Wall clock time and date at job start Tue Mar 31 2020 14:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.88640 * 2 1 4 4 C 1.54908 * 111.00600 * 236.12085 * 2 1 3 5 5 N 1.47430 * 104.83131 * 204.87675 * 4 2 1 6 6 C 1.34774 * 125.64520 * 204.08938 * 5 4 2 7 7 O 1.21588 * 120.00295 * 5.14531 * 6 5 4 8 8 C 1.47553 * 119.99756 * 185.14183 * 6 5 4 9 9 C 1.38702 * 120.38535 * 46.67562 * 8 6 5 10 10 C 1.38973 * 120.53010 * 180.02562 * 9 8 6 11 11 C 1.36200 * 121.24283 * 359.97438 * 10 9 8 12 12 C 1.40715 * 120.20407 * 0.02792 * 11 10 9 13 13 N 1.33690 * 120.95245 * 179.97438 * 12 11 10 14 14 C 1.31060 * 121.34070 * 180.02562 * 13 12 11 15 15 C 1.39344 * 121.71478 * 359.97438 * 14 13 12 16 16 C 1.36674 * 119.86105 * 0.25097 * 15 14 13 17 17 C 1.40474 * 118.17035 * 359.51710 * 16 15 14 18 18 C 1.47017 * 108.70121 * 24.35901 * 5 4 2 19 19 C 1.54340 * 107.26889 * 358.58125 * 18 5 4 20 20 H 1.08997 * 111.00148 * 219.60388 * 19 18 5 21 21 N 1.46503 * 110.51104 * 96.45302 * 19 18 5 22 22 C 1.36936 * 119.99722 * 91.50783 * 21 19 18 23 23 H 1.07995 * 120.00241 * 359.97438 * 22 21 19 24 24 C 1.38818 * 119.99970 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99479 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00296 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47214 * 59.99381 * 26 24 22 28 28 H 1.48497 * 109.47225 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47093 * 299.99912 * 26 24 22 30 30 H 1.08996 * 109.46608 * 182.42441 * 1 2 3 31 31 H 1.08994 * 109.47543 * 302.42658 * 1 2 3 32 32 H 1.08999 * 109.46674 * 62.42693 * 1 2 3 33 33 H 1.08996 * 110.36800 * 86.04017 * 4 2 1 34 34 H 1.09003 * 110.46130 * 323.76236 * 4 2 1 35 35 H 1.07994 * 119.73120 * 0.04883 * 9 8 6 36 36 H 1.07997 * 119.37252 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.89778 * 179.97438 * 11 10 9 38 38 H 1.07999 * 119.14676 * 180.02562 * 14 13 12 39 39 H 1.07996 * 120.07269 * 179.97438 * 15 14 13 40 40 H 1.08002 * 120.91602 * 179.72568 * 16 15 14 41 41 H 1.08999 * 109.88488 * 118.13127 * 18 5 4 42 42 H 1.08999 * 109.87982 * 239.29457 * 18 5 4 43 43 H 0.96997 * 120.00098 * 271.49824 * 21 19 18 44 44 H 0.96997 * 119.99556 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4276 -1.2419 -0.7741 6 6 4.4480 -1.5598 -1.5952 7 8 4.3316 -1.4092 -2.7961 8 6 5.7065 -2.0905 -1.0368 9 6 5.6814 -3.0999 -0.0859 10 6 6.8649 -3.6016 0.4425 11 6 8.0756 -3.1210 0.0449 12 6 8.1495 -2.0970 -0.9174 13 7 9.3299 -1.6138 -1.3181 14 6 9.4076 -0.6599 -2.2134 15 6 8.2684 -0.1033 -2.7915 16 6 7.0305 -0.5494 -2.4219 17 6 6.9536 -1.5755 -1.4657 18 6 3.4667 -1.2785 0.6951 19 6 2.0870 -0.8078 1.2020 20 1 2.1900 -0.1706 2.0803 21 7 1.2284 -1.9578 1.4960 22 6 1.2080 -2.4925 2.7565 23 1 1.8252 -2.0666 3.5337 24 6 0.3941 -3.5819 3.0353 25 7 -0.3584 -4.1006 2.0881 26 14 0.3668 -4.3117 4.7545 27 1 -0.0737 -3.2771 5.7246 28 1 -0.5770 -5.4576 4.7909 29 1 1.7291 -4.7802 5.1152 30 1 -0.3632 -1.0267 0.0435 31 1 -0.3634 0.5510 0.8674 32 1 -0.3632 0.4757 -0.9110 33 1 2.1555 -0.1714 -2.0839 34 1 1.4530 -1.6702 -1.4045 35 1 4.7347 -3.4994 0.2463 36 1 6.8236 -4.3879 1.1816 37 1 8.9818 -3.5265 0.4702 38 1 10.3798 -0.2963 -2.5116 39 1 8.3633 0.6821 -3.5266 40 1 6.1362 -0.1271 -2.8557 41 1 3.6617 -2.2954 1.0356 42 1 4.2431 -0.6072 1.0621 43 1 0.6743 -2.3405 0.7978 44 1 -0.9274 -4.8615 2.2830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054950299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:32 Heat of formation + Delta-G solvation = 25.266792 kcal Electronic energy + Delta-G solvation = -27385.426491 eV Core-core repulsion = 23688.291989 eV Total energy + Delta-G solvation = -3697.134502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17168 -40.94613 -39.08995 -37.94965 -35.73078 -34.51906 -33.94123 -32.29507 -31.62352 -31.22358 -29.38096 -27.61178 -25.88271 -25.47282 -24.57439 -24.36439 -23.08248 -20.76316 -20.55117 -19.54184 -19.25385 -18.26535 -18.06810 -17.51457 -17.11691 -16.41155 -16.33957 -15.90793 -15.64486 -15.50168 -15.33618 -15.09365 -14.71580 -14.53963 -14.40351 -14.19848 -13.77267 -13.61558 -13.34364 -13.14517 -13.00191 -12.86174 -12.77441 -12.74639 -12.36311 -12.31669 -12.16698 -11.95833 -11.63418 -11.46793 -11.43403 -11.28297 -10.93730 -10.50458 -9.86362 -9.75307 -9.33978 -9.00995 -7.90577 -5.19045 -0.86876 -0.24410 0.65582 1.51026 1.52385 1.53174 1.59148 1.82497 1.99859 2.59208 3.02500 3.23074 3.27407 3.40640 3.59903 3.73494 3.74122 3.82185 3.86984 3.91830 3.97790 4.06828 4.10139 4.34992 4.40233 4.42429 4.57650 4.61548 4.69340 4.71917 4.73571 4.85695 4.94204 4.97291 4.99648 5.04683 5.15020 5.20826 5.25563 5.28344 5.32231 5.47432 5.56295 5.61032 5.74403 6.30120 6.39012 6.82822 6.91711 7.38400 8.11120 8.34959 9.32166 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.003677 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.654705 B = 7612.151664 C = 8995.469079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 H 0.107 0.893 4 C 0.113 3.887 5 N -0.599 5.599 6 C 0.571 3.429 7 O -0.574 6.574 8 C -0.123 4.123 9 C -0.074 4.074 10 C -0.102 4.102 11 C -0.070 4.070 12 C 0.102 3.898 13 N -0.491 5.491 14 C 0.132 3.868 15 C -0.160 4.160 16 C -0.075 4.075 17 C -0.083 4.083 18 C 0.078 3.922 19 C 0.164 3.836 20 H 0.084 0.916 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.082 0.918 24 C -0.069 4.069 25 N -0.968 5.968 26 Si 0.966 3.034 27 H -0.279 1.279 28 H -0.304 1.304 29 H -0.277 1.277 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.131 0.869 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.201 0.799 39 H 0.173 0.827 40 H 0.133 0.867 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.376 0.624 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.712 9.305 -5.985 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.120 4.120 3 H 0.125 0.875 4 C -0.009 4.009 5 N -0.329 5.329 6 C 0.361 3.639 7 O -0.456 6.456 8 C -0.127 4.127 9 C -0.093 4.093 10 C -0.121 4.121 11 C -0.089 4.089 12 C -0.019 4.019 13 N -0.199 5.199 14 C -0.041 4.041 15 C -0.179 4.179 16 C -0.101 4.101 17 C -0.086 4.086 18 C -0.047 4.047 19 C 0.054 3.946 20 H 0.102 0.898 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.100 0.900 24 C -0.261 4.261 25 N -0.618 5.618 26 Si 0.795 3.205 27 H -0.205 1.205 28 H -0.230 1.230 29 H -0.203 1.203 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.183 0.817 37 H 0.179 0.821 38 H 0.217 0.783 39 H 0.191 0.809 40 H 0.151 0.849 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.209 0.791 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.418 8.900 -6.003 20.461 hybrid contribution -1.613 -0.705 0.147 1.766 sum 15.805 8.195 -5.856 18.742 Atomic orbital electron populations 1.21480 0.93277 1.01697 1.01886 1.22606 0.96903 0.99227 0.93262 0.87471 1.22313 0.81971 0.98130 0.98448 1.48428 1.11889 1.64562 1.08055 1.18084 0.83147 0.77365 0.85350 1.90719 1.83080 1.56254 1.15559 1.19783 0.91848 1.00716 1.00343 1.21668 1.00314 0.94411 0.92883 1.21124 0.90564 1.00397 1.00058 1.21249 0.99593 0.93699 0.94330 1.19069 0.87817 0.97379 0.97588 1.68109 1.25730 1.12261 1.13804 1.23681 1.00576 0.89989 0.89813 1.22334 0.91963 1.01972 1.01634 1.21754 1.00120 0.94065 0.94200 1.18727 0.92888 0.98294 0.98708 1.23255 1.01244 1.02064 0.78139 1.21446 0.88031 0.88851 0.96316 0.89806 1.42580 1.49586 1.34087 1.09730 1.19595 1.19281 1.09078 0.88898 0.90005 1.25441 0.99997 1.00003 1.00694 1.69805 1.31485 1.26875 1.33636 0.85332 0.77145 0.77425 0.80551 1.20540 1.23035 1.20330 0.94063 0.92220 0.91226 0.90112 0.93020 0.85135 0.81711 0.82062 0.78258 0.80948 0.84907 0.91526 0.90585 0.79063 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.98 71.98 0.65 -3.08 16 2 C -0.10 -2.89 3.51 -9.40 -0.03 -2.92 16 3 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.11 3.61 6.35 86.85 0.55 4.16 16 5 N -0.60 -19.83 3.33 -815.50 -2.71 -22.55 16 6 C 0.57 20.00 6.86 86.70 0.59 20.59 16 7 O -0.57 -22.75 15.45 -3.99 -0.06 -22.81 16 8 C -0.12 -3.85 5.37 -19.88 -0.11 -3.96 16 9 C -0.07 -2.09 8.42 22.56 0.19 -1.90 16 10 C -0.10 -2.28 9.92 21.97 0.22 -2.07 16 11 C -0.07 -1.57 9.96 22.40 0.22 -1.35 16 12 C 0.10 2.70 6.60 40.27 0.27 2.96 16 13 N -0.49 -11.68 10.34 -188.68 -1.95 -13.63 16 14 C 0.13 2.33 11.15 85.07 0.95 3.28 16 15 C -0.16 -2.92 10.04 22.17 0.22 -2.70 16 16 C -0.08 -1.97 9.24 22.45 0.21 -1.76 16 17 C -0.08 -2.43 5.76 -21.10 -0.12 -2.55 16 18 C 0.08 2.51 5.68 86.74 0.49 3.00 16 19 C 0.16 5.61 3.40 46.18 0.16 5.77 16 20 H 0.08 2.74 8.09 -2.39 -0.02 2.72 16 21 N -0.72 -32.17 4.45 -317.30 -1.41 -33.58 16 22 C -0.24 -11.84 9.96 84.04 0.84 -11.00 16 23 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 24 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 25 N -0.97 -56.30 13.06 21.65 0.28 -56.01 16 26 Si 0.97 43.57 29.55 68.60 2.03 45.60 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 29 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 30 H 0.04 1.51 6.27 -2.39 -0.01 1.49 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.42 7.99 -2.39 -0.02 2.40 16 34 H 0.05 1.85 8.04 -2.39 -0.02 1.84 16 35 H 0.13 3.93 6.33 -2.91 -0.02 3.91 16 36 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.20 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.13 3.77 6.22 -2.91 -0.02 3.76 16 41 H 0.07 2.37 5.77 -2.39 -0.01 2.35 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.38 18.56 6.25 -92.71 -0.58 17.98 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -67.46 360.11 2.39 -65.07 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.45 Total: 34.64 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.76 Total: 3.28 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -5.79 Total: -125.77 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -67.46 2.39 -65.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054950299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.338 kcal (2) G-P(sol) polarization free energy of solvation -67.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds