.735 28.173 Atomic orbital electron populations 1.21985 0.93919 1.02730 1.02024 1.21684 0.95139 0.95716 0.84794 0.92630 1.21413 0.95265 0.90904 0.85967 0.90817 1.42703 1.82722 1.09210 1.04100 1.18974 1.36715 0.96123 0.83469 0.91356 1.25364 1.02680 1.01787 0.95138 1.69849 1.56198 1.36054 1.00871 0.85573 0.78394 0.81452 0.77327 1.20661 1.22466 1.18298 1.23398 0.98935 1.01598 0.95024 1.22849 0.96009 0.88038 0.95323 1.48455 1.51842 1.28915 1.04127 1.18347 0.80500 0.83457 0.81800 1.90757 1.40016 1.31020 1.83809 1.19789 1.04265 0.95366 0.94554 1.21555 0.96320 0.91651 1.00763 1.21236 0.98085 1.01783 0.91066 1.18663 0.96053 0.92464 0.95831 1.22281 0.98999 1.02759 0.93001 1.22757 0.96603 0.89742 0.98273 1.67518 1.13963 1.08818 1.31943 1.23589 0.90875 1.00887 0.87061 1.19072 1.02997 0.94663 0.96791 1.21394 0.92805 1.00494 0.90407 0.92579 0.91878 0.91239 0.80396 0.93388 0.91885 0.89190 0.88262 0.88017 0.82503 0.81033 0.80934 0.80487 0.80227 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.11 71.98 0.66 -3.81 16 2 C 0.13 4.11 3.23 45.34 0.15 4.26 16 3 H 0.06 1.98 7.69 -2.39 -0.02 1.96 16 4 C 0.17 5.89 3.12 46.19 0.14 6.04 16 5 H 0.07 2.53 7.83 -2.39 -0.02 2.51 16 6 N -0.74 -32.66 5.06 -317.32 -1.60 -34.27 16 7 C -0.22 -11.87 10.46 84.03 0.88 -10.99 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 10 N -0.98 -60.92 13.97 21.65 0.30 -60.61 16 11 Si 0.94 44.88 27.74 68.60 1.90 46.78 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 14 H -0.26 -11.32 6.52 99.48 0.65 -10.67 16 15 C -0.15 -4.09 6.77 31.99 0.22 -3.88 16 16 C 0.10 1.98 5.08 86.86 0.44 2.42 16 17 N -0.60 -15.84 3.06 -791.45 -2.43 -18.27 16 18 C 0.57 15.91 7.36 86.77 0.64 16.55 16 19 O -0.58 -20.28 15.68 -3.91 -0.06 -20.34 16 20 C -0.14 -2.93 5.57 -20.09 -0.11 -3.05 16 21 C -0.08 -1.26 7.79 22.31 0.17 -1.09 16 22 C -0.10 -1.24 9.77 22.24 0.22 -1.02 16 23 C -0.02 -0.37 5.75 -21.24 -0.12 -0.50 16 24 C -0.15 -1.69 9.87 22.39 0.22 -1.47 16 25 C 0.07 0.92 11.07 84.11 0.93 1.85 16 26 N -0.51 -9.36 10.30 -195.41 -2.01 -11.38 16 27 C 0.15 2.52 11.05 85.34 0.94 3.46 16 28 C -0.13 -2.41 5.74 -21.32 -0.12 -2.53 16 29 C -0.03 -0.61 9.37 22.81 0.21 -0.40 16 30 H 0.06 1.79 6.78 -2.39 -0.02 1.78 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.36 15.91 5.38 -92.71 -0.50 15.41 16 34 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.10 1.59 6.51 -2.38 -0.02 1.57 16 38 H 0.10 1.46 7.17 -2.39 -0.02 1.45 16 39 H 0.16 1.78 5.13 -2.91 -0.01 1.76 16 40 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 42 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 44 H 0.14 2.81 7.95 -2.91 -0.02 2.79 16 Total: -1.00 -73.58 358.74 2.51 -71.08 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.47 Total: 23.99 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.93 Total: 3.01 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -5.74 Total: -124.52 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Total: -73.58 2.51 -71.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987308145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.970 kcal (2) G-P(sol) polarization free energy of solvation -73.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds