Wall clock time and date at job start Tue Mar 31 2020 14:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.99549 * 2 1 4 4 C 1.54318 * 109.77707 * 121.15179 * 2 1 3 5 5 H 1.09004 * 110.91973 * 23.47640 * 4 2 1 6 6 N 1.46498 * 110.59250 * 260.14874 * 4 2 1 7 7 C 1.36938 * 120.00050 * 160.18950 * 6 4 2 8 8 H 1.08002 * 119.99673 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99972 * 179.97438 * 7 6 4 10 10 N 1.31614 * 120.00441 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99687 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47453 * 60.00251 * 11 9 7 13 13 H 1.48504 * 109.47001 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47243 * 300.00039 * 11 9 7 15 15 C 1.55156 * 102.86446 * 141.88587 * 4 2 1 16 16 C 1.54915 * 101.58026 * 324.30889 * 15 4 2 17 17 N 1.47016 * 109.88481 * 238.90602 * 2 1 3 18 18 C 1.34776 * 125.64951 * 61.67550 * 17 2 1 19 19 O 1.21602 * 119.99990 * 355.11151 * 18 17 2 20 20 C 1.47452 * 119.99900 * 175.38375 * 18 17 2 21 21 C 1.38864 * 120.46157 * 42.04645 * 20 18 17 22 22 C 1.38897 * 120.67159 * 180.02562 * 21 20 18 23 23 C 1.36373 * 121.28079 * 359.97438 * 22 21 20 24 24 C 1.40397 * 119.98286 * 359.97438 * 23 22 21 25 25 C 1.40459 * 121.95743 * 180.02562 * 24 23 22 26 26 N 1.31290 * 119.88316 * 179.17343 * 25 24 23 27 27 C 1.32549 * 122.72810 * 0.85760 * 26 25 24 28 28 C 1.36336 * 121.82227 * 359.41537 * 27 26 25 29 29 C 1.40285 * 118.69749 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47372 * 179.63997 * 1 2 3 31 31 H 1.09001 * 109.47304 * 299.64194 * 1 2 3 32 32 H 1.08999 * 109.47045 * 59.64523 * 1 2 3 33 33 H 0.96999 * 120.00207 * 340.19704 * 6 4 2 34 34 H 0.97002 * 120.00282 * 180.02562 * 10 9 7 35 35 H 1.08997 * 111.00622 * 206.23044 * 15 4 2 36 36 H 1.08995 * 111.03468 * 82.39551 * 15 4 2 37 37 H 1.08999 * 110.36450 * 278.16665 * 16 15 4 38 38 H 1.09003 * 110.36475 * 155.84926 * 16 15 4 39 39 H 1.07997 * 119.66266 * 0.02562 * 21 20 18 40 40 H 1.08007 * 119.35920 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.01009 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.05716 * 359.97387 * 25 24 23 43 43 H 1.08004 * 119.08934 * 179.39395 * 27 26 25 44 44 H 1.07998 * 120.65008 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0521 -0.7512 1.2428 5 1 1.3050 -1.4513 1.6168 6 7 2.4472 0.1953 2.2887 7 6 2.5495 -0.2238 3.5884 8 1 2.3392 -1.2523 3.8422 9 6 2.9244 0.6730 4.5793 10 7 3.1811 1.9262 4.2700 11 14 3.0646 0.1010 6.3521 12 1 4.0781 -0.9803 6.4447 13 1 3.4783 1.2412 7.2089 14 1 1.7493 -0.4127 6.8120 15 6 3.2889 -1.5101 0.6934 16 6 2.8191 -1.8762 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.8085 -0.3612 -2.4656 19 8 1.0714 0.5717 -2.7208 20 6 2.4552 -1.1103 -3.5588 21 6 2.5309 -2.4961 -3.5139 22 6 3.1396 -3.2060 -4.5409 23 6 3.6785 -2.5690 -5.6196 24 6 3.6237 -1.1688 -5.7071 25 6 4.1647 -0.4704 -6.7990 26 7 4.0764 0.8387 -6.8469 27 6 3.5044 1.5539 -5.8887 28 6 2.9550 0.9696 -4.7861 29 6 3.0005 -0.4278 -4.6710 30 1 -0.3634 -1.0277 -0.0065 31 1 -0.3634 0.5083 0.8932 32 1 -0.3633 0.5193 -0.8868 33 1 2.6363 1.1190 2.0607 34 1 3.4435 2.5528 4.9625 35 1 3.4897 -2.4064 1.2801 36 1 4.1642 -0.8613 0.6629 37 1 2.1972 -2.7711 -0.7142 38 1 3.6777 -2.0263 -1.3912 39 1 2.1122 -3.0273 -2.6720 40 1 3.1870 -4.2836 -4.4842 41 1 4.1473 -3.1414 -6.4063 42 1 4.6412 -1.0102 -7.6041 43 1 3.4729 2.6292 -5.9838 44 1 2.4932 1.5707 -4.0169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987531376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:06 Heat of formation + Delta-G solvation = 41.495315 kcal Electronic energy + Delta-G solvation = -27105.881003 eV Core-core repulsion = 23409.450222 eV Total energy + Delta-G solvation = -3696.430781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28306 -39.87317 -37.68487 -37.23850 -34.22808 -33.21094 -32.00901 -31.25220 -30.94337 -30.04325 -28.91602 -25.37522 -24.85004 -24.00623 -23.66260 -23.03170 -22.03412 -20.26597 -19.28295 -18.34825 -17.43556 -17.27630 -16.84354 -16.51722 -16.15576 -15.08258 -14.99815 -14.71322 -14.61204 -14.34861 -13.90458 -13.72754 -13.66194 -13.45799 -13.12859 -12.99594 -12.74578 -12.44171 -12.30975 -12.10118 -11.90005 -11.71046 -11.57386 -11.21595 -11.07908 -10.86581 -10.63515 -10.45866 -10.32547 -10.10179 -9.88802 -9.77606 -9.55614 -9.37202 -8.98645 -8.54843 -8.30111 -7.08430 -5.85685 -3.16631 -0.06601 0.62195 1.48508 2.52950 2.85789 3.08732 3.38450 3.43282 3.44462 3.84707 4.16506 4.23783 4.40176 4.44914 4.50701 4.58829 4.67305 4.80810 4.94192 5.04206 5.15913 5.25351 5.34193 5.38856 5.45203 5.51099 5.57984 5.59202 5.66173 5.71316 5.72482 5.87069 5.95724 6.01934 6.06699 6.09995 6.23340 6.35162 6.38765 6.48426 6.51813 6.56004 6.65108 6.85800 7.59531 7.61203 7.74780 8.15870 8.31414 9.42917 9.96663 10.31316 11.36339 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.002831 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.917386 B = 9886.691291 C =10234.503760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.079 0.921 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.157 4.157 16 C 0.093 3.907 17 N -0.599 5.599 18 C 0.572 3.428 19 O -0.533 6.533 20 C -0.113 4.113 21 C -0.064 4.064 22 C -0.126 4.126 23 C -0.068 4.068 24 C -0.117 4.117 25 C 0.141 3.859 26 N -0.487 5.487 27 C 0.076 3.924 28 C -0.142 4.142 29 C 0.010 3.990 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -11.107 -20.390 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.097 0.903 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.030 4.030 17 N -0.332 5.332 18 C 0.360 3.640 19 O -0.411 6.411 20 C -0.116 4.116 21 C -0.084 4.084 22 C -0.144 4.144 23 C -0.088 4.088 24 C -0.119 4.119 25 C -0.030 4.030 26 N -0.195 5.195 27 C -0.067 4.067 28 C -0.162 4.162 29 C 0.004 3.996 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.181 0.819 43 H 0.173 0.827 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.661 -10.027 -21.030 23.308 hybrid contribution -0.110 -0.533 1.721 1.805 sum 0.551 -10.560 -19.309 22.015 Atomic orbital electron populations 1.22064 0.94631 1.01719 1.02921 1.21966 0.94635 0.96860 0.84112 0.90263 1.21249 0.93498 0.91645 0.87070 0.91615 1.42336 1.81158 1.08915 1.03081 1.19144 1.39708 0.95033 0.83797 0.91030 1.24766 1.01975 0.95607 0.98183 1.69648 1.52405 1.02895 1.32740 0.86256 0.77842 0.77314 0.84659 1.21187 1.21653 1.21159 1.23602 1.01523 1.01896 0.92763 1.22584 0.94671 0.88218 0.97492 1.48490 1.51302 1.28687 1.04713 1.17666 0.81371 0.83659 0.81295 1.90769 1.37357 1.29905 1.83114 1.19894 1.02232 0.94084 0.95349 1.21645 0.95489 0.92761 0.98547 1.20853 0.98919 1.00643 0.93959 1.21136 0.97068 0.92568 0.98027 1.18983 1.01631 0.94832 0.96500 1.23196 0.94518 0.90013 0.95323 1.67424 1.15303 1.08227 1.28501 1.22274 0.94405 1.00404 0.89630 1.22245 0.99385 0.94224 1.00336 1.17870 0.95365 0.93735 0.92633 0.93069 0.91035 0.91744 0.77958 0.93265 0.90409 0.90546 0.91452 0.91016 0.84533 0.84807 0.84540 0.81863 0.82722 0.83098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.10 37.15 0.34 -2.19 16 2 C 0.13 2.19 3.23 -66.96 -0.22 1.97 16 3 H 0.08 1.53 7.68 -51.93 -0.40 1.13 16 4 C 0.18 3.26 3.11 -66.10 -0.21 3.06 16 5 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16 6 N -0.71 -16.92 5.25 -51.65 -0.27 -17.19 16 7 C -0.25 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 11 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.16 -2.45 6.76 -24.58 -0.17 -2.62 16 16 C 0.09 1.17 5.26 -2.53 -0.01 1.16 16 17 N -0.60 -8.99 3.07 -164.27 -0.50 -9.50 16 18 C 0.57 8.90 6.90 -12.51 -0.09 8.81 16 19 O -0.53 -9.75 13.85 5.28 0.07 -9.67 16 20 C -0.11 -1.46 5.39 -104.70 -0.56 -2.02 16 21 C -0.06 -0.63 7.98 -39.11 -0.31 -0.94 16 22 C -0.13 -0.95 9.92 -40.01 -0.40 -1.35 16 23 C -0.07 -0.52 9.79 -39.44 -0.39 -0.90 16 24 C -0.12 -1.23 5.74 -106.88 -0.61 -1.84 16 25 C 0.14 1.38 11.05 -16.95 -0.19 1.19 16 26 N -0.49 -5.82 10.30 -13.11 -0.14 -5.95 16 27 C 0.08 0.91 11.07 -17.93 -0.20 0.71 16 28 C -0.14 -1.91 9.22 -39.50 -0.36 -2.27 16 29 C 0.01 0.13 5.76 -106.55 -0.61 -0.49 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.09 6.73 -51.93 -0.35 0.74 16 33 H 0.39 9.91 7.50 -40.82 -0.31 9.61 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.69 7.34 -51.93 -0.38 0.31 16 38 H 0.07 0.80 6.84 -51.93 -0.35 0.45 16 39 H 0.14 1.14 6.03 -52.49 -0.32 0.82 16 40 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.16 1.51 8.06 -52.48 -0.42 1.08 16 44 H 0.15 2.21 6.12 -52.49 -0.32 1.88 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -32.07 359.19 -9.72 -41.79 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.76 Total: 9.75 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -4.23 Total: -4.67 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.19 Total: -59.20 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.07 -9.72 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987531376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.281 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds