Wall clock time and date at job start Tue Mar 31 2020 14:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.78000 * 2 1 4 4 C 1.54323 * 110.72194 * 123.24137 * 2 1 3 5 5 N 1.47018 * 107.27131 * 140.55263 * 4 2 1 6 6 C 1.34774 * 125.65020 * 181.02206 * 5 4 2 7 7 O 1.21585 * 119.99866 * 355.33358 * 6 5 4 8 8 C 1.47558 * 120.00341 * 175.32766 * 6 5 4 9 9 C 1.38690 * 120.38155 * 42.84079 * 8 6 5 10 10 C 1.38976 * 120.53186 * 179.97438 * 9 8 6 11 11 C 1.36206 * 121.23892 * 0.02562 * 10 9 8 12 12 C 1.40718 * 120.20334 * 359.97438 * 11 10 9 13 13 N 1.33684 * 120.94561 * 180.02562 * 12 11 10 14 14 C 1.31075 * 121.33435 * 179.30045 * 13 12 11 15 15 C 1.39345 * 121.70907 * 0.61712 * 14 13 12 16 16 C 1.36671 * 119.86683 * 359.58552 * 15 14 13 17 17 C 1.40469 * 118.17044 * 359.97438 * 16 15 14 18 18 C 1.47424 * 108.70610 * 1.06145 * 5 4 2 19 19 C 1.54917 * 104.82896 * 335.86917 * 18 5 4 20 20 H 1.09004 * 110.99898 * 155.12431 * 19 18 5 21 21 N 1.46498 * 111.00516 * 278.93364 * 19 18 5 22 22 C 1.36931 * 120.00018 * 273.54915 * 21 19 18 23 23 H 1.08004 * 120.00526 * 359.97438 * 22 21 19 24 24 C 1.38822 * 120.00064 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99788 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99634 * 0.27364 * 24 22 21 27 27 H 1.48501 * 109.47408 * 269.72427 * 26 24 22 28 28 H 1.48504 * 109.47378 * 29.72401 * 26 24 22 29 29 H 1.48501 * 109.46968 * 149.72335 * 26 24 22 30 30 H 1.09002 * 109.47360 * 183.23868 * 1 2 3 31 31 H 1.09007 * 109.46824 * 303.23665 * 1 2 3 32 32 H 1.09002 * 109.47386 * 63.23625 * 1 2 3 33 33 H 1.09003 * 109.88080 * 21.13937 * 4 2 1 34 34 H 1.08991 * 110.01226 * 260.04472 * 4 2 1 35 35 H 1.08003 * 119.73825 * 359.97438 * 9 8 6 36 36 H 1.07999 * 119.37844 * 180.02562 * 10 9 8 37 37 H 1.08008 * 119.90068 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.14325 * 180.17891 * 14 13 12 39 39 H 1.08007 * 120.06343 * 179.56020 * 15 14 13 40 40 H 1.08004 * 120.91256 * 179.97438 * 16 15 14 41 41 H 1.09004 * 110.37236 * 217.03526 * 18 5 4 42 42 H 1.09000 * 110.46258 * 94.75205 * 18 5 4 43 43 H 0.97003 * 119.99945 * 93.54800 * 21 19 18 44 44 H 0.97003 * 119.99228 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 3.2444 -1.5508 0.7389 6 6 3.9923 -2.3836 1.4895 7 8 3.7719 -2.4919 2.6803 8 6 5.0783 -3.1642 0.8662 9 6 5.9274 -2.5719 -0.0567 10 6 6.9516 -3.3039 -0.6452 11 6 7.1504 -4.6154 -0.3359 12 6 6.3135 -5.2579 0.5951 13 7 6.4955 -6.5443 0.9101 14 6 5.7290 -7.1466 1.7863 15 6 4.6817 -6.4828 2.4220 16 6 4.4398 -5.1673 2.1417 17 6 5.2702 -4.5245 1.2086 18 6 3.4632 -1.2498 -0.6876 19 6 2.0788 -0.7954 -1.2139 20 1 2.1849 -0.1524 -2.0876 21 7 1.2270 -1.9487 -1.5145 22 6 1.2981 -2.5509 -2.7423 23 1 1.9819 -2.1753 -3.4892 24 6 0.4912 -3.6441 -3.0271 25 7 0.5593 -4.2225 -4.2074 26 14 -0.6969 -4.2889 -1.7379 27 1 -0.0208 -5.3239 -0.9151 28 1 -1.1347 -3.1704 -0.8646 29 1 -1.8799 -4.8849 -2.4092 30 1 -0.3634 -1.0260 0.0581 31 1 -0.3633 0.5633 0.8596 32 1 -0.3634 0.4628 -0.9176 33 1 1.3129 -1.4759 1.5775 34 1 2.3736 -0.1045 1.9995 35 1 5.7915 -1.5333 -0.3202 36 1 7.6021 -2.8239 -1.3613 37 1 7.9535 -5.1638 -0.8061 38 1 5.9095 -8.1863 2.0163 39 1 4.0621 -7.0071 3.1346 40 1 3.6324 -4.6365 2.6242 41 1 3.7959 -2.1426 -1.2171 42 1 4.1935 -0.4485 -0.8004 43 1 0.6125 -2.2859 -0.8439 44 1 -0.0048 -4.9861 -4.4064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054950296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:25 Heat of formation + Delta-G solvation = 46.890788 kcal Electronic energy + Delta-G solvation = -27929.634315 eV Core-core repulsion = 24233.437500 eV Total energy + Delta-G solvation = -3696.196815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.06645 -39.76181 -37.82445 -36.88569 -34.09127 -33.40573 -32.59984 -30.96209 -30.59906 -30.14219 -28.29328 -26.45849 -24.62479 -23.80423 -23.49821 -23.05168 -21.69564 -19.54084 -19.41369 -18.43563 -17.84090 -17.10947 -16.88884 -16.28712 -16.12422 -15.24822 -14.81427 -14.59806 -14.36897 -14.31173 -14.07227 -13.94472 -13.43939 -13.23922 -13.04138 -12.81326 -12.64693 -12.52295 -12.26293 -11.94200 -11.86544 -11.66249 -11.56269 -11.37500 -11.07967 -10.83585 -10.67235 -10.52771 -10.36296 -10.13788 -10.04422 -9.66004 -9.38536 -9.13004 -8.81924 -8.47072 -8.24452 -7.39062 -5.88031 -3.24627 0.20927 0.80188 1.79137 2.66956 2.93983 3.24958 3.28174 3.32532 3.38613 4.10862 4.23838 4.41302 4.49189 4.68365 4.73829 4.77273 4.91361 4.96051 4.98679 5.04549 5.08842 5.21709 5.30014 5.39492 5.47222 5.55090 5.69323 5.73052 5.76553 5.80464 5.89902 5.93420 5.97270 6.04580 6.10687 6.15662 6.24720 6.28430 6.31120 6.39021 6.48847 6.56588 6.61688 6.75134 7.64718 7.86056 7.86124 8.21965 8.30916 9.07776 9.80504 9.98711 11.29666 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.005066 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.066508 B = 5525.248119 C = 6398.527981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 H 0.087 0.913 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.574 3.426 7 O -0.547 6.547 8 C -0.096 4.096 9 C -0.077 4.077 10 C -0.105 4.105 11 C -0.074 4.074 12 C 0.123 3.877 13 N -0.476 5.476 14 C 0.131 3.869 15 C -0.178 4.178 16 C -0.047 4.047 17 C -0.065 4.065 18 C 0.062 3.938 19 C 0.177 3.823 20 H 0.081 0.919 21 N -0.734 5.734 22 C -0.250 4.250 23 H 0.093 0.907 24 C 0.012 3.988 25 N -0.928 5.928 26 Si 0.877 3.123 27 H -0.285 1.285 28 H -0.276 1.276 29 H -0.289 1.289 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.364 0.636 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.819 4.247 10.776 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 H 0.105 0.895 4 C -0.008 4.008 5 N -0.327 5.327 6 C 0.363 3.637 7 O -0.427 6.427 8 C -0.099 4.099 9 C -0.096 4.096 10 C -0.124 4.124 11 C -0.092 4.092 12 C 0.002 3.998 13 N -0.184 5.184 14 C -0.041 4.041 15 C -0.198 4.198 16 C -0.073 4.073 17 C -0.068 4.068 18 C -0.063 4.063 19 C 0.066 3.934 20 H 0.099 0.901 21 N -0.376 5.376 22 C -0.379 4.379 23 H 0.111 0.889 24 C -0.184 4.184 25 N -0.574 5.574 26 Si 0.707 3.293 27 H -0.211 1.211 28 H -0.202 1.202 29 H -0.215 1.215 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.177 0.823 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.198 0.802 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.473 3.697 10.697 15.420 hybrid contribution -1.612 -0.267 1.202 2.028 sum 8.861 3.429 11.899 15.227 Atomic orbital electron populations 1.21646 0.93616 1.02424 1.01567 1.22547 0.96977 0.99012 0.94975 0.89492 1.22010 0.87473 0.94467 0.96820 1.48284 1.29189 1.43109 1.12103 1.17760 0.81476 0.78787 0.85697 1.90737 1.70693 1.66622 1.14621 1.19777 0.97544 0.93489 0.99131 1.21520 0.93997 1.00644 0.93449 1.20822 0.97835 0.94120 0.99674 1.20938 0.98328 0.94430 0.95543 1.18786 0.94254 0.90036 0.96719 1.68034 1.27387 1.08705 1.14237 1.22953 0.90422 0.99984 0.90791 1.21942 0.99953 0.95497 1.02382 1.21789 0.97429 0.94536 0.93567 1.18533 0.96912 0.93368 0.97989 1.23606 1.01194 1.01357 0.80171 1.21334 0.88198 0.89254 0.94655 0.90086 1.42722 1.45746 1.34137 1.15003 1.19020 1.19747 1.09294 0.89878 0.88929 1.24633 0.99403 0.98109 0.96284 1.69686 1.42653 1.24452 1.20636 0.86686 0.81735 0.79065 0.81780 1.21134 1.20243 1.21527 0.92150 0.93223 0.91590 0.91644 0.91677 0.84589 0.84492 0.84361 0.82328 0.84438 0.83353 0.89219 0.91909 0.80200 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.71 37.16 0.32 -1.54 16 2 C -0.12 -1.56 3.42 -88.79 -0.30 -1.86 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.11 1.69 6.46 -3.07 -0.02 1.67 16 5 N -0.60 -9.60 3.33 -171.74 -0.57 -10.17 16 6 C 0.57 10.01 7.03 -12.46 -0.09 9.92 16 7 O -0.55 -10.58 15.26 5.29 0.08 -10.50 16 8 C -0.10 -1.56 5.38 -104.66 -0.56 -2.12 16 9 C -0.08 -1.03 7.99 -39.14 -0.31 -1.35 16 10 C -0.10 -1.24 9.92 -40.04 -0.40 -1.63 16 11 C -0.07 -0.97 9.96 -39.38 -0.39 -1.37 16 12 C 0.12 1.94 6.60 -84.87 -0.56 1.38 16 13 N -0.48 -7.23 10.34 -10.98 -0.11 -7.34 16 14 C 0.13 1.68 11.15 -17.46 -0.19 1.49 16 15 C -0.18 -2.32 10.03 -39.74 -0.40 -2.72 16 16 C -0.05 -0.76 9.22 -39.31 -0.36 -1.12 16 17 C -0.07 -1.09 5.76 -106.53 -0.61 -1.71 16 18 C 0.06 0.95 4.97 -2.52 -0.01 0.94 16 19 C 0.18 2.95 3.44 -65.78 -0.23 2.72 16 20 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 21 N -0.73 -15.81 4.54 -51.34 -0.23 -16.05 16 22 C -0.25 -6.55 10.47 -15.06 -0.16 -6.70 16 23 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 24 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 25 N -0.93 -28.22 13.97 55.49 0.78 -27.45 16 26 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 27 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H 0.06 0.98 6.35 -51.93 -0.33 0.65 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.05 7.76 -51.93 -0.40 0.64 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.14 1.53 6.10 -52.48 -0.32 1.21 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.15 2.48 6.06 -52.48 -0.32 2.16 16 41 H 0.09 1.58 6.85 -51.93 -0.36 1.23 16 42 H 0.06 0.76 7.36 -51.93 -0.38 0.38 16 43 H 0.36 8.02 3.94 -40.82 -0.16 7.86 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -33.25 355.64 -9.46 -42.71 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.67 Total: 10.16 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -4.37 Total: -3.75 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.14 Total: -61.00 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.25 -9.46 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054950296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.603 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds