Wall clock time and date at job start Tue Mar 31 2020 14:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.32872 * 2 1 4 4 C 1.54913 * 110.36791 * 122.23245 * 2 1 3 5 5 C 1.55152 * 101.58375 * 155.96056 * 4 2 1 6 6 H 1.09000 * 110.71874 * 83.04277 * 5 4 2 7 7 N 1.46496 * 110.71948 * 206.13533 * 5 4 2 8 8 C 1.36940 * 120.00106 * 204.72473 * 7 5 4 9 9 H 1.07999 * 119.99753 * 0.27702 * 8 7 5 10 10 C 1.38808 * 120.00184 * 180.27614 * 8 7 5 11 11 N 1.31621 * 120.00367 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46825 * 60.00144 * 12 10 8 14 14 H 1.48497 * 109.47067 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46854 * 300.00306 * 12 10 8 16 16 C 1.54325 * 102.94287 * 324.50054 * 5 4 2 17 17 N 1.47016 * 107.26896 * 22.19168 * 16 5 4 18 18 C 1.34783 * 125.64445 * 181.02448 * 17 16 5 19 19 O 1.21569 * 119.99661 * 174.29849 * 18 17 16 20 20 C 1.47769 * 119.99977 * 354.29644 * 18 17 16 21 21 C 1.40657 * 119.69871 * 187.06654 * 20 18 17 22 22 C 1.35844 * 120.87907 * 179.75432 * 21 20 18 23 23 C 1.40395 * 119.84078 * 0.52466 * 22 21 20 24 24 C 1.40645 * 121.98098 * 179.76018 * 23 22 21 25 25 C 1.36217 * 118.73242 * 179.97438 * 24 23 22 26 26 N 1.32600 * 121.90265 * 359.97438 * 25 24 23 27 27 C 1.31234 * 122.74060 * 0.04274 * 26 25 24 28 28 C 1.40547 * 119.88266 * 359.95204 * 27 26 25 29 29 C 1.38562 * 119.70077 * 7.34931 * 20 18 17 30 30 H 1.08999 * 109.47362 * 297.76719 * 1 2 3 31 31 H 1.09003 * 109.46891 * 57.76798 * 1 2 3 32 32 H 1.08996 * 109.46582 * 177.76464 * 1 2 3 33 33 H 1.08999 * 111.00294 * 37.88387 * 4 2 1 34 34 H 1.09008 * 111.00185 * 274.03770 * 4 2 1 35 35 H 0.96999 * 120.00073 * 24.99936 * 7 5 4 36 36 H 0.96995 * 120.00441 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.87711 * 141.61141 * 16 5 4 38 38 H 1.08997 * 109.87812 * 262.77560 * 16 5 4 39 39 H 1.08002 * 119.55756 * 0.02562 * 21 20 18 40 40 H 1.07997 * 120.08168 * 180.26704 * 22 21 20 41 41 H 1.08001 * 120.63354 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.05148 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.05683 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.34541 * 359.95443 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0691 -0.7746 1.2285 5 6 3.4789 -1.1964 0.7366 6 1 4.1949 -0.3868 0.8780 7 7 3.9272 -2.4086 1.4264 8 6 5.2655 -2.6728 1.5464 9 1 5.9905 -1.9852 1.1365 10 6 5.6903 -3.8242 2.1950 11 7 4.8068 -4.6618 2.6951 12 14 7.5159 -4.1849 2.3581 13 1 8.1722 -3.0861 3.1112 14 1 7.7043 -5.4651 3.0866 15 1 8.1223 -4.2899 1.0066 16 6 3.2524 -1.4744 -0.7644 17 7 2.0454 -0.7381 -1.1674 18 6 1.5008 -0.7373 -2.4003 19 8 0.4415 -0.1741 -2.5964 20 6 2.1914 -1.4211 -3.5135 21 6 1.6977 -1.2918 -4.8242 22 6 2.3165 -1.9058 -5.8660 23 6 3.4581 -2.6902 -5.6366 24 6 4.1309 -3.3497 -6.6808 25 6 5.2327 -4.0933 -6.3831 26 7 5.6849 -4.2103 -5.1421 27 6 5.1090 -3.6245 -4.1187 28 6 3.9644 -2.8334 -4.3177 29 6 3.3160 -2.1885 -3.2558 30 1 -0.3634 0.4788 0.9093 31 1 -0.3633 0.5481 -0.8693 32 1 -0.3632 -1.0269 -0.0401 33 1 1.4522 -1.6476 1.4414 34 1 2.1379 -0.1245 2.1008 35 1 3.2761 -3.0260 1.7946 36 1 5.1035 -5.4666 3.1480 37 1 4.1096 -1.1245 -1.3396 38 1 3.1062 -2.5425 -0.9256 39 1 0.8174 -0.6928 -5.0053 40 1 1.9288 -1.7943 -6.8678 41 1 3.7812 -3.2675 -7.6993 42 1 5.7531 -4.6023 -7.1810 43 1 5.5140 -3.7498 -3.1254 44 1 3.6892 -2.2880 -2.2473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989650748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:05 Heat of formation + Delta-G solvation = 61.311074 kcal Electronic energy + Delta-G solvation = -27296.722868 eV Core-core repulsion = 23601.151363 eV Total energy + Delta-G solvation = -3695.571505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10544 -40.01124 -37.71446 -36.87097 -34.28524 -33.51932 -31.85697 -31.49194 -31.22743 -29.44052 -28.52183 -26.02557 -24.75242 -24.13411 -23.79133 -22.39087 -21.87982 -20.41984 -19.59019 -18.15592 -17.41075 -17.08623 -16.78300 -16.26893 -15.95475 -15.14237 -14.90986 -14.72623 -14.39956 -14.14973 -13.91137 -13.79496 -13.73114 -13.54866 -13.27602 -12.93472 -12.76281 -12.30959 -12.07204 -11.95987 -11.90620 -11.83806 -11.53767 -11.27201 -10.95984 -10.75744 -10.51674 -10.38255 -10.30127 -10.14503 -9.82255 -9.70668 -9.45570 -9.22107 -9.04176 -8.45069 -8.21343 -7.18745 -5.92308 -3.24535 0.12632 0.63652 1.70765 2.51415 3.06449 3.36268 3.37035 3.41818 3.42804 3.99467 4.31209 4.33737 4.44372 4.52767 4.61388 4.71356 4.90101 4.94016 5.01860 5.10905 5.14710 5.17269 5.40255 5.46112 5.49610 5.53629 5.57707 5.67992 5.73063 5.78290 5.80355 5.87531 5.92578 6.02259 6.08708 6.14511 6.22076 6.33049 6.39212 6.41611 6.50496 6.58284 6.65382 6.75128 7.55388 7.67626 7.87457 8.23965 8.27609 9.36883 9.89100 10.23879 11.29096 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.004953 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.706544 B = 5651.770508 C = 8648.503868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.171 3.829 6 H 0.071 0.929 7 N -0.712 5.712 8 C -0.256 4.256 9 H 0.073 0.927 10 C -0.003 4.003 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.283 1.283 16 C 0.057 3.943 17 N -0.602 5.602 18 C 0.571 3.429 19 O -0.545 6.545 20 C -0.133 4.133 21 C -0.046 4.046 22 C -0.129 4.129 23 C -0.008 4.008 24 C -0.168 4.168 25 C 0.084 3.916 26 N -0.494 5.494 27 C 0.165 3.835 28 C -0.124 4.124 29 C -0.076 4.076 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.388 0.612 36 H 0.259 0.741 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 6.540 -14.614 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.058 3.942 6 H 0.089 0.911 7 N -0.351 5.351 8 C -0.387 4.387 9 H 0.091 0.909 10 C -0.201 4.201 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.209 1.209 16 C -0.068 4.068 17 N -0.335 5.335 18 C 0.361 3.639 19 O -0.425 6.425 20 C -0.136 4.136 21 C -0.066 4.066 22 C -0.147 4.147 23 C -0.013 4.013 24 C -0.188 4.188 25 C -0.059 4.059 26 N -0.202 5.202 27 C -0.007 4.007 28 C -0.126 4.126 29 C -0.095 4.095 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.189 0.811 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.418 6.250 -14.745 16.613 hybrid contribution 0.112 -0.106 -0.106 0.187 sum -4.305 6.144 -14.851 16.638 Atomic orbital electron populations 1.22138 0.94060 1.02777 1.02682 1.21917 0.94974 0.95283 0.84452 0.90744 1.23200 0.97793 1.00446 0.96271 1.21234 0.93460 0.91341 0.88142 0.91067 1.42396 1.05350 1.22193 1.65177 1.19201 0.83222 1.04564 1.31694 0.90881 1.24767 0.97693 0.97233 1.00369 1.69643 1.32500 1.13234 1.41990 0.86294 0.84794 0.77382 0.77861 1.21110 1.21618 1.20920 1.23828 0.85687 0.96471 1.00852 1.48488 1.28388 1.47893 1.08684 1.17880 0.84404 0.80210 0.81421 1.90693 1.21882 1.46696 1.83212 1.19942 0.97610 1.01813 0.94229 1.20953 0.98546 0.96355 0.90753 1.20816 0.95613 0.98761 0.99546 1.18337 0.94791 0.95336 0.92831 1.21885 0.97721 0.99753 0.99431 1.22265 0.93827 0.95896 0.93868 1.67524 1.31842 1.21074 0.99755 1.23511 0.89610 0.88966 0.98567 1.19086 0.98580 1.01345 0.93626 1.23430 0.92722 0.91536 1.01828 0.92343 0.90090 0.92685 0.90411 0.89972 0.77775 0.93164 0.91162 0.89735 0.84469 0.84814 0.84554 0.83075 0.81076 0.80040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.52 37.16 0.32 -1.84 16 2 C 0.14 1.90 3.78 -66.42 -0.25 1.65 16 3 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 4 C -0.14 -2.02 6.13 -24.58 -0.15 -2.17 16 5 C 0.17 2.91 3.61 -66.10 -0.24 2.67 16 6 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 7 N -0.71 -15.65 5.15 -51.66 -0.27 -15.92 16 8 C -0.26 -6.35 9.96 -15.06 -0.15 -6.50 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 10 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 11 N -0.93 -26.07 13.06 55.49 0.72 -25.34 16 12 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 16 C 0.06 0.88 4.61 -3.07 -0.01 0.86 16 17 N -0.60 -9.03 3.24 -170.93 -0.55 -9.58 16 18 C 0.57 9.01 7.64 -12.36 -0.09 8.92 16 19 O -0.55 -9.55 13.92 5.31 0.07 -9.47 16 20 C -0.13 -1.89 5.87 -104.97 -0.62 -2.50 16 21 C -0.05 -0.58 9.49 -39.53 -0.38 -0.95 16 22 C -0.13 -1.42 9.77 -39.63 -0.39 -1.81 16 23 C -0.01 -0.09 5.75 -106.74 -0.61 -0.71 16 24 C -0.17 -1.74 9.87 -39.40 -0.39 -2.13 16 25 C 0.08 0.95 11.07 -17.95 -0.20 0.75 16 26 N -0.49 -6.82 10.30 -13.12 -0.14 -6.96 16 27 C 0.16 2.23 11.05 -16.94 -0.19 2.04 16 28 C -0.12 -1.67 5.74 -106.87 -0.61 -2.28 16 29 C -0.08 -1.04 8.39 -38.75 -0.33 -1.36 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.21 6.10 -51.93 -0.32 0.89 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 34 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 35 H 0.39 9.26 7.76 -40.82 -0.32 8.95 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.07 1.01 6.75 -51.93 -0.35 0.66 16 38 H 0.08 1.40 6.61 -51.93 -0.34 1.06 16 39 H 0.14 1.61 7.62 -52.49 -0.40 1.21 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.17 2.13 8.06 -52.49 -0.42 1.70 16 44 H 0.18 2.51 2.68 -61.25 -0.16 2.35 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -29.89 357.77 -9.82 -39.72 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.65 Total: 11.86 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -4.38 Total: -5.55 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.23 Total: -57.80 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.89 -9.82 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989650748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.026 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds