Wall clock time and date at job start Tue Mar 31 2020 14:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.99867 * 2 1 4 4 C 1.54330 * 109.99453 * 238.96067 * 2 1 3 5 5 C 1.55152 * 103.02492 * 218.66527 * 4 2 1 6 6 H 1.08997 * 111.00446 * 153.37378 * 5 4 2 7 7 N 1.46494 * 111.00481 * 277.23519 * 5 4 2 8 8 C 1.36946 * 119.99987 * 198.64819 * 7 5 4 9 9 H 1.07995 * 119.99715 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99833 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00504 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99823 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47044 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46989 * 119.99938 * 12 10 8 15 15 H 1.48497 * 109.47303 * 240.00022 * 12 10 8 16 16 C 1.54914 * 101.57789 * 35.30628 * 5 4 2 17 17 N 1.47019 * 109.88124 * 121.09207 * 2 1 3 18 18 C 1.34780 * 125.64931 * 298.39519 * 17 2 1 19 19 O 1.21582 * 119.99968 * 4.33102 * 18 17 2 20 20 C 1.47548 * 119.99836 * 184.33448 * 18 17 2 21 21 C 1.38697 * 120.38996 * 317.25872 * 20 18 17 22 22 C 1.38967 * 120.54154 * 180.02562 * 21 20 18 23 23 C 1.36219 * 121.23564 * 0.04909 * 22 21 20 24 24 C 1.40711 * 120.19983 * 0.22813 * 23 22 21 25 25 N 1.33686 * 120.93569 * 180.33842 * 24 23 22 26 26 C 1.31068 * 121.33941 * 179.74631 * 25 24 23 27 27 C 1.39342 * 121.70586 * 359.66503 * 26 25 24 28 28 C 1.36670 * 119.87254 * 0.02562 * 27 26 25 29 29 C 1.40477 * 118.16745 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47287 * 300.35895 * 1 2 3 31 31 H 1.09004 * 109.47340 * 60.35973 * 1 2 3 32 32 H 1.08996 * 109.46979 * 180.36182 * 1 2 3 33 33 H 1.09006 * 110.85456 * 100.19208 * 4 2 1 34 34 H 1.09000 * 110.66559 * 337.04789 * 4 2 1 35 35 H 0.96998 * 120.00357 * 18.64266 * 7 5 4 36 36 H 0.96993 * 120.00381 * 180.02562 * 11 10 8 37 37 H 1.09002 * 110.36448 * 204.15245 * 16 5 4 38 38 H 1.08997 * 110.46132 * 81.88116 * 16 5 4 39 39 H 1.08002 * 119.72892 * 0.02562 * 21 20 18 40 40 H 1.07995 * 119.38695 * 180.02562 * 22 21 20 41 41 H 1.07993 * 119.89647 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.14124 * 179.68378 * 26 25 24 43 43 H 1.07997 * 120.06435 * 180.02562 * 27 26 25 44 44 H 1.07995 * 120.91722 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2426 5 6 3.2864 -1.5183 -0.6914 6 1 3.4807 -2.4156 -1.2790 7 7 4.4699 -0.6561 -0.6463 8 6 5.7189 -1.2115 -0.5631 9 1 5.8313 -2.2851 -0.5305 10 6 6.8403 -0.3946 -0.5209 11 7 6.7032 0.9139 -0.5602 12 14 8.5440 -1.1522 -0.4068 13 1 8.4265 -2.6322 -0.3770 14 1 9.3475 -0.7435 -1.5869 15 1 9.2123 -0.6831 0.8336 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.0773 0.5764 2.7204 20 6 2.4496 -1.1151 3.5599 21 6 2.5065 -2.5003 3.5190 22 6 3.1102 -3.2130 4.5481 23 6 3.6591 -2.5770 5.6204 24 6 3.6195 -1.1732 5.7072 25 7 4.1595 -0.5336 6.7496 26 6 4.1314 0.7739 6.8362 27 6 3.5457 1.5609 5.8467 28 6 2.9812 0.9693 4.7516 29 6 3.0133 -0.4325 4.6648 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5082 -0.8932 32 1 -0.3633 -1.0276 0.0065 33 1 2.3598 -0.0450 -2.0192 34 1 1.3067 -1.4405 -1.6224 35 1 4.3689 0.3081 -0.6753 36 1 7.4869 1.4847 -0.5310 37 1 3.6655 -2.0411 1.3933 38 1 2.1807 -2.7721 0.7135 39 1 2.0782 -3.0295 2.6805 40 1 3.1444 -4.2912 4.4969 41 1 4.1225 -3.1523 6.4081 42 1 4.5740 1.2536 7.6966 43 1 3.5378 2.6364 5.9448 44 1 2.5223 1.5629 3.9749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989258462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:25 Heat of formation + Delta-G solvation = 20.706715 kcal Electronic energy + Delta-G solvation = -27888.626301 eV Core-core repulsion = 24191.294059 eV Total energy + Delta-G solvation = -3697.332242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16261 -40.96445 -38.83656 -37.93023 -35.82468 -34.49958 -33.30458 -32.94765 -31.61411 -30.82463 -30.12486 -26.91481 -25.89488 -25.56083 -24.80118 -24.47876 -22.71498 -21.45088 -20.26337 -19.42153 -19.15520 -18.18629 -17.96599 -17.76256 -17.15993 -16.42384 -16.19019 -15.70141 -15.55460 -15.44013 -15.26287 -15.09731 -14.83339 -14.64707 -14.35971 -14.12040 -13.81339 -13.54203 -13.27559 -13.19783 -13.00505 -12.92895 -12.78347 -12.68962 -12.39163 -12.25197 -12.17824 -12.00657 -11.66048 -11.61187 -11.51253 -11.21200 -11.00541 -10.47679 -9.85292 -9.71183 -9.32648 -8.97577 -7.95090 -5.23260 -0.84727 -0.23031 0.67214 1.45441 1.46483 1.55401 1.56360 1.84059 2.13120 2.54595 3.03946 3.26450 3.31610 3.37957 3.65756 3.74711 3.77089 3.83995 3.88565 3.92326 3.97169 4.08989 4.14784 4.35274 4.37117 4.42328 4.47329 4.68138 4.71892 4.73505 4.75959 4.78444 4.93856 4.97351 5.04098 5.09446 5.18266 5.21305 5.23906 5.28035 5.35031 5.44739 5.52575 5.54941 5.76681 6.26274 6.48813 6.79938 7.03303 7.33003 8.08370 8.29407 9.28601 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.005381 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.838154 B = 5202.464505 C = 6781.863785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.133 3.867 3 H 0.040 0.960 4 C -0.121 4.121 5 C 0.155 3.845 6 H 0.090 0.910 7 N -0.726 5.726 8 C -0.229 4.229 9 H 0.086 0.914 10 C -0.077 4.077 11 N -0.971 5.971 12 Si 0.963 3.037 13 H -0.258 1.258 14 H -0.296 1.296 15 H -0.305 1.305 16 C 0.072 3.928 17 N -0.590 5.590 18 C 0.569 3.431 19 O -0.576 6.576 20 C -0.129 4.129 21 C -0.070 4.070 22 C -0.098 4.098 23 C -0.079 4.079 24 C 0.098 3.902 25 N -0.491 5.491 26 C 0.129 3.871 27 C -0.169 4.169 28 C -0.079 4.079 29 C -0.089 4.089 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.369 0.631 36 H 0.247 0.753 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.161 0.839 42 H 0.200 0.800 43 H 0.166 0.834 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.460 -8.430 8.419 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 H 0.058 0.942 4 C -0.159 4.159 5 C 0.045 3.955 6 H 0.108 0.892 7 N -0.365 5.365 8 C -0.361 4.361 9 H 0.104 0.896 10 C -0.269 4.269 11 N -0.622 5.622 12 Si 0.793 3.207 13 H -0.182 1.182 14 H -0.223 1.223 15 H -0.233 1.233 16 C -0.052 4.052 17 N -0.320 5.320 18 C 0.359 3.641 19 O -0.458 6.458 20 C -0.132 4.132 21 C -0.088 4.088 22 C -0.117 4.117 23 C -0.098 4.098 24 C -0.023 4.023 25 N -0.200 5.200 26 C -0.043 4.043 27 C -0.189 4.189 28 C -0.105 4.105 29 C -0.092 4.092 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.200 0.800 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.175 0.825 40 H 0.197 0.803 41 H 0.178 0.822 42 H 0.217 0.783 43 H 0.184 0.816 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.339 -8.684 9.193 16.985 hybrid contribution 0.823 1.488 -0.619 1.810 sum -10.516 -7.196 8.573 15.358 Atomic orbital electron populations 1.22034 0.93064 1.02963 1.02480 1.21601 0.95316 0.95208 0.84826 0.94161 1.22984 0.97552 1.00081 0.95295 1.21695 0.86145 0.94666 0.92956 0.89182 1.42552 1.01348 1.05076 1.87488 1.19680 0.84361 0.92300 1.39756 0.89586 1.25500 1.01444 0.95727 1.04204 1.69829 1.28996 1.03471 1.59911 0.85212 0.80737 0.78574 0.76148 1.18159 1.22299 1.23264 1.23517 0.94774 0.87794 0.99162 1.48417 1.50783 1.28689 1.04149 1.18035 0.80660 0.83286 0.82155 1.90680 1.39863 1.31279 1.83946 1.19916 1.03021 0.95466 0.94829 1.21865 0.95867 0.91566 0.99548 1.21270 0.95971 1.02552 0.91952 1.21309 0.97982 0.90884 0.99622 1.19190 0.97006 0.95595 0.90477 1.68089 1.17131 1.11766 1.22971 1.23607 0.93390 0.88834 0.98501 1.22299 0.98765 1.03402 0.94405 1.21809 0.95982 0.93967 0.98770 1.18802 1.00195 0.94772 0.95440 0.93795 0.89855 0.90910 0.90479 0.86492 0.79975 0.94431 0.91981 0.87895 0.82484 0.80262 0.82180 0.78344 0.81602 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.10 71.98 0.66 -3.09 16 2 C 0.13 4.13 3.48 45.34 0.16 4.29 16 3 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 4 C -0.12 -3.26 6.05 31.78 0.19 -3.06 16 5 C 0.16 5.14 3.69 46.38 0.17 5.31 16 6 H 0.09 2.71 8.13 -2.39 -0.02 2.69 16 7 N -0.73 -33.80 5.27 -316.39 -1.67 -35.47 16 8 C -0.23 -11.86 9.98 84.03 0.84 -11.02 16 9 H 0.09 4.15 7.83 -2.91 -0.02 4.12 16 10 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 11 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 12 Si 0.96 45.38 29.55 68.60 2.03 47.41 16 13 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 15 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 16 C 0.07 2.16 4.97 86.86 0.43 2.59 16 17 N -0.59 -19.60 3.06 -791.74 -2.43 -22.03 16 18 C 0.57 21.03 6.85 86.70 0.59 21.63 16 19 O -0.58 -23.99 13.83 -3.97 -0.05 -24.05 16 20 C -0.13 -4.34 5.38 -19.89 -0.11 -4.45 16 21 C -0.07 -1.78 7.99 22.55 0.18 -1.60 16 22 C -0.10 -2.05 9.92 21.97 0.22 -1.83 16 23 C -0.08 -1.96 9.96 22.40 0.22 -1.74 16 24 C 0.10 3.11 6.60 40.27 0.27 3.37 16 25 N -0.49 -14.77 10.34 -188.68 -1.95 -16.72 16 26 C 0.13 3.26 11.15 85.07 0.95 4.21 16 27 C -0.17 -4.62 10.03 22.17 0.22 -4.40 16 28 C -0.08 -2.78 9.22 22.45 0.21 -2.57 16 29 C -0.09 -3.16 5.76 -21.10 -0.12 -3.28 16 30 H 0.04 1.34 6.75 -2.39 -0.02 1.33 16 31 H 0.08 1.74 8.14 -2.38 -0.02 1.73 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.12 2.24 7.85 -2.39 -0.02 2.22 16 35 H 0.37 19.45 7.82 -92.71 -0.72 18.72 16 36 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.06 2.16 6.85 -2.39 -0.02 2.15 16 38 H 0.10 2.16 7.35 -2.39 -0.02 2.14 16 39 H 0.16 3.13 6.09 -2.91 -0.02 3.11 16 40 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 43 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.13 4.90 6.06 -2.91 -0.02 4.88 16 Total: -1.00 -75.17 359.91 2.06 -73.10 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.31 Total: 36.26 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.54 Total: 0.52 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -5.76 Total: -133.24 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.17 2.06 -73.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989258462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.809 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds