Wall clock time and date at job start Tue Mar 31 2020 14:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.87054 * 2 1 4 4 C 1.54320 * 109.88239 * 238.99036 * 2 1 3 5 5 C 1.55157 * 102.94459 * 218.38645 * 4 2 1 6 6 H 1.08996 * 111.00137 * 277.38723 * 5 4 2 7 7 N 1.46494 * 111.00338 * 153.57503 * 5 4 2 8 8 C 1.36938 * 120.00028 * 155.00479 * 7 5 4 9 9 H 1.07996 * 120.00039 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00459 * 179.72406 * 8 7 5 11 11 N 1.31628 * 119.99723 * 0.26817 * 10 8 7 12 12 Si 1.86793 * 120.00452 * 180.27407 * 10 8 7 13 13 H 1.48495 * 109.47224 * 89.99640 * 12 10 8 14 14 H 1.48494 * 109.47340 * 209.99956 * 12 10 8 15 15 H 1.48508 * 109.46874 * 329.99547 * 12 10 8 16 16 C 1.54913 * 101.57656 * 35.50168 * 5 4 2 17 17 N 1.47021 * 109.88621 * 121.17803 * 2 1 3 18 18 C 1.34774 * 125.64877 * 298.37777 * 17 2 1 19 19 O 1.21547 * 120.00107 * 354.26431 * 18 17 2 20 20 C 1.47896 * 119.99782 * 174.26036 * 18 17 2 21 21 C 1.40595 * 119.72730 * 335.03906 * 20 18 17 22 22 C 1.35855 * 120.94520 * 179.70880 * 21 20 18 23 23 C 1.40483 * 119.88100 * 0.56045 * 22 21 20 24 24 C 1.40490 * 121.84162 * 179.74498 * 23 22 21 25 25 N 1.31218 * 119.94096 * 179.97438 * 24 23 22 26 26 C 1.32562 * 122.80221 * 0.02562 * 25 24 23 27 27 C 1.36218 * 121.84781 * 359.97438 * 26 25 24 28 28 C 1.40762 * 118.67427 * 0.02562 * 27 26 25 29 29 C 1.38524 * 119.72684 * 155.31101 * 20 18 17 30 30 H 1.08996 * 109.46608 * 181.01448 * 1 2 3 31 31 H 1.09000 * 109.46961 * 301.00946 * 1 2 3 32 32 H 1.08998 * 109.47335 * 61.00960 * 1 2 3 33 33 H 1.09000 * 110.72193 * 100.02086 * 4 2 1 34 34 H 1.09003 * 110.87199 * 336.82181 * 4 2 1 35 35 H 0.97006 * 120.00529 * 334.99887 * 7 5 4 36 36 H 0.96994 * 120.00127 * 179.97438 * 11 10 8 37 37 H 1.08995 * 110.36597 * 81.83426 * 16 5 4 38 38 H 1.09008 * 110.36143 * 204.15463 * 16 5 4 39 39 H 1.07999 * 119.52745 * 0.02562 * 21 20 18 40 40 H 1.08001 * 120.05688 * 180.25822 * 22 21 20 41 41 H 1.07998 * 120.03029 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.07647 * 180.02562 * 26 25 24 43 43 H 1.07999 * 120.66526 * 180.02562 * 27 26 25 44 44 H 1.08001 * 120.36499 * 0.02598 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7476 -1.2438 5 6 3.2877 -1.5131 -0.6947 6 1 4.1656 -0.8679 -0.6625 7 7 3.5532 -2.7172 -1.4857 8 6 4.8164 -3.2441 -1.5277 9 1 5.6171 -2.7718 -0.9780 10 6 5.0669 -4.3883 -2.2726 11 7 4.0912 -4.9639 -2.9430 12 14 6.7884 -5.1114 -2.3237 13 1 6.9453 -6.0946 -1.2220 14 1 7.0017 -5.7903 -3.6271 15 1 7.7870 -4.0241 -2.1628 16 6 2.8145 -1.8804 0.7340 17 7 2.0301 -0.7157 1.1828 18 6 1.8078 -0.3654 2.4651 19 8 1.2323 0.6744 2.7200 20 6 2.2641 -1.2462 3.5621 21 6 2.4353 -2.6217 3.3264 22 6 2.8590 -3.4523 4.3144 23 6 3.1206 -2.9394 5.5958 24 6 3.5551 -3.7617 6.6488 25 7 3.7891 -3.2429 7.8311 26 6 3.6334 -1.9527 8.0928 27 6 3.2165 -1.0715 7.1415 28 6 2.9451 -1.5534 5.8470 29 6 2.5138 -0.7102 4.8147 30 1 -0.3632 -1.0275 0.0182 31 1 -0.3633 0.5294 0.8808 32 1 -0.3634 0.4981 -0.8989 33 1 2.3528 -0.0430 -2.0202 34 1 1.3064 -1.4434 -1.6232 35 1 2.8341 -3.1414 -1.9798 36 1 4.2662 -5.7632 -3.4638 37 1 2.1888 -2.7725 0.7087 38 1 3.6718 -2.0357 1.3892 39 1 2.2320 -3.0228 2.3444 40 1 2.9896 -4.5060 4.1163 41 1 3.6965 -4.8198 6.4853 42 1 3.8439 -1.5900 9.0881 43 1 3.0965 -0.0241 7.3756 44 1 2.3767 0.3460 4.9938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989649462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:23 Heat of formation + Delta-G solvation = 42.251008 kcal Electronic energy + Delta-G solvation = -26916.496930 eV Core-core repulsion = 23220.098919 eV Total energy + Delta-G solvation = -3696.398011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.11786 -40.03864 -37.75579 -36.95931 -34.31017 -33.22875 -32.43897 -31.49224 -30.67436 -29.82011 -28.51341 -25.74178 -25.24081 -24.05344 -23.69544 -22.60714 -21.71659 -20.43389 -19.46276 -18.30306 -17.47418 -17.27246 -16.73134 -16.45713 -15.89937 -15.26068 -15.04683 -14.67742 -14.41733 -14.07195 -13.99942 -13.76469 -13.72178 -13.54131 -13.28511 -12.90234 -12.75952 -12.57487 -12.41090 -12.19303 -12.05970 -11.76096 -11.30209 -11.18706 -11.04769 -10.78157 -10.71783 -10.42945 -10.36253 -10.11414 -9.95529 -9.83361 -9.67614 -9.25007 -9.08788 -8.50366 -8.25342 -7.17998 -5.93085 -3.24504 0.04548 0.54364 1.66686 2.44691 3.01467 3.24927 3.34368 3.40973 3.41892 3.89722 4.18399 4.31628 4.35707 4.48030 4.58012 4.63171 4.84140 4.89460 4.96341 5.03884 5.10657 5.17831 5.36050 5.41590 5.47866 5.49225 5.51366 5.59527 5.69609 5.72018 5.76317 5.87994 5.93990 6.04336 6.09078 6.12153 6.16487 6.24604 6.34899 6.38365 6.40196 6.52738 6.60138 6.73003 7.56196 7.64887 7.73639 8.19093 8.24570 9.36513 9.88739 10.23797 11.28599 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.003799 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.128002 B = 7368.337800 C = 9646.953521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 H 0.074 0.926 4 C -0.138 4.138 5 C 0.172 3.828 6 H 0.069 0.931 7 N -0.710 5.710 8 C -0.252 4.252 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.067 3.933 17 N -0.601 5.601 18 C 0.569 3.431 19 O -0.545 6.545 20 C -0.100 4.100 21 C -0.100 4.100 22 C -0.091 4.091 23 C -0.098 4.098 24 C 0.145 3.855 25 N -0.487 5.487 26 C 0.069 3.931 27 C -0.146 4.146 28 C -0.035 4.035 29 C -0.053 4.053 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.166 0.834 42 H 0.153 0.847 43 H 0.139 0.861 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 6.548 14.952 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.177 4.177 5 C 0.059 3.941 6 H 0.087 0.913 7 N -0.350 5.350 8 C -0.382 4.382 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.575 5.575 12 Si 0.738 3.262 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.059 4.059 17 N -0.334 5.334 18 C 0.358 3.642 19 O -0.424 6.424 20 C -0.104 4.104 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.100 4.100 24 C -0.027 4.027 25 N -0.195 5.195 26 C -0.074 4.074 27 C -0.166 4.166 28 C -0.040 4.040 29 C -0.072 4.072 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.183 0.817 42 H 0.170 0.830 43 H 0.157 0.843 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.659 6.638 15.886 17.836 hybrid contribution 0.425 -0.141 -0.884 0.991 sum -4.234 6.497 15.002 16.888 Atomic orbital electron populations 1.22127 0.95028 1.02274 1.02442 1.21546 0.94242 0.96269 0.84430 0.90755 1.23060 0.99201 0.99740 0.95696 1.21319 0.94806 0.89581 0.88385 0.91296 1.42317 1.09661 1.27823 1.55152 1.19248 0.86828 1.06862 1.25299 0.90935 1.24764 0.97656 0.98203 0.99644 1.69656 1.30898 1.22192 1.34791 0.86196 0.83837 0.79070 0.77100 1.21520 1.21665 1.20625 1.23818 0.94435 0.87496 1.00112 1.48498 1.51498 1.29033 1.04349 1.17932 0.79563 0.85135 0.81600 1.90742 1.43509 1.24661 1.83505 1.20015 1.02021 0.94244 0.94168 1.21686 0.96806 0.92268 1.01077 1.20961 0.98340 1.00625 0.91124 1.19184 1.00986 0.93758 0.96044 1.23281 0.92404 0.99906 0.87083 1.67392 1.14607 1.14767 1.22730 1.22164 0.97016 0.88535 0.99670 1.21959 1.00440 1.01455 0.92700 1.18105 0.98682 0.92942 0.94282 1.21334 0.95229 1.00065 0.90579 0.92434 0.91819 0.91640 0.90178 0.90268 0.77794 0.93259 0.90837 0.90703 0.83269 0.84126 0.81712 0.82985 0.84301 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.10 37.16 0.34 -1.74 16 2 C 0.14 1.95 3.43 -66.96 -0.23 1.72 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.02 6.12 -24.90 -0.15 -2.17 16 5 C 0.17 3.02 3.71 -65.78 -0.24 2.77 16 6 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 7 N -0.71 -15.83 5.24 -51.35 -0.27 -16.10 16 8 C -0.25 -6.37 9.96 -15.06 -0.15 -6.52 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 11 N -0.93 -26.11 13.06 55.49 0.72 -25.38 16 12 Si 0.91 21.03 29.55 -169.99 -5.02 16.01 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 C 0.07 1.05 4.68 -2.53 -0.01 1.04 16 17 N -0.60 -9.02 3.06 -164.10 -0.50 -9.52 16 18 C 0.57 8.92 7.38 -12.31 -0.09 8.83 16 19 O -0.54 -9.73 15.84 5.32 0.08 -9.64 16 20 C -0.10 -1.39 5.66 -104.95 -0.59 -1.98 16 21 C -0.10 -1.28 7.96 -39.55 -0.31 -1.59 16 22 C -0.09 -1.02 9.77 -39.59 -0.39 -1.40 16 23 C -0.10 -1.13 5.75 -106.78 -0.61 -1.74 16 24 C 0.14 1.53 11.04 -16.97 -0.19 1.35 16 25 N -0.49 -5.62 10.29 -13.14 -0.14 -5.75 16 26 C 0.07 0.69 11.07 -17.96 -0.20 0.49 16 27 C -0.15 -1.45 9.88 -39.35 -0.39 -1.83 16 28 C -0.03 -0.42 5.74 -106.83 -0.61 -1.03 16 29 C -0.05 -0.67 9.37 -38.78 -0.36 -1.03 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.90 7.10 -51.93 -0.37 0.53 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 35 H 0.39 9.22 7.76 -40.82 -0.32 8.90 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 37 H 0.07 1.17 6.79 -51.93 -0.35 0.81 16 38 H 0.07 1.18 6.84 -51.92 -0.36 0.82 16 39 H 0.15 1.91 4.56 -52.49 -0.24 1.67 16 40 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.14 1.67 7.82 -52.49 -0.41 1.26 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -30.39 362.11 -9.76 -40.15 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.79 Total: 9.89 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -4.30 Total: -5.10 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.18 Total: -56.76 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.39 -9.76 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989649462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.397 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds