Wall clock time and date at job start Tue Mar 31 2020 14:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.87773 * 2 1 4 4 C 1.54324 * 109.87986 * 238.98504 * 2 1 3 5 5 C 1.55156 * 102.94340 * 218.39218 * 4 2 1 6 6 H 1.09001 * 111.00232 * 153.61203 * 5 4 2 7 7 N 1.46498 * 111.00441 * 277.42813 * 5 4 2 8 8 C 1.36936 * 119.99978 * 205.00018 * 7 5 4 9 9 H 1.07998 * 119.99752 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99596 * 180.02562 * 8 7 5 11 11 N 1.31625 * 119.99764 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 120.00491 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47390 * 270.00301 * 12 10 8 14 14 H 1.48495 * 109.47101 * 29.99850 * 12 10 8 15 15 H 1.48497 * 109.47354 * 150.00231 * 12 10 8 16 16 C 1.54908 * 101.58147 * 35.50236 * 5 4 2 17 17 N 1.47025 * 109.88144 * 121.18209 * 2 1 3 18 18 C 1.34772 * 125.64424 * 298.30881 * 17 2 1 19 19 O 1.21574 * 119.99787 * 181.68844 * 18 17 2 20 20 C 1.47757 * 120.00347 * 1.68447 * 18 17 2 21 21 C 1.40603 * 120.26631 * 351.07861 * 20 18 17 22 22 N 1.30798 * 121.53493 * 179.71055 * 21 20 18 23 23 C 1.33822 * 121.71904 * 0.54863 * 22 21 20 24 24 C 1.40525 * 120.81238 * 179.70375 * 23 22 21 25 25 C 1.36128 * 119.81663 * 180.02562 * 24 23 22 26 26 C 1.39338 * 121.08691 * 359.97438 * 25 24 23 27 27 C 1.36144 * 120.83628 * 0.02562 * 26 25 24 28 28 C 1.40541 * 119.61714 * 359.97438 * 27 26 25 29 29 C 1.39012 * 120.27107 * 171.35592 * 20 18 17 30 30 H 1.08990 * 109.47194 * 168.41752 * 1 2 3 31 31 H 1.09004 * 109.46827 * 288.41890 * 1 2 3 32 32 H 1.09004 * 109.46540 * 48.41423 * 1 2 3 33 33 H 1.08998 * 110.71980 * 100.03031 * 4 2 1 34 34 H 1.09002 * 110.87366 * 336.82493 * 4 2 1 35 35 H 0.97003 * 119.99934 * 24.99723 * 7 5 4 36 36 H 0.96995 * 120.00266 * 179.97438 * 11 10 8 37 37 H 1.08998 * 110.36545 * 81.82889 * 16 5 4 38 38 H 1.09000 * 110.36959 * 204.15029 * 16 5 4 39 39 H 1.07999 * 119.22657 * 359.97438 * 21 20 18 40 40 H 1.07997 * 120.08864 * 0.06884 * 24 23 22 41 41 H 1.08003 * 119.45905 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.58138 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.19221 * 179.97438 * 27 26 25 44 44 H 1.08007 * 121.01501 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2876 -1.5134 -0.6946 6 1 3.4854 -2.4090 -1.2835 7 7 4.4674 -0.6461 -0.6504 8 6 5.7217 -1.1933 -0.7005 9 1 5.8411 -2.2642 -0.7722 10 6 6.8396 -0.3715 -0.6581 11 7 8.0452 -0.8974 -0.7068 12 14 6.6330 1.4808 -0.5333 13 1 6.5633 2.0642 -1.8971 14 1 5.3808 1.7908 0.2022 15 1 7.7907 2.0601 0.1943 16 6 2.8145 -1.8806 0.7340 17 7 2.0301 -0.7159 1.1829 18 6 1.8087 -0.3648 2.4651 19 8 2.2989 -1.0162 3.3669 20 6 0.9704 0.8118 2.7748 21 6 0.5556 1.6768 1.7469 22 7 -0.1912 2.7222 1.9922 23 6 -0.5890 3.0272 3.2330 24 6 -1.3862 4.1587 3.4756 25 6 -1.7789 4.4502 4.7460 26 6 -1.4038 3.6431 5.8181 27 6 -0.6320 2.5385 5.6235 28 6 -0.2084 2.2072 4.3251 29 6 0.5901 1.0758 4.0856 30 1 -0.3633 -1.0066 -0.2063 31 1 -0.3633 0.3247 0.9751 32 1 -0.3632 0.6822 -0.7687 33 1 2.3530 -0.0432 -2.0201 34 1 1.3064 -1.4435 -1.6232 35 1 4.3601 0.3158 -0.5856 36 1 8.8264 -0.3231 -0.6775 37 1 2.1886 -2.7725 0.7088 38 1 3.6716 -2.0360 1.3893 39 1 0.8574 1.4709 0.7305 40 1 -1.6872 4.7948 2.6564 41 1 -2.3919 5.3210 4.9259 42 1 -1.7294 3.8970 6.8161 43 1 -0.3471 1.9205 6.4620 44 1 0.8978 0.4304 4.8951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989485927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:26 Heat of formation + Delta-G solvation = 62.177030 kcal Electronic energy + Delta-G solvation = -27460.990568 eV Core-core repulsion = 23765.456614 eV Total energy + Delta-G solvation = -3695.533954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47623 -41.05835 -39.04808 -38.13758 -36.19913 -34.54299 -33.87648 -32.80781 -32.04670 -31.04262 -30.32785 -27.21117 -26.11275 -25.13122 -24.91930 -23.47387 -23.13520 -21.67621 -20.73916 -19.82742 -19.65083 -18.77358 -17.82173 -17.25079 -17.07586 -16.45284 -16.26529 -16.03760 -15.87245 -15.57458 -15.18396 -15.05834 -14.94063 -14.63433 -14.34421 -14.24513 -14.07334 -13.64758 -13.54512 -13.22556 -13.03211 -12.85680 -12.71176 -12.55224 -12.44283 -12.26701 -12.14383 -11.91743 -11.78995 -11.66236 -11.58392 -11.33526 -11.07843 -10.56478 -9.92966 -9.73724 -9.34462 -9.26111 -8.04880 -5.38022 -0.87719 -0.45066 0.78926 1.32736 1.36810 1.42243 1.45550 1.83202 2.12504 2.44634 2.98347 3.08214 3.23779 3.29765 3.49326 3.51366 3.56906 3.62826 3.72414 3.80567 3.90166 4.00283 4.16911 4.18911 4.29202 4.33585 4.43818 4.61171 4.65018 4.65690 4.66593 4.82164 4.89854 4.95133 4.98015 5.03535 5.10757 5.17777 5.28305 5.30302 5.35190 5.38120 5.43460 5.76669 5.82124 6.19624 6.40053 6.71081 6.95473 7.05279 7.81071 7.97496 9.16543 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.003503 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.853408 B = 7992.036853 C = 8410.163578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 H 0.085 0.915 4 C -0.121 4.121 5 C 0.162 3.838 6 H 0.091 0.909 7 N -0.740 5.740 8 C -0.227 4.227 9 H 0.064 0.936 10 C -0.062 4.062 11 N -0.982 5.982 12 Si 0.948 3.052 13 H -0.267 1.267 14 H -0.264 1.264 15 H -0.303 1.303 16 C 0.083 3.917 17 N -0.595 5.595 18 C 0.569 3.431 19 O -0.585 6.585 20 C -0.213 4.213 21 C 0.129 3.871 22 N -0.495 5.495 23 C 0.120 3.880 24 C -0.119 4.119 25 C -0.076 4.076 26 C -0.116 4.116 27 C -0.094 4.094 28 C -0.134 4.134 29 C 0.007 3.993 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.364 0.636 36 H 0.257 0.743 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.211 0.789 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.150 0.850 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.344 10.266 7.237 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.003 3.997 3 H 0.103 0.897 4 C -0.159 4.159 5 C 0.052 3.948 6 H 0.109 0.891 7 N -0.381 5.381 8 C -0.358 4.358 9 H 0.082 0.918 10 C -0.254 4.254 11 N -0.633 5.633 12 Si 0.776 3.224 13 H -0.193 1.193 14 H -0.189 1.189 15 H -0.230 1.230 16 C -0.042 4.042 17 N -0.326 5.326 18 C 0.359 3.641 19 O -0.467 6.467 20 C -0.219 4.219 21 C -0.042 4.042 22 N -0.203 5.203 23 C 0.000 4.000 24 C -0.137 4.137 25 C -0.096 4.096 26 C -0.133 4.133 27 C -0.113 4.113 28 C -0.136 4.136 29 C -0.019 4.019 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.197 0.803 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.226 0.774 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.182 0.818 43 H 0.168 0.832 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -27.258 10.404 7.106 30.029 hybrid contribution 1.349 0.043 1.041 1.705 sum -25.909 10.446 8.147 29.099 Atomic orbital electron populations 1.22848 0.92175 1.05010 1.03209 1.22260 0.95859 0.96186 0.85423 0.89719 1.23111 0.96836 1.00528 0.95429 1.21627 0.86061 0.94852 0.92223 0.89086 1.42692 1.01707 1.04838 1.88893 1.19070 0.83308 0.93004 1.40383 0.91770 1.25434 0.94855 1.02151 1.02918 1.69868 0.97831 1.35814 1.59750 0.85522 0.76923 0.81616 0.78354 1.19257 1.18894 1.22988 1.23152 0.94239 0.88136 0.98631 1.48414 1.50944 1.28642 1.04626 1.18018 0.80353 0.84062 0.81667 1.90738 1.53371 1.56255 1.46331 1.20851 1.05270 0.99224 0.96517 1.25134 0.90070 0.87286 1.01731 1.68160 1.13062 1.17307 1.21774 1.19563 0.96356 0.95747 0.88382 1.21077 0.97844 0.95519 0.99276 1.21458 0.97138 0.99733 0.91253 1.21397 0.96912 0.93869 1.01161 1.21374 0.97026 0.98327 0.94545 1.19013 1.01383 0.96556 0.96602 1.22109 0.89864 0.93939 0.95996 0.90082 0.92357 0.87713 0.88203 0.86057 0.80329 0.93442 0.89556 0.94110 0.77357 0.83469 0.81549 0.81833 0.83187 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 7.81 71.98 0.56 -2.47 16 2 C 0.10 2.46 2.72 45.34 0.12 2.59 16 3 H 0.09 2.03 6.25 -2.39 -0.01 2.02 16 4 C -0.12 -2.65 6.07 31.78 0.19 -2.46 16 5 C 0.16 5.37 3.72 46.38 0.17 5.55 16 6 H 0.09 2.96 8.09 -2.39 -0.02 2.94 16 7 N -0.74 -32.65 5.04 -316.38 -1.59 -34.24 16 8 C -0.23 -12.60 10.44 84.03 0.88 -11.72 16 9 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 10 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 11 N -0.98 -63.36 13.97 21.65 0.30 -63.05 16 12 Si 0.95 46.18 27.74 68.60 1.90 48.08 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.26 -12.00 6.52 99.48 0.65 -11.35 16 15 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 16 C 0.08 2.88 6.61 86.86 0.57 3.46 16 17 N -0.60 -19.04 3.06 -798.50 -2.45 -21.49 16 18 C 0.57 20.49 7.65 86.76 0.66 21.15 16 19 O -0.58 -25.54 16.66 -3.95 -0.07 -25.60 16 20 C -0.21 -6.45 5.33 -20.00 -0.11 -6.55 16 21 C 0.13 3.43 7.35 85.42 0.63 4.06 16 22 N -0.49 -13.03 10.30 -187.86 -1.94 -14.96 16 23 C 0.12 2.90 6.61 40.27 0.27 3.17 16 24 C -0.12 -2.07 9.97 22.34 0.22 -1.85 16 25 C -0.08 -0.88 9.94 22.04 0.22 -0.66 16 26 C -0.12 -1.32 9.96 22.05 0.22 -1.10 16 27 C -0.09 -1.54 9.77 22.34 0.22 -1.32 16 28 C -0.13 -3.13 5.74 -21.28 -0.12 -3.25 16 29 C 0.01 0.20 9.46 23.02 0.22 0.42 16 30 H 0.08 1.24 7.88 -2.39 -0.02 1.22 16 31 H 0.06 1.23 4.20 -2.51 -0.01 1.22 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.12 1.84 7.68 -2.39 -0.02 1.83 16 35 H 0.36 15.72 5.73 -92.71 -0.53 15.18 16 36 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.04 1.79 8.02 -2.39 -0.02 1.77 16 39 H 0.21 4.86 2.12 -5.72 -0.01 4.85 16 40 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 42 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.15 3.94 7.73 -2.91 -0.02 3.91 16 Total: -1.00 -79.90 352.87 2.01 -77.89 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.45 Total: 27.58 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.40 Total: 5.80 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -5.67 Total: -133.75 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.07 Total: -25.60 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -79.90 2.01 -77.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989485927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.071 kcal (2) G-P(sol) polarization free energy of solvation -79.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds