Wall clock time and date at job start Tue Mar 31 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.78000 * 2 1 4 4 C 1.54323 * 110.72194 * 123.24137 * 2 1 3 5 5 N 1.47018 * 107.27131 * 140.55263 * 4 2 1 6 6 C 1.34774 * 125.65020 * 181.02206 * 5 4 2 7 7 O 1.21585 * 119.99866 * 355.33358 * 6 5 4 8 8 C 1.47558 * 120.00341 * 175.32766 * 6 5 4 9 9 C 1.38690 * 120.38155 * 42.84079 * 8 6 5 10 10 C 1.38976 * 120.53186 * 179.97438 * 9 8 6 11 11 C 1.36206 * 121.23892 * 0.02562 * 10 9 8 12 12 C 1.40718 * 120.20334 * 359.97438 * 11 10 9 13 13 N 1.33684 * 120.94561 * 180.02562 * 12 11 10 14 14 C 1.31075 * 121.33435 * 179.30045 * 13 12 11 15 15 C 1.39345 * 121.70907 * 0.61712 * 14 13 12 16 16 C 1.36671 * 119.86683 * 359.58552 * 15 14 13 17 17 C 1.40469 * 118.17044 * 359.97438 * 16 15 14 18 18 C 1.47424 * 108.70610 * 1.06145 * 5 4 2 19 19 C 1.54917 * 104.82896 * 335.86917 * 18 5 4 20 20 H 1.09004 * 110.99898 * 155.12431 * 19 18 5 21 21 N 1.46498 * 111.00516 * 278.93364 * 19 18 5 22 22 C 1.36931 * 120.00018 * 273.54915 * 21 19 18 23 23 H 1.08004 * 120.00526 * 359.97438 * 22 21 19 24 24 C 1.38822 * 120.00064 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99788 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99634 * 0.27364 * 24 22 21 27 27 H 1.48501 * 109.47408 * 269.72427 * 26 24 22 28 28 H 1.48504 * 109.47378 * 29.72401 * 26 24 22 29 29 H 1.48501 * 109.46968 * 149.72335 * 26 24 22 30 30 H 1.09002 * 109.47360 * 183.23868 * 1 2 3 31 31 H 1.09007 * 109.46824 * 303.23665 * 1 2 3 32 32 H 1.09002 * 109.47386 * 63.23625 * 1 2 3 33 33 H 1.09003 * 109.88080 * 21.13937 * 4 2 1 34 34 H 1.08991 * 110.01226 * 260.04472 * 4 2 1 35 35 H 1.08003 * 119.73825 * 359.97438 * 9 8 6 36 36 H 1.07999 * 119.37844 * 180.02562 * 10 9 8 37 37 H 1.08008 * 119.90068 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.14325 * 180.17891 * 14 13 12 39 39 H 1.08007 * 120.06343 * 179.56020 * 15 14 13 40 40 H 1.08004 * 120.91256 * 179.97438 * 16 15 14 41 41 H 1.09004 * 110.37236 * 217.03526 * 18 5 4 42 42 H 1.09000 * 110.46258 * 94.75205 * 18 5 4 43 43 H 0.97003 * 119.99945 * 93.54800 * 21 19 18 44 44 H 0.97003 * 119.99228 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 3.2444 -1.5508 0.7389 6 6 3.9923 -2.3836 1.4895 7 8 3.7719 -2.4919 2.6803 8 6 5.0783 -3.1642 0.8662 9 6 5.9274 -2.5719 -0.0567 10 6 6.9516 -3.3039 -0.6452 11 6 7.1504 -4.6154 -0.3359 12 6 6.3135 -5.2579 0.5951 13 7 6.4955 -6.5443 0.9101 14 6 5.7290 -7.1466 1.7863 15 6 4.6817 -6.4828 2.4220 16 6 4.4398 -5.1673 2.1417 17 6 5.2702 -4.5245 1.2086 18 6 3.4632 -1.2498 -0.6876 19 6 2.0788 -0.7954 -1.2139 20 1 2.1849 -0.1524 -2.0876 21 7 1.2270 -1.9487 -1.5145 22 6 1.2981 -2.5509 -2.7423 23 1 1.9819 -2.1753 -3.4892 24 6 0.4912 -3.6441 -3.0271 25 7 0.5593 -4.2225 -4.2074 26 14 -0.6969 -4.2889 -1.7379 27 1 -0.0208 -5.3239 -0.9151 28 1 -1.1347 -3.1704 -0.8646 29 1 -1.8799 -4.8849 -2.4092 30 1 -0.3634 -1.0260 0.0581 31 1 -0.3633 0.5633 0.8596 32 1 -0.3634 0.4628 -0.9176 33 1 1.3129 -1.4759 1.5775 34 1 2.3736 -0.1045 1.9995 35 1 5.7915 -1.5333 -0.3202 36 1 7.6021 -2.8239 -1.3613 37 1 7.9535 -5.1638 -0.8061 38 1 5.9095 -8.1863 2.0163 39 1 4.0621 -7.0071 3.1346 40 1 3.6324 -4.6365 2.6242 41 1 3.7959 -2.1426 -1.2171 42 1 4.1935 -0.4485 -0.8004 43 1 0.6125 -2.2859 -0.8439 44 1 -0.0048 -4.9861 -4.4064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054950296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:24 Heat of formation + Delta-G solvation = 25.508726 kcal Electronic energy + Delta-G solvation = -27930.561511 eV Core-core repulsion = 24233.437500 eV Total energy + Delta-G solvation = -3697.124011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18074 -40.97856 -39.13679 -37.94789 -35.80710 -34.52014 -34.03755 -32.71898 -31.63376 -31.23778 -29.74834 -27.61000 -25.85312 -25.37671 -24.56563 -24.34458 -22.99505 -20.88166 -20.62170 -19.85266 -19.36865 -18.22361 -17.99715 -17.58823 -17.37084 -16.50216 -16.40252 -15.93895 -15.72504 -15.53519 -15.30352 -15.12639 -14.78070 -14.54333 -14.24689 -14.18290 -13.88803 -13.85584 -13.59856 -13.23151 -13.13940 -12.99704 -12.94363 -12.74013 -12.40288 -12.28042 -12.13555 -11.96199 -11.67216 -11.62076 -11.44013 -11.31317 -11.05455 -10.52088 -9.88621 -9.79803 -9.38310 -9.21423 -8.04279 -5.34823 -0.86973 -0.24767 0.64222 1.28383 1.31612 1.37293 1.50633 1.80347 2.07830 2.42921 3.02045 3.22770 3.26050 3.28936 3.53114 3.61015 3.72071 3.74318 3.80780 3.83636 3.94592 4.00924 4.11779 4.33696 4.35524 4.39964 4.58572 4.59672 4.67416 4.71061 4.72546 4.80214 4.91247 4.94046 4.95607 5.02583 5.15152 5.17086 5.22582 5.25441 5.34254 5.45954 5.47472 5.74708 5.78914 6.20769 6.37334 6.79034 6.94261 7.06658 7.83917 7.99563 9.16896 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.005066 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.066508 B = 5525.248119 C = 6398.527981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.128 0.872 4 C 0.111 3.889 5 N -0.597 5.597 6 C 0.570 3.430 7 O -0.577 6.577 8 C -0.131 4.131 9 C -0.068 4.068 10 C -0.100 4.100 11 C -0.079 4.079 12 C 0.098 3.902 13 N -0.492 5.492 14 C 0.128 3.872 15 C -0.168 4.168 16 C -0.081 4.081 17 C -0.090 4.090 18 C 0.070 3.930 19 C 0.162 3.838 20 H 0.093 0.907 21 N -0.739 5.739 22 C -0.214 4.214 23 H 0.073 0.927 24 C -0.056 4.056 25 N -0.978 5.978 26 Si 0.930 3.070 27 H -0.297 1.297 28 H -0.251 1.251 29 H -0.296 1.296 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.159 0.841 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.200 0.800 39 H 0.169 0.831 40 H 0.131 0.869 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.361 0.639 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.972 5.914 11.580 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 H 0.146 0.854 4 C -0.011 4.011 5 N -0.328 5.328 6 C 0.360 3.640 7 O -0.459 6.459 8 C -0.135 4.135 9 C -0.086 4.086 10 C -0.119 4.119 11 C -0.097 4.097 12 C -0.023 4.023 13 N -0.200 5.200 14 C -0.044 4.044 15 C -0.188 4.188 16 C -0.107 4.107 17 C -0.093 4.093 18 C -0.054 4.054 19 C 0.053 3.947 20 H 0.110 0.890 21 N -0.382 5.382 22 C -0.345 4.345 23 H 0.091 0.909 24 C -0.248 4.248 25 N -0.629 5.629 26 Si 0.760 3.240 27 H -0.224 1.224 28 H -0.176 1.176 29 H -0.222 1.222 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.176 0.824 36 H 0.196 0.804 37 H 0.177 0.823 38 H 0.216 0.784 39 H 0.186 0.814 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.195 0.805 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.637 5.438 11.535 17.264 hybrid contribution -1.866 -0.727 0.971 2.226 sum 9.771 4.710 12.506 16.555 Atomic orbital electron populations 1.21639 0.93759 1.00995 1.02815 1.22543 0.96767 1.00173 0.92173 0.85442 1.22143 0.86682 0.94385 0.97936 1.48372 1.29240 1.42937 1.12248 1.18019 0.81819 0.78715 0.85467 1.90701 1.71768 1.67506 1.15929 1.19870 0.98685 0.93706 1.01203 1.21879 0.93211 1.01672 0.91881 1.21273 0.97515 0.93584 0.99524 1.21319 0.98330 0.95233 0.94867 1.19181 0.94819 0.90559 0.97732 1.68091 1.28167 1.08632 1.15109 1.23629 0.89555 1.01540 0.89704 1.22319 0.99916 0.94475 1.02041 1.21826 0.97942 0.96018 0.94899 1.18801 0.97694 0.94085 0.98692 1.23528 1.01033 1.01534 0.79329 1.21697 0.88324 0.88080 0.96640 0.88963 1.42777 1.46744 1.35386 1.13271 1.19051 1.16931 1.07765 0.90748 0.90912 1.25248 1.02081 0.99483 0.97946 1.69829 1.44594 1.25661 1.22841 0.85796 0.79635 0.78801 0.79815 1.22443 1.17557 1.22243 0.95054 0.90460 0.91676 0.93570 0.89848 0.82363 0.80415 0.82299 0.78374 0.81392 0.85123 0.91789 0.87503 0.80465 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.71 71.98 0.63 -2.71 16 2 C -0.10 -2.30 3.42 -9.61 -0.03 -2.33 16 3 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.11 3.03 6.46 86.73 0.56 3.59 16 5 N -0.60 -18.43 3.33 -815.52 -2.71 -21.14 16 6 C 0.57 19.92 7.03 86.70 0.61 20.53 16 7 O -0.58 -22.90 15.26 -3.98 -0.06 -22.96 16 8 C -0.13 -4.27 5.38 -19.89 -0.11 -4.38 16 9 C -0.07 -1.70 7.99 22.55 0.18 -1.52 16 10 C -0.10 -2.12 9.92 21.97 0.22 -1.90 16 11 C -0.08 -1.98 9.96 22.40 0.22 -1.76 16 12 C 0.10 3.07 6.60 40.28 0.27 3.34 16 13 N -0.49 -14.64 10.34 -188.67 -1.95 -16.59 16 14 C 0.13 3.14 11.15 85.07 0.95 4.09 16 15 C -0.17 -4.34 10.03 22.17 0.22 -4.11 16 16 C -0.08 -2.68 9.22 22.45 0.21 -2.48 16 17 C -0.09 -3.09 5.76 -21.10 -0.12 -3.21 16 18 C 0.07 1.98 4.97 86.86 0.43 2.42 16 19 C 0.16 4.99 3.44 46.39 0.16 5.15 16 20 H 0.09 2.69 8.13 -2.39 -0.02 2.68 16 21 N -0.74 -31.20 4.54 -316.35 -1.44 -32.63 16 22 C -0.21 -11.24 10.47 84.04 0.88 -10.36 16 23 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 24 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 25 N -0.98 -61.31 13.97 21.65 0.30 -61.01 16 26 Si 0.93 45.80 27.74 68.60 1.90 47.70 16 27 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 28 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 29 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 30 H 0.03 0.95 6.35 -2.39 -0.02 0.94 16 31 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.44 7.76 -2.39 -0.02 1.42 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.16 3.07 6.10 -2.91 -0.02 3.05 16 36 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 38 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.13 4.68 6.06 -2.91 -0.02 4.66 16 41 H 0.06 2.18 6.85 -2.39 -0.02 2.16 16 42 H 0.11 2.11 7.36 -2.39 -0.02 2.10 16 43 H 0.36 15.65 3.94 -92.71 -0.37 15.29 16 44 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -76.59 355.64 2.39 -74.20 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.61 Total: 30.81 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.74 Total: 1.62 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.80 Total: -131.37 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.06 Total: -22.96 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Total: -76.59 2.39 -74.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054950296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.707 kcal (2) G-P(sol) polarization free energy of solvation -76.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds