Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87181 * 2 1 4 4 C 1.54320 * 109.88174 * 238.98127 * 2 1 3 5 5 C 1.55161 * 102.93850 * 218.38929 * 4 2 1 6 6 H 1.09000 * 111.00421 * 277.38746 * 5 4 2 7 7 N 1.46500 * 111.00221 * 153.57652 * 5 4 2 8 8 C 1.36935 * 120.00388 * 154.99556 * 7 5 4 9 9 H 1.08005 * 119.99791 * 0.02562 * 8 7 5 10 10 C 1.38804 * 120.00352 * 179.72156 * 8 7 5 11 11 N 1.31619 * 120.00033 * 0.28367 * 10 8 7 12 12 Si 1.86806 * 119.99920 * 180.27801 * 10 8 7 13 13 H 1.48497 * 109.47088 * 60.00648 * 12 10 8 14 14 H 1.48503 * 109.46979 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47009 * 300.00351 * 12 10 8 16 16 C 1.54905 * 101.58345 * 35.50217 * 5 4 2 17 17 N 1.47024 * 109.88366 * 121.16997 * 2 1 3 18 18 C 1.34780 * 125.64900 * 298.38209 * 17 2 1 19 19 O 1.21562 * 120.00156 * 354.11749 * 18 17 2 20 20 C 1.47757 * 119.99746 * 174.11388 * 18 17 2 21 21 C 1.40603 * 120.26692 * 155.72427 * 20 18 17 22 22 N 1.30797 * 121.53722 * 180.02562 * 21 20 18 23 23 C 1.33815 * 121.72535 * 359.97437 * 22 21 20 24 24 C 1.40527 * 120.82534 * 179.97438 * 23 22 21 25 25 C 1.36128 * 119.81696 * 180.08938 * 24 23 22 26 26 C 1.39346 * 121.09039 * 359.91397 * 25 24 23 27 27 C 1.36144 * 120.82875 * 0.06440 * 26 25 24 28 28 C 1.40537 * 119.62332 * 359.97438 * 27 26 25 29 29 C 1.39011 * 120.27376 * 335.44850 * 20 18 17 30 30 H 1.09000 * 109.47112 * 181.02058 * 1 2 3 31 31 H 1.09007 * 109.47200 * 301.01904 * 1 2 3 32 32 H 1.08995 * 109.47065 * 61.01692 * 1 2 3 33 33 H 1.09001 * 110.72151 * 100.02687 * 4 2 1 34 34 H 1.08997 * 110.87340 * 336.82140 * 4 2 1 35 35 H 0.97004 * 120.00356 * 335.00127 * 7 5 4 36 36 H 0.97001 * 119.99686 * 179.97438 * 11 10 8 37 37 H 1.09006 * 110.36725 * 81.82599 * 16 5 4 38 38 H 1.09003 * 110.37013 * 204.14890 * 16 5 4 39 39 H 1.08005 * 119.23245 * 359.97438 * 21 20 18 40 40 H 1.07998 * 120.08860 * 359.97438 * 24 23 22 41 41 H 1.07998 * 119.45384 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.58420 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.18572 * 180.02562 * 27 26 25 44 44 H 1.08004 * 121.01395 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6943 6 1 4.1655 -0.8681 -0.6621 7 7 3.5531 -2.7175 -1.4851 8 6 4.8164 -3.2444 -1.5271 9 1 5.6169 -2.7724 -0.9768 10 6 5.0668 -4.3888 -2.2718 11 7 4.0912 -4.9643 -2.9421 12 14 6.7884 -5.1119 -2.3227 13 1 7.2120 -5.4790 -0.9476 14 1 6.7914 -6.3230 -3.1819 15 1 7.7306 -4.1081 -2.8795 16 6 2.8145 -1.8803 0.7343 17 7 2.0300 -0.7156 1.1830 18 6 1.8076 -0.3651 2.4653 19 8 1.2343 0.6761 2.7201 20 6 2.2606 -1.2465 3.5612 21 6 2.5093 -0.7170 4.8398 22 7 2.9114 -1.4742 5.8275 23 6 3.1057 -2.7891 5.6722 24 6 3.5386 -3.5848 6.7465 25 6 3.7314 -4.9201 6.5651 26 6 3.5048 -5.5182 5.3271 27 6 3.0846 -4.7810 4.2625 28 6 2.8760 -3.3994 4.4133 29 6 2.4387 -2.6070 3.3382 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3634 0.5296 0.8808 32 1 -0.3633 0.4979 -0.8989 33 1 2.3529 -0.0433 -2.0201 34 1 1.3064 -1.4436 -1.6230 35 1 2.8342 -3.1417 -1.9792 36 1 4.2663 -5.7638 -3.4627 37 1 2.1885 -2.7724 0.7092 38 1 3.6716 -2.0356 1.3897 39 1 2.3659 0.3399 5.0100 40 1 3.7196 -3.1379 7.7129 41 1 4.0646 -5.5261 7.3947 42 1 3.6651 -6.5799 5.2105 43 1 2.9118 -5.2553 3.3078 44 1 2.2511 -3.0410 2.3672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989485925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = 42.311947 kcal Electronic energy + Delta-G solvation = -27187.342160 eV Core-core repulsion = 23490.946791 eV Total energy + Delta-G solvation = -3696.395369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.11969 -39.84776 -37.67446 -36.83214 -34.33152 -33.89979 -31.81358 -31.48262 -30.61431 -29.92848 -28.51350 -25.84695 -24.80713 -24.25272 -23.80207 -22.34688 -21.80371 -20.41465 -19.42839 -18.33981 -17.51323 -17.28118 -16.89474 -16.31119 -15.86007 -15.28587 -14.77073 -14.60563 -14.47815 -14.14408 -13.97713 -13.80303 -13.59612 -13.48530 -13.11657 -13.08497 -12.75374 -12.33654 -12.21442 -11.91484 -11.87041 -11.75061 -11.62299 -11.22579 -11.09988 -10.89473 -10.74786 -10.52962 -10.39805 -10.15886 -10.06499 -9.85169 -9.51801 -9.10320 -8.94465 -8.48472 -8.40095 -7.19736 -5.94386 -3.25924 0.12528 0.53870 1.75625 2.49822 3.00735 3.18860 3.33642 3.39513 3.39632 3.99060 4.11269 4.37793 4.43461 4.48908 4.66290 4.70025 4.78133 4.97153 5.02089 5.04182 5.12331 5.17231 5.34133 5.41006 5.46253 5.55966 5.58987 5.67916 5.69888 5.74853 5.79285 5.89356 5.97012 6.02932 6.08442 6.14577 6.23930 6.26769 6.33981 6.34338 6.38839 6.54488 6.66626 6.71476 7.54404 7.62210 7.76630 8.19893 8.23561 9.35196 9.87233 10.22432 11.27170 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.004664 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.977197 B = 6001.786085 C = 8657.313719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.172 3.828 6 H 0.070 0.930 7 N -0.710 5.710 8 C -0.253 4.253 9 H 0.072 0.928 10 C -0.005 4.005 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.065 3.935 17 N -0.602 5.602 18 C 0.577 3.423 19 O -0.543 6.543 20 C -0.186 4.186 21 C 0.183 3.817 22 N -0.482 5.482 23 C 0.140 3.860 24 C -0.103 4.103 25 C -0.091 4.091 26 C -0.124 4.124 27 C -0.080 4.080 28 C -0.112 4.112 29 C -0.018 4.018 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.169 0.831 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 2.748 13.763 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.088 0.912 7 N -0.349 5.349 8 C -0.383 4.383 9 H 0.090 0.910 10 C -0.202 4.202 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.060 4.060 17 N -0.335 5.335 18 C 0.366 3.634 19 O -0.422 6.422 20 C -0.191 4.191 21 C 0.009 3.991 22 N -0.189 5.189 23 C 0.019 3.981 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.142 4.142 27 C -0.099 4.099 28 C -0.114 4.114 29 C -0.044 4.044 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.186 0.814 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.444 3.509 14.806 15.852 hybrid contribution 0.587 -1.116 -1.048 1.639 sum -3.857 2.393 13.759 14.488 Atomic orbital electron populations 1.22129 0.95006 1.02244 1.02498 1.21545 0.94246 0.96310 0.84325 0.90645 1.23060 0.99136 0.99736 0.95739 1.21311 0.94879 0.89592 0.88253 0.91226 1.42312 1.09646 1.27814 1.55171 1.19201 0.86832 1.06896 1.25410 0.91010 1.24750 0.97610 0.98170 0.99620 1.69644 1.30929 1.22224 1.34735 0.86285 0.83956 0.78524 0.77511 1.21108 1.21562 1.21066 1.23804 0.94329 0.87561 1.00336 1.48508 1.51595 1.29019 1.04402 1.17650 0.79399 0.85073 0.81297 1.90749 1.43514 1.24516 1.83402 1.20924 1.07037 0.94667 0.96486 1.22996 0.89534 1.00232 0.86341 1.68032 1.13719 1.04635 1.32548 1.19043 0.96412 0.90196 0.92417 1.20789 1.00005 0.93239 0.98160 1.20980 0.97828 0.94656 0.97620 1.20958 0.99829 1.00594 0.92833 1.21181 0.96977 0.91935 0.99805 1.18840 1.02965 0.95271 0.94316 1.22710 0.89764 0.92670 0.99286 0.92494 0.91744 0.91622 0.90130 0.90281 0.77787 0.93200 0.91021 0.90924 0.81437 0.84679 0.85224 0.85216 0.84517 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.10 37.16 0.34 -1.73 16 2 C 0.14 1.95 3.43 -66.95 -0.23 1.72 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.01 6.12 -24.90 -0.15 -2.16 16 5 C 0.17 3.03 3.71 -65.78 -0.24 2.78 16 6 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 7 N -0.71 -15.79 5.24 -51.35 -0.27 -16.06 16 8 C -0.25 -6.38 9.96 -15.06 -0.15 -6.53 16 9 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 10 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 11 N -0.93 -26.00 13.06 55.49 0.72 -25.28 16 12 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.07 1.03 4.69 -2.53 -0.01 1.02 16 17 N -0.60 -9.07 3.06 -164.16 -0.50 -9.58 16 18 C 0.58 9.14 7.40 -12.37 -0.09 9.05 16 19 O -0.54 -9.67 15.87 5.31 0.08 -9.59 16 20 C -0.19 -2.71 5.68 -104.83 -0.60 -3.30 16 21 C 0.18 2.57 10.73 -17.10 -0.18 2.39 16 22 N -0.48 -6.95 10.30 -10.67 -0.11 -7.06 16 23 C 0.14 1.92 6.61 -84.79 -0.56 1.36 16 24 C -0.10 -1.15 9.97 -39.48 -0.39 -1.55 16 25 C -0.09 -0.85 9.94 -39.93 -0.40 -1.24 16 26 C -0.12 -1.22 9.96 -39.92 -0.40 -1.62 16 27 C -0.08 -0.93 9.77 -39.47 -0.39 -1.32 16 28 C -0.11 -1.50 5.74 -106.82 -0.61 -2.12 16 29 C -0.02 -0.25 7.94 -38.43 -0.31 -0.56 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.91 7.10 -51.93 -0.37 0.54 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.16 7.72 -51.93 -0.40 0.76 16 35 H 0.39 9.19 7.76 -40.82 -0.32 8.87 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.07 1.14 6.84 -51.93 -0.36 0.78 16 38 H 0.07 1.17 6.85 -51.93 -0.36 0.81 16 39 H 0.17 2.13 7.82 -52.48 -0.41 1.72 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 43 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.16 2.11 4.68 -52.48 -0.25 1.86 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -29.85 362.46 -9.90 -39.75 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.80 Total: 10.40 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -4.47 Total: -4.02 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.16 Total: -57.98 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.85 -9.90 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989485925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.064 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds