Wall clock time and date at job start Tue Mar 31 2020 14:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.64111 * 2 1 4 4 C 1.54324 * 110.87200 * 236.75396 * 2 1 3 5 5 N 1.47290 * 107.30591 * 219.38007 * 4 2 1 6 6 C 1.36945 * 125.79143 * 178.92221 * 5 4 2 7 7 H 1.07999 * 119.99990 * 0.02821 * 6 5 4 8 8 C 1.38807 * 119.99908 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99885 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00157 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46792 * 90.00162 * 10 8 6 12 12 H 1.48493 * 109.47109 * 210.00305 * 10 8 6 13 13 H 1.48501 * 109.46786 * 330.00591 * 10 8 6 14 14 C 1.47421 * 108.56108 * 358.92176 * 5 4 2 15 15 C 1.54914 * 104.92602 * 24.15452 * 14 5 4 16 16 H 1.09007 * 111.00467 * 81.00871 * 15 14 5 17 17 N 1.46498 * 111.00449 * 204.85693 * 15 14 5 18 18 C 1.34769 * 120.00517 * 273.55247 * 17 15 14 19 19 O 1.21549 * 119.99802 * 359.97438 * 18 17 15 20 20 C 1.47902 * 120.00199 * 180.02562 * 18 17 15 21 21 C 1.38888 * 121.11272 * 354.12473 * 20 18 17 22 22 C 1.39276 * 119.58354 * 180.02562 * 21 20 18 23 23 N 1.30990 * 121.87671 * 359.97438 * 22 21 20 24 24 C 1.33533 * 121.83581 * 0.02562 * 23 22 21 25 25 C 1.40716 * 120.97477 * 179.97438 * 24 23 22 26 26 C 1.36067 * 119.73929 * 179.13458 * 25 24 23 27 27 C 1.39353 * 121.05137 * 0.84338 * 26 25 24 28 28 C 1.36244 * 120.84240 * 359.46083 * 27 26 25 29 29 C 1.40106 * 119.63888 * 359.97070 * 28 27 26 30 30 H 1.09007 * 109.46593 * 296.85565 * 1 2 3 31 31 H 1.08995 * 109.47792 * 56.85955 * 1 2 3 32 32 H 1.09003 * 109.47116 * 176.86171 * 1 2 3 33 33 H 1.08998 * 109.88420 * 338.78870 * 4 2 1 34 34 H 1.08999 * 109.88708 * 99.95205 * 4 2 1 35 35 H 0.97003 * 119.99716 * 179.97438 * 9 8 6 36 36 H 1.09003 * 110.36706 * 265.26689 * 14 5 4 37 37 H 1.08999 * 110.36775 * 143.04903 * 14 5 4 38 38 H 0.97006 * 119.99425 * 93.54937 * 17 15 14 39 39 H 1.08000 * 120.20824 * 0.02562 * 21 20 18 40 40 H 1.07993 * 119.06153 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.12483 * 359.97438 * 25 24 23 42 42 H 1.07998 * 119.47543 * 180.25728 * 26 25 24 43 43 H 1.08003 * 119.57847 * 179.43062 * 27 26 25 44 44 H 1.08002 * 120.18211 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7905 -1.2060 5 7 3.2515 -1.5488 -0.7353 6 6 4.0154 -2.3950 -1.4942 7 1 3.7758 -2.5514 -2.5356 8 6 5.0977 -3.0517 -0.9248 9 7 5.3894 -2.8615 0.3445 10 14 6.1394 -4.2065 -1.9596 11 1 7.2491 -3.4444 -2.5866 12 1 6.6998 -5.2761 -1.0954 13 1 5.2972 -4.8168 -3.0196 14 6 3.4653 -1.2446 0.6912 15 6 2.0790 -0.7933 1.2151 16 1 1.4469 -1.6529 1.4383 17 7 2.2176 0.0727 2.3885 18 6 2.3116 -0.4693 3.6188 19 8 2.2809 -1.6768 3.7549 20 6 2.4509 0.4051 4.8035 21 6 2.6088 1.7783 4.6674 22 6 2.7376 2.5717 5.8048 23 7 2.7142 2.0609 7.0108 24 6 2.5659 0.7501 7.2178 25 6 2.5438 0.2207 8.5214 26 6 2.3736 -1.1169 8.7039 27 6 2.2374 -1.9790 7.6176 28 6 2.2601 -1.5032 6.3411 29 6 2.4219 -0.1298 6.1164 30 1 -0.3633 0.4643 0.9169 31 1 -0.3634 0.5618 -0.8604 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3190 -1.4772 -1.5771 34 1 2.3774 -0.1016 -1.9964 35 1 6.1455 -3.3207 0.7425 36 1 4.1930 -0.4408 0.8027 37 1 3.8003 -2.1352 1.2230 38 1 2.2418 1.0364 2.2799 39 1 2.6314 2.2280 3.6858 40 1 2.8595 3.6384 5.6892 41 1 2.6479 0.8753 9.3741 42 1 2.3531 -1.5181 9.7064 43 1 2.1126 -3.0379 7.7897 44 1 2.1540 -2.1810 5.5070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080070245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:32 Heat of formation + Delta-G solvation = 33.193297 kcal Electronic energy + Delta-G solvation = -27109.584812 eV Core-core repulsion = 23412.794029 eV Total energy + Delta-G solvation = -3696.790783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16146 -40.70422 -39.12403 -38.08804 -35.76497 -34.70227 -34.14411 -32.18473 -31.55116 -31.11373 -29.49565 -27.44929 -26.30012 -25.16500 -24.56043 -23.76136 -22.36277 -21.76534 -21.08262 -19.17447 -18.95953 -18.60389 -18.34953 -17.36359 -16.95465 -16.53392 -16.16841 -15.98332 -15.66185 -15.60100 -15.16159 -14.91371 -14.75824 -14.44883 -14.30936 -14.11779 -14.06790 -13.91230 -13.39128 -13.06748 -12.85860 -12.79592 -12.65232 -12.58505 -12.32944 -12.21604 -12.04711 -11.84792 -11.68674 -11.55375 -11.43056 -11.36352 -10.78522 -10.36698 -10.11805 -9.81182 -9.29807 -8.92138 -7.78905 -5.25608 -0.95609 -0.22669 0.66764 1.43551 1.46242 1.55110 1.73622 1.91467 2.10198 2.47724 3.08931 3.27694 3.30947 3.39932 3.60340 3.64007 3.69811 3.79498 3.86306 4.00702 4.07157 4.16765 4.22668 4.39753 4.46395 4.54279 4.58740 4.63183 4.64225 4.77648 4.88784 5.00409 5.04456 5.06064 5.08717 5.22388 5.26473 5.34047 5.43586 5.48385 5.48695 5.54401 5.61913 5.78713 5.88134 6.26274 6.44945 6.79543 7.04638 7.13800 7.74829 8.37168 9.21328 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.003354 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.612597 B = 8347.270365 C = 9398.736500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 H 0.102 0.898 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.238 4.238 7 H 0.087 0.913 8 C -0.070 4.070 9 N -0.949 5.949 10 Si 0.981 3.019 11 H -0.284 1.284 12 H -0.298 1.298 13 H -0.266 1.266 14 C 0.156 3.844 15 C 0.138 3.862 16 H 0.069 0.931 17 N -0.687 5.687 18 C 0.553 3.447 19 O -0.562 6.562 20 C -0.091 4.091 21 C -0.121 4.121 22 C 0.128 3.872 23 N -0.473 5.473 24 C 0.102 3.898 25 C -0.104 4.104 26 C -0.093 4.093 27 C -0.115 4.115 28 C -0.133 4.133 29 C -0.087 4.087 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.243 0.757 36 H -0.009 1.009 37 H 0.062 0.938 38 H 0.415 0.585 39 H 0.177 0.823 40 H 0.210 0.790 41 H 0.157 0.843 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 13.121 12.894 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.120 0.880 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.367 4.367 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.599 5.599 10 Si 0.809 3.191 11 H -0.211 1.211 12 H -0.224 1.224 13 H -0.190 1.190 14 C 0.029 3.971 15 C 0.031 3.969 16 H 0.087 0.913 17 N -0.338 5.338 18 C 0.340 3.660 19 O -0.442 6.442 20 C -0.102 4.102 21 C -0.141 4.141 22 C -0.044 4.044 23 N -0.181 5.181 24 C -0.018 4.018 25 C -0.122 4.122 26 C -0.112 4.112 27 C -0.133 4.133 28 C -0.151 4.151 29 C -0.090 4.090 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.009 0.991 37 H 0.080 0.920 38 H 0.254 0.746 39 H 0.194 0.806 40 H 0.227 0.773 41 H 0.175 0.825 42 H 0.184 0.816 43 H 0.164 0.836 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.140 12.596 13.745 21.223 hybrid contribution 0.993 -1.204 -1.454 2.133 sum -9.148 11.392 12.292 19.093 Atomic orbital electron populations 1.21710 0.91849 1.02046 1.03196 1.22382 0.97498 0.99176 0.92064 0.88014 1.21667 0.88550 0.93386 0.95702 1.44750 1.31959 1.51059 1.07577 1.19493 1.06332 1.17326 0.93584 0.89543 1.25705 1.00450 1.02575 0.97499 1.70122 1.30159 1.47215 1.12412 0.85039 0.78624 0.77998 0.77460 1.21061 1.22441 1.19015 1.21878 0.91848 0.98346 0.84990 1.22235 0.97443 0.92963 0.84219 0.91261 1.45537 1.72769 1.10844 1.04676 1.18476 0.76256 0.87485 0.83742 1.90629 1.51317 1.16513 1.85712 1.20360 1.02452 0.95119 0.92259 1.22857 0.96547 0.91543 1.03154 1.23632 0.92468 1.02440 0.85851 1.67858 1.11428 1.12391 1.26469 1.19177 0.99672 0.88991 0.94010 1.21118 1.00127 0.96272 0.94723 1.21349 0.96624 0.92692 1.00545 1.21413 0.98230 1.01702 0.91934 1.22007 0.98359 0.94917 0.99854 1.18894 1.01630 0.95651 0.92828 0.91123 0.90148 0.93593 0.95034 0.94636 0.94689 0.99132 0.92028 0.74640 0.80550 0.77338 0.82517 0.81558 0.83568 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.17 71.98 0.66 -2.30 16 2 C -0.09 -2.75 3.16 -9.61 -0.03 -2.78 16 3 H 0.10 2.53 8.00 -2.38 -0.02 2.51 16 4 C 0.13 5.16 6.86 86.68 0.59 5.76 16 5 N -0.63 -32.63 3.40 -691.31 -2.35 -34.99 16 6 C -0.24 -13.59 10.28 84.03 0.86 -12.73 16 7 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 8 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 9 N -0.95 -59.62 10.09 21.65 0.22 -59.40 16 10 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 C 0.16 7.96 5.58 86.86 0.48 8.44 16 15 C 0.14 5.21 2.76 46.38 0.13 5.34 16 16 H 0.07 2.98 7.64 -2.38 -0.02 2.96 16 17 N -0.69 -20.93 5.19 -438.77 -2.28 -23.21 16 18 C 0.55 19.41 7.75 86.80 0.67 20.08 16 19 O -0.56 -24.86 13.28 -3.87 -0.05 -24.91 16 20 C -0.09 -2.62 5.94 -19.68 -0.12 -2.74 16 21 C -0.12 -2.34 9.60 22.68 0.22 -2.13 16 22 C 0.13 2.26 11.14 85.07 0.95 3.21 16 23 N -0.47 -11.15 10.30 -188.74 -1.94 -13.10 16 24 C 0.10 2.73 6.61 40.35 0.27 2.99 16 25 C -0.10 -2.22 9.99 22.37 0.22 -2.00 16 26 C -0.09 -1.76 9.94 22.03 0.22 -1.54 16 27 C -0.11 -2.75 9.96 22.07 0.22 -2.53 16 28 C -0.13 -4.20 9.25 22.26 0.21 -3.99 16 29 C -0.09 -2.67 5.76 -21.09 -0.12 -2.79 16 30 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.17 8.07 -2.39 -0.02 1.15 16 33 H 0.03 1.22 7.78 -2.39 -0.02 1.20 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.06 3.82 5.86 -2.39 -0.01 3.81 16 38 H 0.42 8.84 6.69 -92.70 -0.62 8.22 16 39 H 0.18 2.03 6.55 -2.91 -0.02 2.02 16 40 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 42 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.14 5.28 4.99 -2.91 -0.01 5.26 16 Total: -1.00 -81.08 358.86 1.94 -79.14 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.41 Total: 20.82 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.90 Total: 6.67 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -6.35 Total: -130.69 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -81.08 1.94 -79.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080070245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.336 kcal (2) G-P(sol) polarization free energy of solvation -81.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds