Wall clock time and date at job start Tue Mar 31 2020 14:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.87773 * 2 1 4 4 C 1.54324 * 109.87986 * 238.98504 * 2 1 3 5 5 C 1.55156 * 102.94340 * 218.39218 * 4 2 1 6 6 H 1.09001 * 111.00232 * 153.61203 * 5 4 2 7 7 N 1.46498 * 111.00441 * 277.42813 * 5 4 2 8 8 C 1.36936 * 119.99978 * 205.00018 * 7 5 4 9 9 H 1.07998 * 119.99752 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99596 * 180.02562 * 8 7 5 11 11 N 1.31625 * 119.99764 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 120.00491 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47390 * 270.00301 * 12 10 8 14 14 H 1.48495 * 109.47101 * 29.99850 * 12 10 8 15 15 H 1.48497 * 109.47354 * 150.00231 * 12 10 8 16 16 C 1.54908 * 101.58147 * 35.50236 * 5 4 2 17 17 N 1.47025 * 109.88144 * 121.18209 * 2 1 3 18 18 C 1.34772 * 125.64424 * 298.30881 * 17 2 1 19 19 O 1.21574 * 119.99787 * 181.68844 * 18 17 2 20 20 C 1.47757 * 120.00347 * 1.68447 * 18 17 2 21 21 C 1.40603 * 120.26631 * 351.07861 * 20 18 17 22 22 N 1.30798 * 121.53493 * 179.71055 * 21 20 18 23 23 C 1.33822 * 121.71904 * 0.54863 * 22 21 20 24 24 C 1.40525 * 120.81238 * 179.70375 * 23 22 21 25 25 C 1.36128 * 119.81663 * 180.02562 * 24 23 22 26 26 C 1.39338 * 121.08691 * 359.97438 * 25 24 23 27 27 C 1.36144 * 120.83628 * 0.02562 * 26 25 24 28 28 C 1.40541 * 119.61714 * 359.97438 * 27 26 25 29 29 C 1.39012 * 120.27107 * 171.35592 * 20 18 17 30 30 H 1.08990 * 109.47194 * 168.41752 * 1 2 3 31 31 H 1.09004 * 109.46827 * 288.41890 * 1 2 3 32 32 H 1.09004 * 109.46540 * 48.41423 * 1 2 3 33 33 H 1.08998 * 110.71980 * 100.03031 * 4 2 1 34 34 H 1.09002 * 110.87366 * 336.82493 * 4 2 1 35 35 H 0.97003 * 119.99934 * 24.99723 * 7 5 4 36 36 H 0.96995 * 120.00266 * 179.97438 * 11 10 8 37 37 H 1.08998 * 110.36545 * 81.82889 * 16 5 4 38 38 H 1.09000 * 110.36959 * 204.15029 * 16 5 4 39 39 H 1.07999 * 119.22657 * 359.97438 * 21 20 18 40 40 H 1.07997 * 120.08864 * 0.06884 * 24 23 22 41 41 H 1.08003 * 119.45905 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.58138 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.19221 * 179.97438 * 27 26 25 44 44 H 1.08007 * 121.01501 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2876 -1.5134 -0.6946 6 1 3.4854 -2.4090 -1.2835 7 7 4.4674 -0.6461 -0.6504 8 6 5.7217 -1.1933 -0.7005 9 1 5.8411 -2.2642 -0.7722 10 6 6.8396 -0.3715 -0.6581 11 7 8.0452 -0.8974 -0.7068 12 14 6.6330 1.4808 -0.5333 13 1 6.5633 2.0642 -1.8971 14 1 5.3808 1.7908 0.2022 15 1 7.7907 2.0601 0.1943 16 6 2.8145 -1.8806 0.7340 17 7 2.0301 -0.7159 1.1829 18 6 1.8087 -0.3648 2.4651 19 8 2.2989 -1.0162 3.3669 20 6 0.9704 0.8118 2.7748 21 6 0.5556 1.6768 1.7469 22 7 -0.1912 2.7222 1.9922 23 6 -0.5890 3.0272 3.2330 24 6 -1.3862 4.1587 3.4756 25 6 -1.7789 4.4502 4.7460 26 6 -1.4038 3.6431 5.8181 27 6 -0.6320 2.5385 5.6235 28 6 -0.2084 2.2072 4.3251 29 6 0.5901 1.0758 4.0856 30 1 -0.3633 -1.0066 -0.2063 31 1 -0.3633 0.3247 0.9751 32 1 -0.3632 0.6822 -0.7687 33 1 2.3530 -0.0432 -2.0201 34 1 1.3064 -1.4435 -1.6232 35 1 4.3601 0.3158 -0.5856 36 1 8.8264 -0.3231 -0.6775 37 1 2.1886 -2.7725 0.7088 38 1 3.6716 -2.0360 1.3893 39 1 0.8574 1.4709 0.7305 40 1 -1.6872 4.7948 2.6564 41 1 -2.3919 5.3210 4.9259 42 1 -1.7294 3.8970 6.8161 43 1 -0.3471 1.9205 6.4620 44 1 0.8978 0.4304 4.8951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989485927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:27 Heat of formation + Delta-G solvation = 85.221628 kcal Electronic energy + Delta-G solvation = -27459.991279 eV Core-core repulsion = 23765.456614 eV Total energy + Delta-G solvation = -3694.534665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46478 -39.99515 -37.71540 -37.23989 -34.55818 -33.62164 -32.26326 -31.52954 -30.71705 -30.23956 -28.98285 -26.09317 -24.94462 -24.07762 -23.32944 -22.37037 -22.31362 -20.29295 -19.58894 -18.71441 -17.88561 -17.77682 -16.71098 -16.16812 -15.88262 -15.24113 -15.02265 -14.83803 -14.59152 -14.33090 -14.21777 -13.96843 -13.54744 -13.45767 -13.22911 -12.96010 -12.70753 -12.38960 -12.31888 -12.13155 -12.00649 -11.75143 -11.71545 -11.24928 -11.14444 -10.87702 -10.76938 -10.71725 -10.50303 -10.16626 -10.09995 -9.65537 -9.50604 -9.10377 -8.93338 -8.58114 -8.41121 -7.37054 -5.83674 -3.21032 0.02249 0.41646 1.64417 2.40610 3.05035 3.19673 3.33540 3.35949 3.42330 3.87017 4.00622 4.29214 4.35164 4.50302 4.52482 4.53308 4.63597 4.70043 4.79777 4.82411 4.89149 5.03835 5.15775 5.20381 5.25917 5.41275 5.47598 5.52517 5.57005 5.65182 5.69163 5.71949 5.82205 5.92019 6.02310 6.05618 6.06846 6.10764 6.17880 6.22821 6.35274 6.51212 6.54356 6.64888 7.64634 7.66894 7.90076 8.25721 8.34893 9.11274 9.83752 10.01205 11.34100 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.003503 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.853408 B = 7992.036853 C = 8410.163578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.110 3.890 3 H 0.086 0.914 4 C -0.138 4.138 5 C 0.174 3.826 6 H 0.087 0.913 7 N -0.735 5.735 8 C -0.251 4.251 9 H 0.094 0.906 10 C 0.010 3.990 11 N -0.929 5.929 12 Si 0.882 3.118 13 H -0.282 1.282 14 H -0.278 1.278 15 H -0.290 1.290 16 C 0.078 3.922 17 N -0.594 5.594 18 C 0.575 3.425 19 O -0.536 6.536 20 C -0.191 4.191 21 C 0.130 3.870 22 N -0.485 5.485 23 C 0.141 3.859 24 C -0.100 4.100 25 C -0.093 4.093 26 C -0.126 4.126 27 C -0.083 4.083 28 C -0.119 4.119 29 C 0.009 3.991 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.362 0.638 36 H 0.261 0.739 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.202 0.798 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.362 7.580 7.076 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.007 3.993 3 H 0.103 0.897 4 C -0.177 4.177 5 C 0.062 3.938 6 H 0.105 0.895 7 N -0.376 5.376 8 C -0.380 4.380 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.576 5.576 12 Si 0.712 3.288 13 H -0.209 1.209 14 H -0.205 1.205 15 H -0.216 1.216 16 C -0.046 4.046 17 N -0.326 5.326 18 C 0.364 3.636 19 O -0.414 6.414 20 C -0.196 4.196 21 C -0.041 4.041 22 N -0.193 5.193 23 C 0.021 3.979 24 C -0.119 4.119 25 C -0.113 4.113 26 C -0.144 4.144 27 C -0.102 4.102 28 C -0.121 4.121 29 C -0.017 4.017 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.195 0.805 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.217 0.783 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.183 7.709 6.980 25.409 hybrid contribution 0.268 0.899 0.951 1.336 sum -22.915 8.608 7.931 25.731 Atomic orbital electron populations 1.22942 0.94772 1.03586 1.02964 1.21994 0.93836 0.96592 0.86876 0.89706 1.23132 0.98776 1.00244 0.95585 1.21341 0.85949 0.94522 0.92017 0.89494 1.42685 1.01912 1.04195 1.88853 1.19060 0.81190 0.94199 1.43556 0.88870 1.24663 0.95099 0.97343 1.01525 1.69692 0.96929 1.34252 1.56703 0.86601 0.77111 0.87312 0.77800 1.20871 1.20456 1.21637 1.23358 0.95044 0.86354 0.99883 1.48304 1.51522 1.28856 1.03928 1.17540 0.80588 0.83724 0.81778 1.90782 1.51249 1.54484 1.44933 1.21021 1.03876 0.99331 0.95363 1.25100 0.89864 0.87399 1.01743 1.68148 1.12787 1.17394 1.20974 1.19112 0.95650 0.94652 0.88529 1.20826 0.97490 0.95910 0.97663 1.20970 0.98692 0.99337 0.92332 1.20917 0.98804 0.95267 0.99435 1.21073 0.96664 0.97201 0.95248 1.18819 1.01111 0.96937 0.95208 1.21958 0.89967 0.93442 0.96380 0.91246 0.91155 0.90381 0.89361 0.89770 0.80542 0.92920 0.92092 0.89352 0.78280 0.84564 0.85212 0.85371 0.84955 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 7.81 37.16 0.29 -1.58 16 2 C 0.11 1.41 2.72 -66.95 -0.18 1.23 16 3 H 0.09 1.10 6.25 -51.93 -0.32 0.78 16 4 C -0.14 -1.74 6.07 -24.90 -0.15 -1.89 16 5 C 0.17 2.95 3.72 -65.78 -0.24 2.70 16 6 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 7 N -0.74 -16.27 5.04 -51.35 -0.26 -16.52 16 8 C -0.25 -6.78 10.44 -15.06 -0.16 -6.93 16 9 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 12 Si 0.88 21.97 27.74 -169.99 -4.71 17.26 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 C 0.08 1.34 6.61 -2.53 -0.02 1.32 16 17 N -0.59 -9.53 3.06 -166.36 -0.51 -10.04 16 18 C 0.58 10.04 7.65 -12.37 -0.09 9.94 16 19 O -0.54 -11.06 16.66 5.30 0.09 -10.97 16 20 C -0.19 -2.84 5.33 -104.83 -0.56 -3.40 16 21 C 0.13 1.77 7.35 -17.10 -0.13 1.65 16 22 N -0.49 -6.66 10.30 -10.73 -0.11 -6.77 16 23 C 0.14 1.81 6.61 -84.79 -0.56 1.25 16 24 C -0.10 -1.01 9.97 -39.48 -0.39 -1.41 16 25 C -0.09 -0.74 9.94 -39.93 -0.40 -1.14 16 26 C -0.13 -0.99 9.96 -39.93 -0.40 -1.38 16 27 C -0.08 -0.78 9.77 -39.47 -0.39 -1.17 16 28 C -0.12 -1.45 5.74 -106.81 -0.61 -2.06 16 29 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 30 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 31 H 0.07 0.80 4.20 -52.06 -0.22 0.58 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 35 H 0.36 8.00 5.73 -40.82 -0.23 7.77 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.83 8.02 -51.93 -0.42 1.42 16 39 H 0.20 2.47 2.12 -55.48 -0.12 2.35 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.15 1.88 7.73 -52.48 -0.41 1.47 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -34.24 352.87 -9.36 -43.59 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.50 Total: 9.07 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -4.45 Total: -2.91 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.10 Total: -61.36 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.24 -9.36 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989485927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.814 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds