Wall clock time and date at job start Tue Mar 31 2020 14:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.99867 * 2 1 4 4 C 1.54330 * 109.99453 * 238.96067 * 2 1 3 5 5 C 1.55152 * 103.02492 * 218.66527 * 4 2 1 6 6 H 1.08997 * 111.00446 * 153.37378 * 5 4 2 7 7 N 1.46494 * 111.00481 * 277.23519 * 5 4 2 8 8 C 1.36946 * 119.99987 * 198.64819 * 7 5 4 9 9 H 1.07995 * 119.99715 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99833 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00504 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99823 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47044 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46989 * 119.99938 * 12 10 8 15 15 H 1.48497 * 109.47303 * 240.00022 * 12 10 8 16 16 C 1.54914 * 101.57789 * 35.30628 * 5 4 2 17 17 N 1.47019 * 109.88124 * 121.09207 * 2 1 3 18 18 C 1.34780 * 125.64931 * 298.39519 * 17 2 1 19 19 O 1.21582 * 119.99968 * 4.33102 * 18 17 2 20 20 C 1.47548 * 119.99836 * 184.33448 * 18 17 2 21 21 C 1.38697 * 120.38996 * 317.25872 * 20 18 17 22 22 C 1.38967 * 120.54154 * 180.02562 * 21 20 18 23 23 C 1.36219 * 121.23564 * 0.04909 * 22 21 20 24 24 C 1.40711 * 120.19983 * 0.22813 * 23 22 21 25 25 N 1.33686 * 120.93569 * 180.33842 * 24 23 22 26 26 C 1.31068 * 121.33941 * 179.74631 * 25 24 23 27 27 C 1.39342 * 121.70586 * 359.66503 * 26 25 24 28 28 C 1.36670 * 119.87254 * 0.02562 * 27 26 25 29 29 C 1.40477 * 118.16745 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47287 * 300.35895 * 1 2 3 31 31 H 1.09004 * 109.47340 * 60.35973 * 1 2 3 32 32 H 1.08996 * 109.46979 * 180.36182 * 1 2 3 33 33 H 1.09006 * 110.85456 * 100.19208 * 4 2 1 34 34 H 1.09000 * 110.66559 * 337.04789 * 4 2 1 35 35 H 0.96998 * 120.00357 * 18.64266 * 7 5 4 36 36 H 0.96993 * 120.00381 * 180.02562 * 11 10 8 37 37 H 1.09002 * 110.36448 * 204.15245 * 16 5 4 38 38 H 1.08997 * 110.46132 * 81.88116 * 16 5 4 39 39 H 1.08002 * 119.72892 * 0.02562 * 21 20 18 40 40 H 1.07995 * 119.38695 * 180.02562 * 22 21 20 41 41 H 1.07993 * 119.89647 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.14124 * 179.68378 * 26 25 24 43 43 H 1.07997 * 120.06435 * 180.02562 * 27 26 25 44 44 H 1.07995 * 120.91722 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2426 5 6 3.2864 -1.5183 -0.6914 6 1 3.4807 -2.4156 -1.2790 7 7 4.4699 -0.6561 -0.6463 8 6 5.7189 -1.2115 -0.5631 9 1 5.8313 -2.2851 -0.5305 10 6 6.8403 -0.3946 -0.5209 11 7 6.7032 0.9139 -0.5602 12 14 8.5440 -1.1522 -0.4068 13 1 8.4265 -2.6322 -0.3770 14 1 9.3475 -0.7435 -1.5869 15 1 9.2123 -0.6831 0.8336 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.0773 0.5764 2.7204 20 6 2.4496 -1.1151 3.5599 21 6 2.5065 -2.5003 3.5190 22 6 3.1102 -3.2130 4.5481 23 6 3.6591 -2.5770 5.6204 24 6 3.6195 -1.1732 5.7072 25 7 4.1595 -0.5336 6.7496 26 6 4.1314 0.7739 6.8362 27 6 3.5457 1.5609 5.8467 28 6 2.9812 0.9693 4.7516 29 6 3.0133 -0.4325 4.6648 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5082 -0.8932 32 1 -0.3633 -1.0276 0.0065 33 1 2.3598 -0.0450 -2.0192 34 1 1.3067 -1.4405 -1.6224 35 1 4.3689 0.3081 -0.6753 36 1 7.4869 1.4847 -0.5310 37 1 3.6655 -2.0411 1.3933 38 1 2.1807 -2.7721 0.7135 39 1 2.0782 -3.0295 2.6805 40 1 3.1444 -4.2912 4.4969 41 1 4.1225 -3.1523 6.4081 42 1 4.5740 1.2536 7.6966 43 1 3.5378 2.6364 5.9448 44 1 2.5223 1.5629 3.9749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989258462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:25 Heat of formation + Delta-G solvation = 41.063489 kcal Electronic energy + Delta-G solvation = -27887.743565 eV Core-core repulsion = 24191.294059 eV Total energy + Delta-G solvation = -3696.449506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01438 -39.70816 -37.48654 -36.82904 -34.05143 -33.36101 -31.91515 -31.35819 -30.55375 -29.69772 -28.48841 -25.68904 -24.63508 -23.85024 -23.61112 -23.32122 -21.45161 -20.07691 -19.05193 -18.21512 -17.31940 -17.01967 -16.83816 -16.43831 -15.84518 -14.96455 -14.74707 -14.54663 -14.34187 -14.02967 -13.88296 -13.77171 -13.39577 -13.28223 -13.14784 -12.94572 -12.54282 -12.31228 -12.03184 -11.98640 -11.72928 -11.62105 -11.34814 -11.20764 -10.98537 -10.79327 -10.68845 -10.46355 -10.35771 -10.04370 -9.92788 -9.77776 -9.29590 -9.08227 -8.77648 -8.35587 -8.18361 -7.08358 -5.86883 -3.17381 0.26099 0.84617 1.85490 2.73686 3.03502 3.34819 3.37264 3.42704 3.45360 4.15542 4.28059 4.48634 4.51301 4.74859 4.81289 4.85611 5.02799 5.05065 5.09543 5.13301 5.25581 5.31804 5.43541 5.47497 5.54082 5.60861 5.74477 5.79898 5.81073 5.84617 5.93168 5.97760 6.11064 6.13771 6.16498 6.27769 6.33763 6.35927 6.38728 6.51401 6.53764 6.63786 6.74038 6.80256 7.60567 7.80601 7.90302 8.30253 8.35881 9.42463 9.96862 10.31111 11.35095 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.005381 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.838154 B = 5202.464505 C = 6781.863785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.168 3.832 6 H 0.072 0.928 7 N -0.711 5.711 8 C -0.247 4.247 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.927 5.927 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.063 3.937 17 N -0.587 5.587 18 C 0.575 3.425 19 O -0.546 6.546 20 C -0.091 4.091 21 C -0.082 4.082 22 C -0.106 4.106 23 C -0.077 4.077 24 C 0.122 3.878 25 N -0.478 5.478 26 C 0.132 3.868 27 C -0.179 4.179 28 C -0.043 4.043 29 C -0.065 4.065 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.159 0.841 43 H 0.138 0.862 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.871 -5.201 8.093 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.090 0.910 7 N -0.351 5.351 8 C -0.378 4.378 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.575 5.575 12 Si 0.736 3.264 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.063 4.063 17 N -0.318 5.318 18 C 0.364 3.636 19 O -0.426 6.426 20 C -0.095 4.095 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.095 4.095 24 C 0.001 3.999 25 N -0.186 5.186 26 C -0.041 4.041 27 C -0.198 4.198 28 C -0.069 4.069 29 C -0.068 4.068 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.176 0.824 43 H 0.156 0.844 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.711 -5.379 8.884 14.919 hybrid contribution 0.718 0.507 -0.549 1.037 sum -9.992 -4.872 8.335 13.894 Atomic orbital electron populations 1.22147 0.95190 1.01844 1.02634 1.21522 0.93677 0.96731 0.84494 0.90677 1.23046 0.98160 1.00048 0.96352 1.21337 0.87019 0.94524 0.91514 0.91020 1.42333 1.00221 1.05218 1.87346 1.19237 0.83317 0.91802 1.43407 0.90922 1.24753 0.97947 0.95325 1.02387 1.69666 1.28879 1.02113 1.56802 0.86162 0.84727 0.78260 0.77287 1.20407 1.21744 1.21843 1.23603 0.94686 0.86600 1.01386 1.48318 1.50941 1.28370 1.04195 1.17699 0.80939 0.83494 0.81488 1.90716 1.38461 1.29953 1.83431 1.19844 1.00824 0.94045 0.94772 1.21506 0.97149 0.92745 0.98630 1.20803 0.97750 1.00555 0.93419 1.20911 0.98280 0.91825 0.98531 1.18781 0.96407 0.94233 0.90446 1.68023 1.16827 1.10728 1.23047 1.22942 0.94165 0.89320 0.97676 1.21939 1.00520 1.01808 0.95571 1.21809 0.93785 0.93573 0.97735 1.18544 0.99293 0.94375 0.94557 0.91351 0.91949 0.92847 0.89681 0.90623 0.78036 0.93427 0.89728 0.92492 0.84684 0.84661 0.84502 0.82392 0.84415 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.10 37.16 0.34 -1.80 16 2 C 0.14 2.17 3.48 -66.95 -0.23 1.93 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.14 -2.00 6.05 -24.90 -0.15 -2.15 16 5 C 0.17 2.96 3.69 -65.78 -0.24 2.72 16 6 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 7 N -0.71 -16.54 5.27 -51.36 -0.27 -16.81 16 8 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 12 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 C 0.06 1.01 4.97 -2.53 -0.01 1.00 16 17 N -0.59 -9.83 3.06 -164.22 -0.50 -10.34 16 18 C 0.57 10.29 6.85 -12.46 -0.09 10.21 16 19 O -0.55 -10.68 13.83 5.29 0.07 -10.61 16 20 C -0.09 -1.52 5.38 -104.65 -0.56 -2.08 16 21 C -0.08 -1.11 7.99 -39.14 -0.31 -1.43 16 22 C -0.11 -1.26 9.92 -40.04 -0.40 -1.66 16 23 C -0.08 -1.02 9.96 -39.37 -0.39 -1.42 16 24 C 0.12 1.96 6.60 -84.88 -0.56 1.40 16 25 N -0.48 -7.36 10.34 -10.99 -0.11 -7.48 16 26 C 0.13 1.72 11.15 -17.47 -0.19 1.53 16 27 C -0.18 -2.40 10.03 -39.74 -0.40 -2.80 16 28 C -0.04 -0.71 9.22 -39.31 -0.36 -1.07 16 29 C -0.07 -1.11 5.76 -106.53 -0.61 -1.72 16 30 H 0.07 1.04 6.75 -51.93 -0.35 0.69 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 35 H 0.39 9.83 7.82 -40.82 -0.32 9.51 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.08 1.54 6.85 -51.93 -0.36 1.18 16 38 H 0.06 0.73 7.35 -51.93 -0.38 0.35 16 39 H 0.14 1.58 6.09 -52.49 -0.32 1.26 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 44 H 0.15 2.60 6.06 -52.49 -0.32 2.28 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -32.30 359.91 -9.92 -42.22 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.80 Total: 11.58 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -4.43 Total: -4.24 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.16 Total: -61.24 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.30 -9.92 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989258462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.287 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds