Wall clock time and date at job start Tue Mar 31 2020 14:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.87480 * 2 1 4 4 C 1.54365 * 109.90357 * 121.13905 * 2 1 3 5 5 C 1.55153 * 102.92309 * 141.57740 * 4 2 1 6 6 H 1.09006 * 111.00205 * 82.63840 * 5 4 2 7 7 N 1.46498 * 111.00631 * 206.45508 * 5 4 2 8 8 C 1.36936 * 119.99848 * 201.81770 * 7 5 4 9 9 H 1.08001 * 120.00178 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99923 * 179.72299 * 8 7 5 11 11 N 1.31616 * 119.99570 * 0.28060 * 10 8 7 12 12 Si 1.86802 * 119.99912 * 180.27864 * 10 8 7 13 13 H 1.48493 * 109.46957 * 90.00170 * 12 10 8 14 14 H 1.48504 * 109.46668 * 210.00272 * 12 10 8 15 15 H 1.48500 * 109.47089 * 329.99763 * 12 10 8 16 16 C 1.54910 * 101.61787 * 324.55106 * 5 4 2 17 17 N 1.47018 * 109.88458 * 238.98494 * 2 1 3 18 18 C 1.34773 * 125.65182 * 61.59996 * 17 2 1 19 19 O 1.21605 * 119.99864 * 355.41116 * 18 17 2 20 20 C 1.47448 * 120.00343 * 175.40731 * 18 17 2 21 21 C 1.38858 * 120.45960 * 42.17194 * 20 18 17 22 22 C 1.38897 * 120.67806 * 180.02562 * 21 20 18 23 23 C 1.36365 * 121.27325 * 0.02888 * 22 21 20 24 24 C 1.40401 * 119.98622 * 359.97438 * 23 22 21 25 25 C 1.40465 * 121.95044 * 179.97438 * 24 23 22 26 26 N 1.31277 * 119.88092 * 179.97438 * 25 24 23 27 27 C 1.32557 * 122.73540 * 0.02562 * 26 25 24 28 28 C 1.36337 * 121.81613 * 359.97438 * 27 26 25 29 29 C 1.40286 * 118.70271 * 359.77294 * 28 27 26 30 30 H 1.08995 * 109.46631 * 179.56643 * 1 2 3 31 31 H 1.09004 * 109.47014 * 299.56211 * 1 2 3 32 32 H 1.08996 * 109.47162 * 59.56333 * 1 2 3 33 33 H 1.09006 * 110.70528 * 23.23449 * 4 2 1 34 34 H 1.09005 * 110.75730 * 259.94923 * 4 2 1 35 35 H 0.96993 * 120.00417 * 21.81762 * 7 5 4 36 36 H 0.97000 * 119.99560 * 179.97438 * 11 10 8 37 37 H 1.08993 * 110.37090 * 155.82447 * 16 5 4 38 38 H 1.09004 * 110.36403 * 278.15294 * 16 5 4 39 39 H 1.08001 * 119.66159 * 359.97438 * 21 20 18 40 40 H 1.08004 * 119.36581 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.01002 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.05674 * 359.97438 * 25 24 23 43 43 H 1.07995 * 119.09347 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.64760 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0555 -0.7506 1.2423 5 6 3.2876 -1.5151 0.6904 6 1 4.1658 -0.8701 0.6592 7 7 3.5532 -2.7214 1.4780 8 6 4.8006 -3.2862 1.4658 9 1 5.5888 -2.8421 0.8759 10 6 5.0538 -4.4260 2.2166 11 7 4.0934 -4.9670 2.9359 12 14 6.7576 -5.1919 2.2061 13 1 7.5750 -4.5958 3.2931 14 1 6.6429 -6.6571 2.4196 15 1 7.4091 -4.9320 0.8972 16 6 2.8146 -1.8783 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3587 -2.4662 19 8 1.0735 0.5772 -2.7198 20 6 2.4538 -1.1063 -3.5604 21 6 2.5281 -2.4923 -3.5181 22 6 3.1364 -3.2011 -4.5461 23 6 3.6772 -2.5625 -5.6228 24 6 3.6249 -1.1620 -5.7072 25 6 4.1690 -0.4621 -6.7968 26 7 4.0969 0.8481 -6.8344 27 6 3.5246 1.5623 -5.8755 28 6 2.9679 0.9762 -4.7776 29 6 3.0020 -0.4221 -4.6701 30 1 -0.3632 -1.0276 -0.0078 31 1 -0.3633 0.5070 0.8939 32 1 -0.3633 0.5206 -0.8860 33 1 1.3057 -1.4472 1.6175 34 1 2.3543 -0.0480 2.0204 35 1 2.8455 -3.1202 2.0081 36 1 4.2703 -5.7636 3.4602 37 1 3.6717 -2.0318 -1.3950 38 1 2.1887 -2.7705 -0.7166 39 1 2.1093 -3.0245 -2.6768 40 1 3.1820 -4.2788 -4.4917 41 1 4.1458 -3.1339 -6.4105 42 1 4.6458 -1.0010 -7.6022 43 1 3.4978 2.6380 -5.9668 44 1 2.5060 1.5764 -4.0077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989796498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:36 Heat of formation + Delta-G solvation = 20.935333 kcal Electronic energy + Delta-G solvation = -27301.409594 eV Core-core repulsion = 23604.087266 eV Total energy + Delta-G solvation = -3697.322328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17785 -40.98325 -38.85519 -38.15893 -36.01732 -34.14362 -33.37050 -33.02309 -31.97806 -30.62322 -30.05806 -26.92862 -26.02756 -25.42514 -24.79958 -24.40458 -22.55898 -21.82938 -20.30917 -19.32696 -19.10652 -18.34163 -17.78134 -17.69719 -17.26382 -16.65146 -16.01124 -15.86420 -15.61951 -15.36351 -15.19895 -14.96868 -14.90767 -14.67624 -14.39754 -14.26156 -13.85149 -13.66225 -13.45417 -13.18830 -13.03039 -12.91952 -12.87427 -12.78833 -12.50268 -12.34740 -12.08654 -12.05980 -11.76028 -11.52605 -11.27052 -11.06651 -10.90009 -10.51375 -10.15618 -9.77333 -9.14085 -9.04516 -7.94662 -5.24701 -0.85949 -0.17440 0.61497 1.50884 1.51843 1.56790 1.59743 1.82132 2.09968 2.56835 3.02670 3.21831 3.36418 3.46359 3.58191 3.68729 3.75051 3.79540 3.86966 3.89968 3.94466 4.12080 4.14774 4.25114 4.34987 4.43212 4.47181 4.51392 4.67897 4.70437 4.71125 4.74578 4.82264 4.89551 5.02827 5.03359 5.09293 5.18947 5.25693 5.30169 5.34187 5.39156 5.54371 5.59235 5.74128 6.26101 6.39483 6.92218 6.97795 7.34635 8.04349 8.29725 9.27909 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.003844 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.381968 B = 7282.394958 C = 8862.179293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.077 0.923 4 C -0.123 4.123 5 C 0.165 3.835 6 H 0.061 0.939 7 N -0.720 5.720 8 C -0.244 4.244 9 H 0.076 0.924 10 C -0.064 4.064 11 N -0.964 5.964 12 Si 0.966 3.034 13 H -0.290 1.290 14 H -0.297 1.297 15 H -0.268 1.268 16 C 0.087 3.913 17 N -0.600 5.600 18 C 0.573 3.427 19 O -0.567 6.567 20 C -0.154 4.154 21 C -0.052 4.052 22 C -0.133 4.133 23 C -0.044 4.044 24 C -0.134 4.134 25 C 0.157 3.843 26 N -0.511 5.511 27 C 0.078 3.922 28 C -0.172 4.172 29 C -0.006 4.006 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.378 0.622 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.206 0.794 43 H 0.171 0.829 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 6.436 -16.527 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.096 0.904 4 C -0.162 4.162 5 C 0.054 3.946 6 H 0.079 0.921 7 N -0.359 5.359 8 C -0.376 4.376 9 H 0.094 0.906 10 C -0.257 4.257 11 N -0.614 5.614 12 Si 0.795 3.205 13 H -0.218 1.218 14 H -0.223 1.223 15 H -0.193 1.193 16 C -0.039 4.039 17 N -0.332 5.332 18 C 0.363 3.637 19 O -0.448 6.448 20 C -0.157 4.157 21 C -0.072 4.072 22 C -0.151 4.151 23 C -0.064 4.064 24 C -0.137 4.137 25 C -0.014 4.014 26 N -0.220 5.220 27 C -0.064 4.064 28 C -0.192 4.192 29 C -0.011 4.011 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.211 0.789 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.153 0.847 40 H 0.181 0.819 41 H 0.200 0.800 42 H 0.223 0.777 43 H 0.188 0.812 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.592 7.519 -17.369 19.103 hybrid contribution -0.029 -1.028 1.516 1.831 sum -2.621 6.491 -15.853 17.330 Atomic orbital electron populations 1.22065 0.93927 1.02135 1.02942 1.21653 0.95198 0.96036 0.83673 0.90450 1.22945 0.97518 0.99511 0.96226 1.21425 0.95891 0.88153 0.89099 0.92106 1.42387 1.10629 1.28821 1.54079 1.19573 0.89335 1.06275 1.22414 0.90565 1.25453 1.00826 0.99397 1.00007 1.69792 1.33277 1.23792 1.34538 0.85258 0.80140 0.77067 0.77989 1.21780 1.22318 1.19329 1.23305 0.94484 0.87483 0.98610 1.48548 1.51351 1.28707 1.04617 1.18008 0.80668 0.83218 0.81790 1.90707 1.39023 1.31334 1.83749 1.19762 1.05382 0.94794 0.95722 1.21878 0.94204 0.92211 0.98923 1.21239 0.98267 1.02271 0.93333 1.21645 0.94714 0.91627 0.98372 1.19296 1.01987 0.96058 0.96315 1.23901 0.92458 0.89528 0.95525 1.67518 1.16693 1.09271 1.28474 1.22499 0.93540 1.01277 0.89134 1.22094 1.01644 0.94440 1.00974 1.18092 0.95760 0.94012 0.93265 0.92874 0.89580 0.92858 0.90237 0.88809 0.78854 0.93937 0.91206 0.91413 0.84720 0.81880 0.80007 0.77701 0.81187 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.10 71.98 0.66 -3.30 16 2 C 0.14 3.86 3.49 45.36 0.16 4.01 16 3 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 4 C -0.12 -3.58 6.12 31.80 0.19 -3.39 16 5 C 0.17 5.87 3.70 46.38 0.17 6.04 16 6 H 0.06 2.24 8.11 -2.38 -0.02 2.22 16 7 N -0.72 -32.59 5.26 -316.37 -1.66 -34.26 16 8 C -0.24 -12.41 9.97 84.03 0.84 -11.57 16 9 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 10 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 11 N -0.96 -55.19 13.06 21.65 0.28 -54.90 16 12 Si 0.97 43.25 29.55 68.60 2.03 45.28 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 C 0.09 2.80 4.96 86.85 0.43 3.23 16 17 N -0.60 -18.48 3.07 -791.78 -2.43 -20.90 16 18 C 0.57 18.75 6.90 86.67 0.60 19.35 16 19 O -0.57 -20.89 13.86 -4.05 -0.06 -20.95 16 20 C -0.15 -4.49 5.39 -19.92 -0.11 -4.59 16 21 C -0.05 -1.28 7.98 22.58 0.18 -1.10 16 22 C -0.13 -2.41 9.92 21.99 0.22 -2.19 16 23 C -0.04 -0.68 9.78 22.36 0.22 -0.46 16 24 C -0.13 -2.87 5.74 -21.33 -0.12 -2.99 16 25 C 0.16 2.91 11.05 85.32 0.94 3.85 16 26 N -0.51 -11.91 10.30 -195.40 -2.01 -13.92 16 27 C 0.08 1.88 11.07 84.14 0.93 2.81 16 28 C -0.17 -4.83 9.22 22.32 0.21 -4.62 16 29 C -0.01 -0.15 5.76 -21.11 -0.12 -0.28 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.56 6.74 -2.39 -0.02 1.54 16 33 H 0.08 2.34 7.71 -2.38 -0.02 2.32 16 34 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.38 18.43 7.73 -92.71 -0.72 17.72 16 36 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 37 H 0.07 2.28 6.82 -2.39 -0.02 2.26 16 38 H 0.07 2.25 7.35 -2.38 -0.02 2.23 16 39 H 0.14 3.31 6.03 -2.91 -0.02 3.29 16 40 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 44 H 0.13 4.04 6.13 -2.91 -0.02 4.02 16 Total: -1.00 -67.18 359.63 2.32 -64.85 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.32 Total: 32.94 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 5.86 Total: 1.85 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -5.82 Total: -123.98 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.18 2.32 -64.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989796498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.790 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds