Wall clock time and date at job start Tue Mar 31 2020 14:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 110.88711 * 2 1 4 4 C 1.54910 * 111.03431 * 236.10604 * 2 1 3 5 5 N 1.47427 * 104.83167 * 204.90097 * 4 2 1 6 6 C 1.34772 * 125.64857 * 204.17399 * 5 4 2 7 7 O 1.21588 * 120.00354 * 355.09837 * 6 5 4 8 8 C 1.47555 * 120.00168 * 175.10346 * 6 5 4 9 9 C 1.38704 * 120.38516 * 48.75349 * 8 6 5 10 10 C 1.38972 * 120.53481 * 179.69919 * 9 8 6 11 11 C 1.36204 * 121.23850 * 0.58765 * 10 9 8 12 12 C 1.40717 * 120.20134 * 359.71660 * 11 10 9 13 13 N 1.33684 * 120.93756 * 180.02562 * 12 11 10 14 14 C 1.31060 * 121.34174 * 180.02562 * 13 12 11 15 15 C 1.39332 * 121.70720 * 359.95075 * 14 13 12 16 16 C 1.36679 * 119.87183 * 0.02562 * 15 14 13 17 17 C 1.40471 * 118.16931 * 0.02562 * 16 15 14 18 18 C 1.47023 * 108.70260 * 24.12492 * 5 4 2 19 19 C 1.54325 * 107.27321 * 358.94269 * 18 5 4 20 20 H 1.08993 * 110.87335 * 96.23702 * 19 18 5 21 21 N 1.46492 * 110.72010 * 219.44515 * 19 18 5 22 22 C 1.36935 * 120.00263 * 268.51749 * 21 19 18 23 23 H 1.08001 * 119.99819 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00435 * 180.02562 * 22 21 19 25 25 N 1.31614 * 119.99951 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99834 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47062 * 89.99466 * 26 24 22 28 28 H 1.48489 * 109.46921 * 210.00027 * 26 24 22 29 29 H 1.48509 * 109.46922 * 329.99961 * 26 24 22 30 30 H 1.09007 * 109.46997 * 299.28908 * 1 2 3 31 31 H 1.09000 * 109.47859 * 59.29131 * 1 2 3 32 32 H 1.09005 * 109.47350 * 179.29665 * 1 2 3 33 33 H 1.08999 * 110.36620 * 323.73094 * 4 2 1 34 34 H 1.08995 * 110.37168 * 86.05680 * 4 2 1 35 35 H 1.07992 * 119.72912 * 359.97438 * 9 8 6 36 36 H 1.08001 * 119.37884 * 180.26177 * 10 9 8 37 37 H 1.07998 * 119.90383 * 179.70293 * 11 10 9 38 38 H 1.08004 * 119.14395 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.06898 * 179.97438 * 15 14 13 40 40 H 1.08003 * 120.91726 * 180.02562 * 16 15 14 41 41 H 1.08998 * 109.88156 * 239.52595 * 18 5 4 42 42 H 1.08998 * 109.88415 * 118.36285 * 18 5 4 43 43 H 0.97008 * 120.00110 * 88.51995 * 21 19 18 44 44 H 0.97004 * 119.99843 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0860 -0.8063 -1.2002 5 7 3.4279 -1.2421 -0.7728 6 6 4.4493 -1.5586 -1.5932 7 8 4.2777 -1.5821 -2.7966 8 6 5.7759 -1.8767 -1.0309 9 6 5.8966 -2.7807 0.0141 10 6 7.1451 -3.0873 0.5419 11 6 8.2780 -2.5045 0.0603 12 6 8.2032 -1.5767 -0.9950 13 7 9.3057 -0.9963 -1.4793 14 6 9.2452 -0.1308 -2.4616 15 6 8.0334 0.2263 -3.0493 16 6 6.8688 -0.3313 -2.6008 17 6 6.9398 -1.2575 -1.5471 18 6 3.4678 -1.2731 0.6966 19 6 2.0861 -0.8076 1.2024 20 1 1.4455 -1.6613 1.4229 21 7 2.2279 0.0499 2.3816 22 6 2.1991 -0.4998 3.6355 23 1 2.0723 -1.5656 3.7550 24 6 2.3329 0.3129 4.7529 25 7 2.3057 -0.2156 5.9580 26 14 2.5514 2.1565 4.5463 27 1 1.2203 2.8146 4.5344 28 1 3.3569 2.6890 5.6744 29 1 3.2510 2.4315 3.2654 30 1 -0.3633 0.5028 0.8964 31 1 -0.3635 0.5248 -0.8835 32 1 -0.3634 -1.0276 -0.0126 33 1 1.4531 -1.6704 -1.4024 34 1 2.1566 -0.1717 -2.0835 35 1 5.0136 -3.2535 0.4179 36 1 7.2178 -3.7971 1.3527 37 1 9.2367 -2.7550 0.4898 38 1 10.1583 0.3170 -2.8251 39 1 8.0141 0.9428 -3.8571 40 1 5.9202 -0.0671 -3.0444 41 1 4.2425 -0.5983 1.0607 42 1 3.6659 -2.2882 1.0407 43 1 2.3421 1.0073 2.2743 44 1 2.3995 0.3522 6.7388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054950298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:30 Heat of formation + Delta-G solvation = 43.453461 kcal Electronic energy + Delta-G solvation = -27296.667821 eV Core-core repulsion = 23600.321952 eV Total energy + Delta-G solvation = -3696.345869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18403 -39.81128 -37.81645 -36.99206 -34.30398 -33.56958 -32.67804 -31.16401 -30.73355 -30.26990 -28.05366 -26.56009 -24.72756 -23.94544 -23.65486 -22.96723 -21.31228 -20.29132 -19.49802 -18.46127 -17.65407 -17.30298 -17.13281 -16.46000 -15.97616 -15.42713 -14.94142 -14.71263 -14.44592 -14.34176 -14.16002 -13.65379 -13.59905 -13.35382 -13.27302 -12.97543 -12.65684 -12.59711 -12.45121 -12.04212 -11.88133 -11.75184 -11.61910 -11.38432 -11.20144 -10.87186 -10.72552 -10.67844 -10.45705 -10.20353 -10.09177 -9.71944 -9.53688 -9.10127 -8.95239 -8.58069 -8.36402 -7.47424 -5.91010 -3.29259 0.08674 0.66599 1.65459 2.54397 2.81103 3.08273 3.28125 3.30896 3.37439 3.96312 4.10405 4.29735 4.46555 4.57331 4.61006 4.68754 4.80401 4.85231 4.93666 4.96681 4.98379 5.15932 5.26729 5.36152 5.46090 5.57429 5.59593 5.62938 5.66011 5.70317 5.76708 5.81977 5.90045 5.99048 6.04138 6.13236 6.16214 6.22206 6.27757 6.30961 6.38352 6.42083 6.62383 6.65805 7.53319 7.72171 7.82258 8.09073 8.27419 9.03524 9.76022 9.93677 11.26480 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.003971 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.101050 B = 7049.384381 C = 8078.466759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.605 5.605 6 C 0.574 3.426 7 O -0.544 6.544 8 C -0.101 4.101 9 C -0.074 4.074 10 C -0.101 4.101 11 C -0.075 4.075 12 C 0.122 3.878 13 N -0.474 5.474 14 C 0.130 3.870 15 C -0.177 4.177 16 C -0.049 4.049 17 C -0.067 4.067 18 C 0.068 3.932 19 C 0.183 3.817 20 H 0.080 0.920 21 N -0.734 5.734 22 C -0.255 4.255 23 H 0.093 0.907 24 C 0.013 3.987 25 N -0.927 5.927 26 Si 0.881 3.119 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.364 0.636 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.486 -1.823 -16.280 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 H 0.099 0.901 4 C -0.008 4.008 5 N -0.337 5.337 6 C 0.362 3.638 7 O -0.423 6.423 8 C -0.105 4.105 9 C -0.092 4.092 10 C -0.121 4.121 11 C -0.094 4.094 12 C 0.001 3.999 13 N -0.182 5.182 14 C -0.043 4.043 15 C -0.197 4.197 16 C -0.075 4.075 17 C -0.070 4.070 18 C -0.057 4.057 19 C 0.071 3.929 20 H 0.098 0.902 21 N -0.375 5.375 22 C -0.384 4.384 23 H 0.111 0.889 24 C -0.184 4.184 25 N -0.574 5.574 26 Si 0.711 3.289 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.203 1.203 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.177 0.823 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.198 0.802 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.184 -2.298 -16.244 18.334 hybrid contribution -0.500 1.595 -0.270 1.693 sum 7.684 -0.703 -16.514 18.228 Atomic orbital electron populations 1.21615 0.93474 1.02106 1.01977 1.22709 0.96685 0.99665 0.94837 0.90063 1.22301 0.82432 0.98353 0.97700 1.48474 1.11821 1.65201 1.08236 1.17792 0.83182 0.77146 0.85663 1.90766 1.83858 1.53440 1.14212 1.19807 0.92419 1.00170 0.98073 1.21567 0.98780 0.95860 0.93037 1.20887 0.91560 0.99790 0.99859 1.20959 0.99652 0.94465 0.94337 1.18798 0.87814 0.96879 0.96394 1.68039 1.30107 1.08642 1.11414 1.22957 0.97782 0.92523 0.91046 1.21933 0.93369 1.02134 1.02238 1.21677 0.99989 0.92649 0.93204 1.18527 0.93084 0.98055 0.97312 1.23474 1.03159 1.01854 0.77243 1.21230 0.91728 0.93906 0.86048 0.90240 1.42714 1.87897 1.05065 1.01865 1.19057 1.43510 0.94666 0.81199 0.88933 1.24658 1.01295 0.97376 0.95063 1.69689 1.56091 1.34584 0.97016 0.86616 0.78003 0.87164 0.77108 1.20874 1.21595 1.20341 0.91377 0.93031 0.92422 0.91097 0.90762 0.84337 0.84260 0.84283 0.82305 0.84407 0.83727 0.90720 0.91422 0.80247 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.29 37.15 0.35 -1.31 16 2 C -0.12 -1.66 3.26 -88.47 -0.29 -1.94 16 3 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 4 C 0.11 1.53 6.36 -2.53 -0.02 1.51 16 5 N -0.61 -9.00 3.33 -171.74 -0.57 -9.57 16 6 C 0.57 9.06 6.81 -12.46 -0.08 8.97 16 7 O -0.54 -9.65 15.67 5.29 0.08 -9.56 16 8 C -0.10 -1.48 5.41 -104.65 -0.57 -2.05 16 9 C -0.07 -0.95 8.51 -39.14 -0.33 -1.28 16 10 C -0.10 -1.14 9.92 -40.04 -0.40 -1.54 16 11 C -0.08 -0.91 9.96 -39.38 -0.39 -1.30 16 12 C 0.12 1.71 6.60 -84.87 -0.56 1.15 16 13 N -0.47 -6.33 10.34 -10.99 -0.11 -6.44 16 14 C 0.13 1.39 11.15 -17.47 -0.19 1.20 16 15 C -0.18 -1.87 10.03 -39.74 -0.40 -2.27 16 16 C -0.05 -0.66 9.26 -39.30 -0.36 -1.02 16 17 C -0.07 -0.98 5.76 -106.53 -0.61 -1.59 16 18 C 0.07 1.07 5.43 -3.06 -0.02 1.06 16 19 C 0.18 3.07 3.09 -66.10 -0.20 2.87 16 20 H 0.08 1.36 7.98 -51.93 -0.41 0.94 16 21 N -0.73 -15.57 4.95 -51.66 -0.26 -15.82 16 22 C -0.25 -6.56 10.44 -15.06 -0.16 -6.72 16 23 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 24 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 25 N -0.93 -27.61 13.97 55.49 0.78 -26.83 16 26 Si 0.88 20.95 27.74 -169.99 -4.71 16.23 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 30 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 34 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.14 1.62 6.06 -52.49 -0.32 1.30 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.15 1.98 6.31 -52.48 -0.33 1.65 16 41 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 42 H 0.07 1.00 6.07 -51.93 -0.32 0.68 16 43 H 0.36 7.75 5.62 -40.82 -0.23 7.52 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -31.96 360.73 -9.53 -41.48 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.83 Total: 9.10 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -4.34 Total: -4.02 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.17 Total: -58.67 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.96 -9.53 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054950298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.938 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds