Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87181 * 2 1 4 4 C 1.54320 * 109.88174 * 238.98127 * 2 1 3 5 5 C 1.55161 * 102.93850 * 218.38929 * 4 2 1 6 6 H 1.09000 * 111.00421 * 277.38746 * 5 4 2 7 7 N 1.46500 * 111.00221 * 153.57652 * 5 4 2 8 8 C 1.36935 * 120.00388 * 154.99556 * 7 5 4 9 9 H 1.08005 * 119.99791 * 0.02562 * 8 7 5 10 10 C 1.38804 * 120.00352 * 179.72156 * 8 7 5 11 11 N 1.31619 * 120.00033 * 0.28367 * 10 8 7 12 12 Si 1.86806 * 119.99920 * 180.27801 * 10 8 7 13 13 H 1.48497 * 109.47088 * 60.00648 * 12 10 8 14 14 H 1.48503 * 109.46979 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47009 * 300.00351 * 12 10 8 16 16 C 1.54905 * 101.58345 * 35.50217 * 5 4 2 17 17 N 1.47024 * 109.88366 * 121.16997 * 2 1 3 18 18 C 1.34780 * 125.64900 * 298.38209 * 17 2 1 19 19 O 1.21562 * 120.00156 * 354.11749 * 18 17 2 20 20 C 1.47757 * 119.99746 * 174.11388 * 18 17 2 21 21 C 1.40603 * 120.26692 * 155.72427 * 20 18 17 22 22 N 1.30797 * 121.53722 * 180.02562 * 21 20 18 23 23 C 1.33815 * 121.72535 * 359.97437 * 22 21 20 24 24 C 1.40527 * 120.82534 * 179.97438 * 23 22 21 25 25 C 1.36128 * 119.81696 * 180.08938 * 24 23 22 26 26 C 1.39346 * 121.09039 * 359.91397 * 25 24 23 27 27 C 1.36144 * 120.82875 * 0.06440 * 26 25 24 28 28 C 1.40537 * 119.62332 * 359.97438 * 27 26 25 29 29 C 1.39011 * 120.27376 * 335.44850 * 20 18 17 30 30 H 1.09000 * 109.47112 * 181.02058 * 1 2 3 31 31 H 1.09007 * 109.47200 * 301.01904 * 1 2 3 32 32 H 1.08995 * 109.47065 * 61.01692 * 1 2 3 33 33 H 1.09001 * 110.72151 * 100.02687 * 4 2 1 34 34 H 1.08997 * 110.87340 * 336.82140 * 4 2 1 35 35 H 0.97004 * 120.00356 * 335.00127 * 7 5 4 36 36 H 0.97001 * 119.99686 * 179.97438 * 11 10 8 37 37 H 1.09006 * 110.36725 * 81.82599 * 16 5 4 38 38 H 1.09003 * 110.37013 * 204.14890 * 16 5 4 39 39 H 1.08005 * 119.23245 * 359.97438 * 21 20 18 40 40 H 1.07998 * 120.08860 * 359.97438 * 24 23 22 41 41 H 1.07998 * 119.45384 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.58420 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.18572 * 180.02562 * 27 26 25 44 44 H 1.08004 * 121.01395 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6943 6 1 4.1655 -0.8681 -0.6621 7 7 3.5531 -2.7175 -1.4851 8 6 4.8164 -3.2444 -1.5271 9 1 5.6169 -2.7724 -0.9768 10 6 5.0668 -4.3888 -2.2718 11 7 4.0912 -4.9643 -2.9421 12 14 6.7884 -5.1119 -2.3227 13 1 7.2120 -5.4790 -0.9476 14 1 6.7914 -6.3230 -3.1819 15 1 7.7306 -4.1081 -2.8795 16 6 2.8145 -1.8803 0.7343 17 7 2.0300 -0.7156 1.1830 18 6 1.8076 -0.3651 2.4653 19 8 1.2343 0.6761 2.7201 20 6 2.2606 -1.2465 3.5612 21 6 2.5093 -0.7170 4.8398 22 7 2.9114 -1.4742 5.8275 23 6 3.1057 -2.7891 5.6722 24 6 3.5386 -3.5848 6.7465 25 6 3.7314 -4.9201 6.5651 26 6 3.5048 -5.5182 5.3271 27 6 3.0846 -4.7810 4.2625 28 6 2.8760 -3.3994 4.4133 29 6 2.4387 -2.6070 3.3382 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3634 0.5296 0.8808 32 1 -0.3633 0.4979 -0.8989 33 1 2.3529 -0.0433 -2.0201 34 1 1.3064 -1.4436 -1.6230 35 1 2.8342 -3.1417 -1.9792 36 1 4.2663 -5.7638 -3.4627 37 1 2.1885 -2.7724 0.7092 38 1 3.6716 -2.0356 1.3897 39 1 2.3659 0.3399 5.0100 40 1 3.7196 -3.1379 7.7129 41 1 4.0646 -5.5261 7.3947 42 1 3.6651 -6.5799 5.2105 43 1 2.9118 -5.2553 3.3078 44 1 2.2511 -3.0410 2.3672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989485925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = 25.446673 kcal Electronic energy + Delta-G solvation = -27188.073493 eV Core-core repulsion = 23490.946791 eV Total energy + Delta-G solvation = -3697.126702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17485 -41.01678 -38.92690 -37.85021 -36.02391 -34.96256 -33.28642 -32.83974 -31.58372 -30.89921 -30.09206 -27.04421 -26.08433 -25.48097 -25.17856 -23.34950 -22.96070 -21.80510 -20.57897 -19.42420 -19.21947 -18.32756 -18.02670 -17.57998 -17.09534 -16.52204 -16.18090 -15.70757 -15.56106 -15.41605 -15.20503 -15.13177 -14.83056 -14.66021 -14.29349 -14.26424 -14.20603 -13.57291 -13.43178 -13.05961 -12.86262 -12.82692 -12.78936 -12.73355 -12.47313 -12.35081 -12.15540 -12.05529 -11.79965 -11.56699 -11.51743 -11.28416 -10.97117 -10.59122 -9.94566 -9.71525 -9.33584 -9.04869 -7.94474 -5.24274 -0.86022 -0.44052 0.80168 1.44613 1.51097 1.51934 1.57866 1.79202 2.11251 2.56642 3.01113 3.09274 3.30698 3.35703 3.48248 3.61789 3.67512 3.79493 3.81161 3.94919 3.98626 4.15137 4.18313 4.24801 4.29405 4.43064 4.44259 4.49667 4.63910 4.65896 4.70376 4.72921 4.82829 4.94087 5.02970 5.03451 5.11350 5.21215 5.31310 5.34313 5.37236 5.41922 5.44327 5.54482 5.81970 6.26196 6.36592 6.72260 6.95857 7.35098 8.04723 8.30119 9.27642 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.004664 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.977197 B = 6001.786085 C = 8657.313719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.138 3.862 3 H 0.079 0.921 4 C -0.124 4.124 5 C 0.165 3.835 6 H 0.064 0.936 7 N -0.719 5.719 8 C -0.246 4.246 9 H 0.075 0.925 10 C -0.061 4.061 11 N -0.962 5.962 12 Si 0.963 3.037 13 H -0.278 1.278 14 H -0.297 1.297 15 H -0.281 1.281 16 C 0.082 3.918 17 N -0.601 5.601 18 C 0.579 3.421 19 O -0.566 6.566 20 C -0.201 4.201 21 C 0.174 3.826 22 N -0.493 5.493 23 C 0.119 3.881 24 C -0.117 4.117 25 C -0.076 4.076 26 C -0.115 4.115 27 C -0.098 4.098 28 C -0.127 4.127 29 C -0.017 4.017 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.379 0.621 36 H 0.252 0.748 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.175 0.825 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.143 0.857 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 1.923 15.025 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.098 0.902 4 C -0.163 4.163 5 C 0.054 3.946 6 H 0.082 0.918 7 N -0.358 5.358 8 C -0.377 4.377 9 H 0.093 0.907 10 C -0.254 4.254 11 N -0.612 5.612 12 Si 0.793 3.207 13 H -0.204 1.204 14 H -0.223 1.223 15 H -0.208 1.208 16 C -0.044 4.044 17 N -0.333 5.333 18 C 0.369 3.631 19 O -0.446 6.446 20 C -0.206 4.206 21 C 0.000 4.000 22 N -0.200 5.200 23 C -0.002 4.002 24 C -0.135 4.135 25 C -0.095 4.095 26 C -0.133 4.133 27 C -0.117 4.117 28 C -0.129 4.129 29 C -0.043 4.043 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.212 0.788 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.192 0.808 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.177 0.823 43 H 0.161 0.839 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.869 2.722 16.098 16.778 hybrid contribution 0.419 -0.889 -1.329 1.653 sum -3.450 1.833 14.769 15.277 Atomic orbital electron populations 1.22063 0.93835 1.02219 1.02975 1.21645 0.95156 0.96227 0.83483 0.90249 1.22957 0.97556 0.99572 0.96201 1.21447 0.96102 0.88221 0.88810 0.91769 1.42376 1.08480 1.29022 1.55892 1.19524 0.87998 1.06314 1.23883 0.90676 1.25405 1.00562 0.99118 1.00327 1.69777 1.32518 1.22690 1.36211 0.85378 0.80483 0.77436 0.77443 1.20398 1.22339 1.20771 1.23456 0.94293 0.87765 0.98872 1.48497 1.51377 1.28766 1.04659 1.17807 0.78899 0.84859 0.81559 1.90729 1.44656 1.25563 1.83693 1.20834 1.08540 0.94871 0.96348 1.23088 0.89955 1.00641 0.86294 1.68041 1.14069 1.05297 1.32626 1.19469 0.97011 0.90232 0.93441 1.21071 1.00317 0.94018 0.98106 1.21432 0.95499 0.94132 0.98478 1.21392 0.97642 1.01958 0.92283 1.21374 0.97971 0.91324 1.01021 1.19023 1.03454 0.96237 0.94161 1.22734 0.89517 0.92471 0.99560 0.92675 0.93057 0.89381 0.88818 0.90140 0.78776 0.93922 0.91000 0.91285 0.80838 0.83312 0.81443 0.82255 0.83945 0.82264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.10 71.98 0.66 -3.10 16 2 C 0.14 3.72 3.43 45.34 0.16 3.87 16 3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.12 -3.48 6.12 31.78 0.19 -3.28 16 5 C 0.17 5.71 3.71 46.38 0.17 5.89 16 6 H 0.06 2.30 8.09 -2.39 -0.02 2.29 16 7 N -0.72 -31.86 5.24 -316.38 -1.66 -33.52 16 8 C -0.25 -12.33 9.96 84.03 0.84 -11.49 16 9 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 10 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 11 N -0.96 -54.38 13.06 21.65 0.28 -54.09 16 12 Si 0.96 43.02 29.55 68.60 2.03 45.04 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 C 0.08 2.55 4.69 86.85 0.41 2.96 16 17 N -0.60 -17.92 3.06 -791.54 -2.43 -20.35 16 18 C 0.58 18.47 7.40 86.76 0.64 19.11 16 19 O -0.57 -20.33 15.87 -3.91 -0.06 -20.40 16 20 C -0.20 -5.94 5.68 -20.00 -0.11 -6.06 16 21 C 0.17 5.00 10.73 85.42 0.92 5.92 16 22 N -0.49 -14.25 10.30 -187.67 -1.93 -16.18 16 23 C 0.12 3.19 6.61 40.27 0.27 3.45 16 24 C -0.12 -2.37 9.97 22.34 0.22 -2.14 16 25 C -0.08 -1.15 9.94 22.05 0.22 -0.93 16 26 C -0.12 -1.90 9.96 22.05 0.22 -1.68 16 27 C -0.10 -2.13 9.77 22.34 0.22 -1.91 16 28 C -0.13 -3.35 5.74 -21.29 -0.12 -3.47 16 29 C -0.02 -0.47 7.94 23.01 0.18 -0.29 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.41 7.10 -2.38 -0.02 1.39 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.27 7.72 -2.39 -0.02 2.25 16 35 H 0.38 18.05 7.76 -92.71 -0.72 17.33 16 36 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 37 H 0.07 2.27 6.84 -2.38 -0.02 2.26 16 38 H 0.07 2.21 6.85 -2.39 -0.02 2.20 16 39 H 0.17 4.56 7.82 -2.91 -0.02 4.53 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 44 H 0.16 4.27 4.68 -2.91 -0.01 4.25 16 Total: -1.00 -63.96 362.46 2.08 -61.88 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.31 Total: 33.49 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.54 Total: 4.12 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -5.74 Total: -124.14 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.06 Total: -20.40 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -63.96 2.08 -61.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989485925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.329 kcal (2) G-P(sol) polarization free energy of solvation -63.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds