Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87538 * 2 1 4 4 C 1.54332 * 109.88205 * 238.98350 * 2 1 3 5 5 H 1.09001 * 110.71550 * 336.93275 * 4 2 1 6 6 N 1.46505 * 110.71747 * 100.02536 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 C 1.55150 * 102.94391 * 218.38859 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88647 * 121.17882 * 2 1 3 18 18 C 1.34781 * 125.64764 * 298.32542 * 17 2 1 19 19 O 1.21501 * 119.99741 * 359.97438 * 18 17 2 20 20 C 1.48274 * 119.99862 * 179.97438 * 18 17 2 21 21 C 1.40282 * 119.23874 * 179.72613 * 20 18 17 22 22 C 1.36511 * 119.81856 * 179.69360 * 21 20 18 23 23 C 1.40755 * 118.24035 * 0.58041 * 22 21 20 24 24 C 1.40418 * 121.28118 * 179.64354 * 23 22 21 25 25 C 1.36136 * 119.64479 * 179.97438 * 24 23 22 26 26 C 1.39427 * 120.92114 * 0.04394 * 25 24 23 27 27 C 1.35991 * 121.08428 * 359.97438 * 26 25 24 28 28 C 1.40829 * 119.73443 * 359.97438 * 27 26 25 29 29 N 1.31871 * 119.24311 * 359.97438 * 20 18 17 30 30 H 1.09002 * 109.46953 * 181.01863 * 1 2 3 31 31 H 1.09008 * 109.46982 * 301.01098 * 1 2 3 32 32 H 1.08997 * 109.47268 * 61.01462 * 1 2 3 33 33 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 34 34 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 35 35 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 36 36 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 37 37 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 38 38 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 39 39 H 1.08003 * 120.09081 * 359.97438 * 21 20 18 40 40 H 1.07990 * 120.87975 * 180.26874 * 22 21 20 41 41 H 1.07990 * 120.17786 * 0.02676 * 24 23 22 42 42 H 1.08007 * 119.53789 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.45782 * 179.97438 * 26 25 24 44 44 H 1.08005 * 120.13654 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 1.3039 -1.4414 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.4581 -0.1895 -3.6003 8 1 2.1645 -1.1941 -3.8667 9 6 2.8322 0.7097 -4.5895 10 7 3.1894 1.9341 -4.2649 11 14 2.8284 0.1818 -6.3814 12 1 1.4570 -0.2320 -6.7726 13 1 3.2653 1.3172 -7.2328 14 1 3.7607 -0.9598 -6.5630 15 6 3.2876 -1.5133 -0.6946 16 6 2.8145 -1.8805 0.7340 17 7 2.0301 -0.7157 1.1828 18 6 1.8086 -0.3648 2.4652 19 8 1.1447 0.6205 2.7193 20 6 2.3751 -1.1812 3.5656 21 6 2.1395 -0.7981 4.8944 22 6 2.6502 -1.5446 5.9168 23 6 3.4158 -2.6808 5.5941 24 6 3.9776 -3.4898 6.5949 25 6 4.7119 -4.5815 6.2450 26 6 4.9157 -4.9084 4.9050 27 6 4.3876 -4.1483 3.9087 28 6 3.6208 -3.0113 4.2291 29 7 3.0930 -2.2479 3.2727 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3633 0.5295 0.8808 32 1 -0.3633 0.4980 -0.8989 33 1 2.7187 1.1017 -2.0481 34 1 3.4512 2.5624 -4.9562 35 1 3.4851 -2.4092 -1.2832 36 1 4.1654 -0.8679 -0.6618 37 1 3.6717 -2.0358 1.3893 38 1 2.1886 -2.7725 0.7089 39 1 1.5518 0.0825 5.1079 40 1 2.4758 -1.2679 6.9460 41 1 3.8272 -3.2479 7.6365 42 1 5.1429 -5.2028 7.0162 43 1 5.5026 -5.7796 4.6542 44 1 4.5554 -4.4154 2.8758 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987386209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = 29.620181 kcal Electronic energy + Delta-G solvation = -26871.084092 eV Core-core repulsion = 23174.138367 eV Total energy + Delta-G solvation = -3696.945725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14721 -40.98525 -38.98053 -37.80431 -35.97415 -34.65534 -33.38811 -32.37993 -31.71169 -31.10707 -30.47529 -26.89203 -26.36819 -25.00379 -24.56786 -23.64045 -23.03714 -21.81933 -20.77890 -19.22832 -18.99395 -18.60998 -18.00827 -17.49970 -16.66674 -16.56591 -16.20896 -15.73292 -15.52956 -15.41827 -15.17929 -15.12773 -14.81438 -14.54342 -14.30000 -14.15571 -14.00440 -13.60767 -13.33038 -13.15501 -12.92453 -12.70524 -12.69702 -12.59291 -12.46826 -12.38325 -12.20989 -12.11579 -11.73541 -11.66422 -11.59678 -11.29658 -10.93768 -10.38628 -9.91165 -9.64605 -9.25657 -9.02869 -7.93608 -5.23975 -0.84368 -0.33609 0.93891 1.37090 1.49215 1.52431 1.58259 1.76998 2.20109 2.57424 2.87241 3.08969 3.37308 3.50466 3.61550 3.73257 3.75306 3.83293 3.87105 4.01737 4.13073 4.18965 4.26888 4.34997 4.39858 4.40585 4.50429 4.54623 4.65369 4.77357 4.82785 4.90982 4.97917 5.03637 5.06473 5.11933 5.19178 5.21247 5.33826 5.40229 5.42314 5.47970 5.52158 5.54279 5.88665 6.25972 6.40629 6.57868 6.98423 7.32607 8.03556 8.28704 9.29760 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.002790 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.564014 B =10033.693967 C =11037.703710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.128 3.872 3 H 0.050 0.950 4 C 0.174 3.826 5 H 0.074 0.926 6 N -0.727 5.727 7 C -0.239 4.239 8 H 0.083 0.917 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.975 3.025 12 H -0.277 1.277 13 H -0.299 1.299 14 H -0.275 1.275 15 C -0.150 4.150 16 C 0.117 3.883 17 N -0.588 5.588 18 C 0.571 3.429 19 O -0.568 6.568 20 C 0.100 3.900 21 C -0.142 4.142 22 C -0.046 4.046 23 C -0.101 4.101 24 C -0.102 4.102 25 C -0.104 4.104 26 C -0.093 4.093 27 C -0.107 4.107 28 C 0.095 3.905 29 N -0.449 5.449 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.371 0.629 34 H 0.251 0.749 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.184 0.816 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -16.905 26.191 31.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.024 3.976 3 H 0.069 0.931 4 C 0.064 3.936 5 H 0.092 0.908 6 N -0.366 5.366 7 C -0.370 4.370 8 H 0.101 0.899 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.804 3.196 12 H -0.203 1.203 13 H -0.226 1.226 14 H -0.201 1.201 15 C -0.191 4.191 16 C -0.006 4.006 17 N -0.319 5.319 18 C 0.359 3.641 19 O -0.447 6.447 20 C -0.052 4.052 21 C -0.163 4.163 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.113 4.113 27 C -0.126 4.126 28 C -0.028 4.028 29 N -0.161 5.161 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.203 0.797 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.167 0.833 40 H 0.202 0.798 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.177 0.823 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.236 -16.753 25.328 30.450 hybrid contribution -0.076 1.096 -0.612 1.257 sum 2.160 -15.657 24.717 29.338 Atomic orbital electron populations 1.21931 0.93803 1.02380 1.02003 1.21792 0.95241 0.95573 0.84975 0.93145 1.21407 0.94863 0.90996 0.86373 0.90829 1.42501 1.79667 1.12054 1.02417 1.19595 1.36506 0.97037 0.83882 0.89921 1.25597 1.02872 0.96021 1.02276 1.69833 1.53311 1.05788 1.33254 0.85186 0.78050 0.76592 0.79766 1.20295 1.22586 1.20133 1.23462 0.99018 1.01249 0.95356 1.22676 0.96306 0.86955 0.94621 1.48450 1.50646 1.28682 1.04132 1.18058 0.80328 0.84025 0.81689 1.90726 1.41981 1.28361 1.83632 1.21067 0.97286 0.93658 0.93199 1.21785 1.01201 1.02019 0.91309 1.21861 0.92551 0.91568 1.01174 1.19316 0.99295 0.97272 0.94418 1.21382 0.96727 0.94382 0.99523 1.21476 0.96850 0.96758 0.97032 1.21356 0.97819 0.99647 0.92495 1.21090 0.96875 0.92918 1.01713 1.19393 0.98286 0.96065 0.89101 1.68028 1.07342 1.04108 1.36657 0.91503 0.92625 0.91788 0.79681 0.94073 0.89249 0.92816 0.87611 0.90306 0.83297 0.79844 0.81941 0.81962 0.82315 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.09 71.98 0.65 -4.46 16 2 C 0.13 4.97 3.21 45.34 0.15 5.12 16 3 H 0.05 2.24 7.71 -2.39 -0.02 2.22 16 4 C 0.17 6.99 3.14 46.18 0.15 7.14 16 5 H 0.07 2.89 7.80 -2.39 -0.02 2.87 16 6 N -0.73 -37.01 5.22 -317.31 -1.66 -38.67 16 7 C -0.24 -13.06 9.96 84.04 0.84 -12.22 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 10 N -0.97 -60.12 13.06 21.65 0.28 -59.83 16 11 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 C -0.15 -5.24 6.77 31.98 0.22 -5.02 16 16 C 0.12 3.53 5.93 86.85 0.51 4.04 16 17 N -0.59 -20.55 3.06 -790.93 -2.42 -22.97 16 18 C 0.57 20.17 7.63 86.91 0.66 20.84 16 19 O -0.57 -22.80 15.33 -3.72 -0.06 -22.86 16 20 C 0.10 2.91 6.73 42.31 0.28 3.19 16 21 C -0.14 -3.28 9.54 22.36 0.21 -3.07 16 22 C -0.05 -0.74 9.88 22.48 0.22 -0.52 16 23 C -0.10 -1.73 5.75 -21.22 -0.12 -1.85 16 24 C -0.10 -1.02 9.77 22.31 0.22 -0.80 16 25 C -0.10 -0.82 9.95 22.07 0.22 -0.60 16 26 C -0.09 -0.96 9.94 22.03 0.22 -0.75 16 27 C -0.11 -1.79 9.99 22.38 0.22 -1.57 16 28 C 0.10 2.07 6.61 40.47 0.27 2.34 16 29 N -0.45 -12.03 6.51 -177.76 -1.16 -13.18 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 2.04 6.91 -2.38 -0.02 2.03 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.37 20.79 7.56 -92.71 -0.70 20.09 16 34 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.11 3.09 5.88 -2.38 -0.01 3.07 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.15 3.33 7.60 -2.91 -0.02 3.31 16 40 H 0.18 1.35 8.06 -2.92 -0.02 1.33 16 41 H 0.16 0.57 8.06 -2.92 -0.02 0.55 16 42 H 0.16 0.22 8.06 -2.91 -0.02 0.19 16 43 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -72.90 364.05 2.73 -70.18 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.32 Total: 31.40 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.39 Total: 7.96 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -4.96 Total: -134.66 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -72.90 2.73 -70.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987386209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.798 kcal (2) G-P(sol) polarization free energy of solvation -72.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds