Wall clock time and date at job start Tue Mar 31 2020 14:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.36938 * 125.79079 * 178.92205 * 5 4 2 7 7 H 1.07995 * 120.00281 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47166 * 59.99694 * 10 8 6 12 12 H 1.48493 * 109.47565 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47135 * 300.00010 * 10 8 6 14 14 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 15 15 C 1.54908 * 104.92961 * 24.15407 * 14 5 4 16 16 H 1.09008 * 111.00494 * 81.01141 * 15 14 5 17 17 N 1.46494 * 111.00587 * 204.82382 * 15 14 5 18 18 C 1.34787 * 120.00004 * 273.54798 * 17 15 14 19 19 O 1.21604 * 119.99824 * 359.97438 * 18 17 15 20 20 C 1.47443 * 119.99837 * 179.97438 * 18 17 15 21 21 C 1.38949 * 121.17346 * 0.02562 * 20 18 17 22 22 N 1.32197 * 121.31576 * 180.02562 * 21 20 18 23 23 C 1.31195 * 123.69849 * 359.97438 * 22 21 20 24 24 C 1.40382 * 120.91705 * 0.02562 * 23 22 21 25 25 C 1.40390 * 122.14589 * 180.02562 * 24 23 22 26 26 C 1.36244 * 119.48156 * 179.06325 * 25 24 23 27 27 C 1.39295 * 121.10544 * 0.91837 * 26 25 24 28 28 C 1.36447 * 120.94269 * 359.37859 * 27 26 25 29 29 C 1.39679 * 119.43723 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 31 31 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 32 32 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 33 33 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 34 34 H 1.08999 * 109.88411 * 99.95540 * 4 2 1 35 35 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 36 36 H 1.09002 * 110.36696 * 265.26054 * 14 5 4 37 37 H 1.08995 * 110.36608 * 143.04891 * 14 5 4 38 38 H 0.96999 * 120.00536 * 93.54386 * 17 15 14 39 39 H 1.07999 * 119.33974 * 359.97438 * 21 20 18 40 40 H 1.08005 * 119.54185 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.25401 * 359.95515 * 25 24 23 42 42 H 1.08004 * 119.44532 * 180.27230 * 26 25 24 43 43 H 1.07994 * 119.52565 * 179.40864 * 27 26 25 44 44 H 1.07999 * 120.27217 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0155 -2.3951 -1.4939 7 1 3.7759 -2.5515 -2.5353 8 6 5.0977 -3.0518 -0.9245 9 7 5.3893 -2.8615 0.3449 10 14 6.1403 -4.2055 -1.9595 11 1 6.7336 -3.4530 -3.0940 12 1 7.2262 -4.7763 -1.1229 13 1 5.2901 -5.3039 -2.4848 14 6 3.4652 -1.2446 0.6914 15 6 2.0789 -0.7933 1.2151 16 1 1.4468 -1.6529 1.4384 17 7 2.2174 0.0720 2.3890 18 6 2.3108 -0.4708 3.6192 19 8 2.2798 -1.6789 3.7546 20 6 2.4507 0.4002 4.8006 21 6 2.4884 1.7834 4.6740 22 7 2.6142 2.5670 5.7313 23 6 2.7116 2.1202 6.9610 24 6 2.6876 0.7430 7.2320 25 6 2.7893 0.2367 8.5375 26 6 2.7406 -1.1097 8.7402 27 6 2.6104 -1.9940 7.6719 28 6 2.5152 -1.5365 6.3900 29 6 2.5494 -0.1613 6.1476 30 1 -0.3634 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3191 -1.4773 -1.5770 34 1 2.3776 -0.1016 -1.9963 35 1 6.1459 -3.3201 0.7426 36 1 4.1929 -0.4409 0.8030 37 1 3.8001 -2.1352 1.2232 38 1 2.2419 1.0357 2.2811 39 1 2.4142 2.2272 3.6922 40 1 2.8126 2.8216 7.7760 41 1 2.8908 0.9099 9.3758 42 1 2.8144 -1.4983 9.7452 43 1 2.5840 -3.0570 7.8611 44 1 2.4150 -2.2319 5.5697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080987306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:35 Heat of formation + Delta-G solvation = 51.922484 kcal Electronic energy + Delta-G solvation = -27073.797643 eV Core-core repulsion = 23377.819019 eV Total energy + Delta-G solvation = -3695.978625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.94564 -39.28705 -37.50353 -37.44544 -34.02744 -32.95736 -32.55471 -31.29156 -30.36864 -29.92424 -27.69507 -25.69152 -25.02127 -23.66170 -23.56763 -22.65075 -20.87814 -20.14857 -19.63765 -18.11023 -17.49555 -17.40782 -16.88797 -16.02291 -15.73866 -15.05667 -14.93991 -14.74166 -14.61075 -13.89725 -13.86685 -13.75510 -13.53679 -13.00894 -12.90679 -12.83664 -12.50685 -12.30640 -12.25668 -12.02861 -11.73465 -11.50429 -11.23450 -11.08935 -10.76804 -10.64590 -10.42150 -10.14079 -10.01550 -9.97279 -9.76598 -9.73341 -9.25582 -9.22588 -8.64110 -8.57535 -8.19870 -6.83340 -5.61700 -3.05746 -0.04213 0.75067 1.58502 2.77566 3.26304 3.34192 3.42669 3.46479 3.48450 4.00212 4.09669 4.38212 4.49746 4.55245 4.56027 4.73231 4.91316 5.02243 5.08417 5.15176 5.28684 5.35132 5.41729 5.49162 5.54845 5.62562 5.73204 5.82546 5.92089 5.97152 6.02487 6.13542 6.21106 6.22982 6.35247 6.38137 6.43994 6.48093 6.65303 6.69786 6.82026 6.92935 7.44335 7.61931 7.71036 7.78084 7.91996 8.38391 8.48906 9.22539 9.83757 10.47132 11.40901 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.003389 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.601188 B = 8260.285387 C = 9443.460767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.227 4.227 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.915 3.085 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.148 3.852 15 C 0.120 3.880 16 H 0.092 0.908 17 N -0.705 5.705 18 C 0.563 3.437 19 O -0.524 6.524 20 C -0.160 4.160 21 C 0.114 3.886 22 N -0.496 5.496 23 C 0.169 3.831 24 C -0.121 4.121 25 C -0.094 4.094 26 C -0.118 4.118 27 C -0.101 4.101 28 C -0.105 4.105 29 C 0.010 3.990 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.253 0.747 36 H 0.013 0.987 37 H 0.114 0.886 38 H 0.393 0.607 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 9.642 15.483 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.022 3.978 15 C 0.016 3.984 16 H 0.110 0.890 17 N -0.355 5.355 18 C 0.349 3.651 19 O -0.401 6.401 20 C -0.166 4.166 21 C -0.030 4.030 22 N -0.204 5.204 23 C -0.003 4.003 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.122 4.122 29 C 0.005 3.995 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.131 0.869 38 H 0.228 0.772 39 H 0.175 0.825 40 H 0.182 0.818 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.491 9.485 15.244 19.860 hybrid contribution 0.683 -0.832 -0.453 1.168 sum -7.807 8.653 14.791 18.831 Atomic orbital electron populations 1.21749 0.94873 1.01963 1.00956 1.22430 0.95264 0.99205 0.96200 0.90759 1.21386 0.90273 0.93209 0.93664 1.44439 1.30744 1.50618 1.07137 1.19010 1.06253 1.17374 0.92920 0.90378 1.24817 0.98757 1.00533 0.96375 1.69789 1.30002 1.46048 1.10715 0.86152 0.79797 0.80628 0.78892 1.21222 1.21565 1.21090 1.22236 0.89133 1.01251 0.85138 1.22751 1.01294 0.92241 0.82158 0.88981 1.45804 1.73615 1.10017 1.06043 1.17728 0.77183 0.87589 0.82566 1.90667 1.49868 1.14315 1.85284 1.22049 1.06053 0.94870 0.93589 1.22727 0.93831 0.88882 0.97559 1.67080 1.13242 1.40746 0.99285 1.23234 0.90643 0.92260 0.94163 1.19007 1.04189 0.94789 0.94284 1.20921 0.99535 0.95935 0.94995 1.20996 0.99682 0.93467 0.99424 1.21202 0.97906 1.00389 0.92557 1.21904 0.96459 0.95009 0.98860 1.18940 0.95843 0.94052 0.90663 0.93081 0.92781 0.92415 0.95378 0.95774 0.93605 0.96926 0.86870 0.77226 0.82539 0.81841 0.84896 0.85612 0.85336 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.17 37.16 0.34 -1.50 16 2 C -0.11 -1.84 3.16 -88.79 -0.28 -2.12 16 3 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 4 C 0.14 2.88 6.86 -2.92 -0.02 2.86 16 5 N -0.60 -15.57 3.40 -169.86 -0.58 -16.15 16 6 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.56 10.09 55.49 0.56 -27.00 16 10 Si 0.92 22.43 29.55 -169.99 -5.02 17.40 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.15 3.68 5.58 -2.53 -0.01 3.67 16 15 C 0.12 2.31 2.76 -65.79 -0.18 2.12 16 16 H 0.09 1.93 7.64 -51.92 -0.40 1.53 16 17 N -0.70 -11.28 5.19 -52.79 -0.27 -11.56 16 18 C 0.56 9.77 7.77 -12.51 -0.10 9.68 16 19 O -0.52 -10.85 13.48 5.27 0.07 -10.78 16 20 C -0.16 -2.38 6.07 -102.66 -0.62 -3.00 16 21 C 0.11 1.45 10.71 -17.13 -0.18 1.26 16 22 N -0.50 -6.09 10.22 -12.58 -0.13 -6.22 16 23 C 0.17 1.75 11.00 -17.02 -0.19 1.56 16 24 C -0.12 -1.39 5.74 -106.89 -0.61 -2.00 16 25 C -0.09 -0.84 9.82 -39.49 -0.39 -1.23 16 26 C -0.12 -1.07 9.94 -39.91 -0.40 -1.47 16 27 C -0.10 -1.13 9.96 -39.83 -0.40 -1.53 16 28 C -0.11 -1.50 9.32 -39.69 -0.37 -1.87 16 29 C 0.01 0.15 5.90 -104.74 -0.62 -0.47 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.03 0.57 7.78 -51.93 -0.40 0.17 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.11 3.30 5.86 -51.93 -0.30 3.00 16 38 H 0.39 4.99 6.62 -40.82 -0.27 4.72 16 39 H 0.16 1.59 6.44 -52.49 -0.34 1.25 16 40 H 0.16 1.06 8.06 -52.48 -0.42 0.63 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.17 2.78 5.24 -52.49 -0.28 2.50 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -34.04 359.37 -9.99 -44.03 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.75 Total: 5.81 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -4.28 Total: -0.96 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.42 Total: -60.92 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.04 -9.99 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080987306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.952 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds