Wall clock time and date at job start Tue Mar 31 2020 14:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.32872 * 2 1 4 4 C 1.54913 * 110.36791 * 122.23245 * 2 1 3 5 5 C 1.55152 * 101.58375 * 155.96056 * 4 2 1 6 6 H 1.09000 * 110.71874 * 83.04277 * 5 4 2 7 7 N 1.46496 * 110.71948 * 206.13533 * 5 4 2 8 8 C 1.36940 * 120.00106 * 204.72473 * 7 5 4 9 9 H 1.07999 * 119.99753 * 0.27702 * 8 7 5 10 10 C 1.38808 * 120.00184 * 180.27614 * 8 7 5 11 11 N 1.31621 * 120.00367 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46825 * 60.00144 * 12 10 8 14 14 H 1.48497 * 109.47067 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46854 * 300.00306 * 12 10 8 16 16 C 1.54325 * 102.94287 * 324.50054 * 5 4 2 17 17 N 1.47016 * 107.26896 * 22.19168 * 16 5 4 18 18 C 1.34783 * 125.64445 * 181.02448 * 17 16 5 19 19 O 1.21569 * 119.99661 * 174.29849 * 18 17 16 20 20 C 1.47769 * 119.99977 * 354.29644 * 18 17 16 21 21 C 1.40657 * 119.69871 * 187.06654 * 20 18 17 22 22 C 1.35844 * 120.87907 * 179.75432 * 21 20 18 23 23 C 1.40395 * 119.84078 * 0.52466 * 22 21 20 24 24 C 1.40645 * 121.98098 * 179.76018 * 23 22 21 25 25 C 1.36217 * 118.73242 * 179.97438 * 24 23 22 26 26 N 1.32600 * 121.90265 * 359.97438 * 25 24 23 27 27 C 1.31234 * 122.74060 * 0.04274 * 26 25 24 28 28 C 1.40547 * 119.88266 * 359.95204 * 27 26 25 29 29 C 1.38562 * 119.70077 * 7.34931 * 20 18 17 30 30 H 1.08999 * 109.47362 * 297.76719 * 1 2 3 31 31 H 1.09003 * 109.46891 * 57.76798 * 1 2 3 32 32 H 1.08996 * 109.46582 * 177.76464 * 1 2 3 33 33 H 1.08999 * 111.00294 * 37.88387 * 4 2 1 34 34 H 1.09008 * 111.00185 * 274.03770 * 4 2 1 35 35 H 0.96999 * 120.00073 * 24.99936 * 7 5 4 36 36 H 0.96995 * 120.00441 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.87711 * 141.61141 * 16 5 4 38 38 H 1.08997 * 109.87812 * 262.77560 * 16 5 4 39 39 H 1.08002 * 119.55756 * 0.02562 * 21 20 18 40 40 H 1.07997 * 120.08168 * 180.26704 * 22 21 20 41 41 H 1.08001 * 120.63354 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.05148 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.05683 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.34541 * 359.95443 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0691 -0.7746 1.2285 5 6 3.4789 -1.1964 0.7366 6 1 4.1949 -0.3868 0.8780 7 7 3.9272 -2.4086 1.4264 8 6 5.2655 -2.6728 1.5464 9 1 5.9905 -1.9852 1.1365 10 6 5.6903 -3.8242 2.1950 11 7 4.8068 -4.6618 2.6951 12 14 7.5159 -4.1849 2.3581 13 1 8.1722 -3.0861 3.1112 14 1 7.7043 -5.4651 3.0866 15 1 8.1223 -4.2899 1.0066 16 6 3.2524 -1.4744 -0.7644 17 7 2.0454 -0.7381 -1.1674 18 6 1.5008 -0.7373 -2.4003 19 8 0.4415 -0.1741 -2.5964 20 6 2.1914 -1.4211 -3.5135 21 6 1.6977 -1.2918 -4.8242 22 6 2.3165 -1.9058 -5.8660 23 6 3.4581 -2.6902 -5.6366 24 6 4.1309 -3.3497 -6.6808 25 6 5.2327 -4.0933 -6.3831 26 7 5.6849 -4.2103 -5.1421 27 6 5.1090 -3.6245 -4.1187 28 6 3.9644 -2.8334 -4.3177 29 6 3.3160 -2.1885 -3.2558 30 1 -0.3634 0.4788 0.9093 31 1 -0.3633 0.5481 -0.8693 32 1 -0.3632 -1.0269 -0.0401 33 1 1.4522 -1.6476 1.4414 34 1 2.1379 -0.1245 2.1008 35 1 3.2761 -3.0260 1.7946 36 1 5.1035 -5.4666 3.1480 37 1 4.1096 -1.1245 -1.3396 38 1 3.1062 -2.5425 -0.9256 39 1 0.8174 -0.6928 -5.0053 40 1 1.9288 -1.7943 -6.8678 41 1 3.7812 -3.2675 -7.6993 42 1 5.7531 -4.6023 -7.1810 43 1 5.5140 -3.7498 -3.1254 44 1 3.6892 -2.2880 -2.2473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989650748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:04 Heat of formation + Delta-G solvation = 44.182128 kcal Electronic energy + Delta-G solvation = -27297.465635 eV Core-core repulsion = 23601.151363 eV Total energy + Delta-G solvation = -3696.314272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13559 -41.14137 -38.93964 -37.95496 -35.97019 -34.52909 -33.25689 -32.88374 -32.20441 -30.43810 -30.09385 -27.21757 -26.03833 -25.47276 -24.99316 -23.38705 -23.07930 -21.77560 -20.74015 -19.26797 -19.09453 -18.12636 -17.93431 -17.35845 -17.12942 -16.55960 -16.12066 -15.89003 -15.61052 -15.39834 -15.18777 -15.11058 -14.88977 -14.58710 -14.46539 -14.27863 -13.98105 -13.48328 -13.29986 -13.16047 -12.99416 -12.90052 -12.82444 -12.77395 -12.56671 -12.27421 -12.09930 -11.77476 -11.70068 -11.51240 -11.24205 -11.00261 -10.71681 -10.47812 -10.22418 -9.68359 -9.13371 -9.04083 -7.91965 -5.22011 -0.84187 -0.33097 0.75125 1.47598 1.53829 1.54508 1.60121 1.87684 2.28696 2.59121 3.03166 3.23861 3.37760 3.44763 3.53597 3.67420 3.76951 3.81392 3.84886 3.86814 4.03527 4.09320 4.17939 4.27303 4.31418 4.47332 4.51442 4.62247 4.65108 4.68557 4.72963 4.77465 4.83929 4.86572 4.91128 5.08253 5.13286 5.17171 5.27571 5.31686 5.32669 5.52295 5.58237 5.60404 5.72269 6.28081 6.43631 6.94664 7.04583 7.36881 8.07490 8.31183 9.30547 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.004953 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.706544 B = 5651.770508 C = 8648.503868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 H 0.092 0.908 4 C -0.127 4.127 5 C 0.164 3.836 6 H 0.079 0.921 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.084 0.916 10 C -0.065 4.065 11 N -0.966 5.966 12 Si 0.963 3.037 13 H -0.279 1.279 14 H -0.302 1.302 15 H -0.276 1.276 16 C 0.073 3.927 17 N -0.602 5.602 18 C 0.567 3.433 19 O -0.565 6.565 20 C -0.145 4.145 21 C -0.061 4.061 22 C -0.110 4.110 23 C -0.023 4.023 24 C -0.151 4.151 25 C 0.071 3.929 26 N -0.515 5.515 27 C 0.145 3.855 28 C -0.135 4.135 29 C -0.082 4.082 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.376 0.624 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.144 0.856 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.182 0.818 43 H 0.168 0.832 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 7.731 -16.987 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.033 3.967 3 H 0.110 0.890 4 C -0.166 4.166 5 C 0.054 3.946 6 H 0.097 0.903 7 N -0.361 5.361 8 C -0.374 4.374 9 H 0.102 0.898 10 C -0.258 4.258 11 N -0.616 5.616 12 Si 0.793 3.207 13 H -0.205 1.205 14 H -0.229 1.229 15 H -0.202 1.202 16 C -0.053 4.053 17 N -0.335 5.335 18 C 0.358 3.642 19 O -0.447 6.447 20 C -0.148 4.148 21 C -0.081 4.081 22 C -0.128 4.128 23 C -0.028 4.028 24 C -0.171 4.171 25 C -0.072 4.072 26 N -0.224 5.224 27 C -0.026 4.026 28 C -0.138 4.138 29 C -0.102 4.102 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.208 0.792 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.161 0.839 40 H 0.190 0.810 41 H 0.194 0.806 42 H 0.199 0.801 43 H 0.186 0.814 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.261 7.496 -17.142 19.188 hybrid contribution 0.028 -0.425 0.503 0.659 sum -4.233 7.071 -16.639 18.568 Atomic orbital electron populations 1.22046 0.93595 1.01844 1.03314 1.22045 0.95331 0.95788 0.83502 0.89033 1.23105 0.95832 1.00384 0.97264 1.21435 0.94945 0.89595 0.88642 0.90340 1.42516 1.04278 1.23489 1.65835 1.19604 0.84647 1.03842 1.29284 0.89819 1.25442 1.00967 0.97800 1.01543 1.69792 1.33969 1.13762 1.44095 0.85373 0.80987 0.76569 0.77803 1.20479 1.22894 1.20196 1.23495 0.86398 0.95806 0.99579 1.48520 1.28144 1.47792 1.09014 1.18168 0.84219 0.79986 0.81810 1.90677 1.22701 1.47733 1.83572 1.19975 0.97894 1.02289 0.94632 1.21082 0.99219 0.97350 0.90412 1.21183 0.94242 0.96585 1.00758 1.18683 0.95478 0.95917 0.92754 1.22288 0.96442 0.97640 1.00686 1.22815 0.94525 0.96319 0.93547 1.67507 1.32573 1.21393 1.00883 1.23502 0.90292 0.89989 0.98782 1.19161 0.98672 1.01487 0.94446 1.23268 0.93014 0.92171 1.01714 0.89962 0.91308 0.94182 0.91568 0.88255 0.79183 0.94112 0.90022 0.91220 0.83872 0.81043 0.80578 0.80138 0.81447 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 8.52 71.98 0.61 -3.32 16 2 C 0.14 3.62 3.78 45.47 0.17 3.79 16 3 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 4 C -0.13 -3.61 6.13 31.99 0.20 -3.41 16 5 C 0.16 5.52 3.61 46.18 0.17 5.68 16 6 H 0.08 2.55 8.09 -2.39 -0.02 2.53 16 7 N -0.72 -32.07 5.15 -317.34 -1.63 -33.70 16 8 C -0.24 -12.01 9.96 84.03 0.84 -11.17 16 9 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 10 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 11 N -0.97 -55.81 13.06 21.65 0.28 -55.53 16 12 Si 0.96 43.38 29.55 68.60 2.03 45.41 16 13 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 15 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 16 C 0.07 2.23 4.61 86.73 0.40 2.63 16 17 N -0.60 -17.87 3.24 -812.98 -2.64 -20.51 16 18 C 0.57 17.80 7.64 86.76 0.66 18.46 16 19 O -0.57 -19.66 13.92 -3.93 -0.05 -19.72 16 20 C -0.14 -4.07 5.87 -20.09 -0.12 -4.19 16 21 C -0.06 -1.43 9.49 22.30 0.21 -1.22 16 22 C -0.11 -2.09 9.77 22.24 0.22 -1.87 16 23 C -0.02 -0.51 5.75 -21.23 -0.12 -0.63 16 24 C -0.15 -2.60 9.87 22.39 0.22 -2.38 16 25 C 0.07 1.41 11.07 84.11 0.93 2.34 16 26 N -0.52 -13.81 10.30 -195.42 -2.01 -15.82 16 27 C 0.15 3.96 11.05 85.35 0.94 4.91 16 28 C -0.14 -3.58 5.74 -21.32 -0.12 -3.71 16 29 C -0.08 -2.27 8.39 22.81 0.19 -2.08 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 2.00 6.10 -2.39 -0.01 1.99 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 2.06 7.93 -2.39 -0.02 2.04 16 34 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.38 18.42 7.76 -92.71 -0.72 17.70 16 36 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.08 2.33 6.75 -2.39 -0.02 2.31 16 38 H 0.07 2.39 6.61 -2.39 -0.02 2.37 16 39 H 0.14 3.14 7.62 -2.91 -0.02 3.12 16 40 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.17 4.95 2.68 -11.14 -0.03 4.92 16 Total: -1.00 -65.20 357.77 2.14 -63.06 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.30 Total: 35.94 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.87 Total: 0.88 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -6.00 Total: -125.57 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.72 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.20 2.14 -63.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989650748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.239 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds