Wall clock time and date at job start Tue Mar 31 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.36938 * 125.79079 * 178.92205 * 5 4 2 7 7 H 1.07995 * 120.00281 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47166 * 59.99694 * 10 8 6 12 12 H 1.48493 * 109.47565 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47135 * 300.00010 * 10 8 6 14 14 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 15 15 C 1.54908 * 104.92961 * 24.15407 * 14 5 4 16 16 H 1.09008 * 111.00494 * 81.01141 * 15 14 5 17 17 N 1.46494 * 111.00587 * 204.82382 * 15 14 5 18 18 C 1.34787 * 120.00004 * 273.54798 * 17 15 14 19 19 O 1.21604 * 119.99824 * 359.97438 * 18 17 15 20 20 C 1.47443 * 119.99837 * 179.97438 * 18 17 15 21 21 C 1.38949 * 121.17346 * 0.02562 * 20 18 17 22 22 N 1.32197 * 121.31576 * 180.02562 * 21 20 18 23 23 C 1.31195 * 123.69849 * 359.97438 * 22 21 20 24 24 C 1.40382 * 120.91705 * 0.02562 * 23 22 21 25 25 C 1.40390 * 122.14589 * 180.02562 * 24 23 22 26 26 C 1.36244 * 119.48156 * 179.06325 * 25 24 23 27 27 C 1.39295 * 121.10544 * 0.91837 * 26 25 24 28 28 C 1.36447 * 120.94269 * 359.37859 * 27 26 25 29 29 C 1.39679 * 119.43723 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 31 31 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 32 32 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 33 33 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 34 34 H 1.08999 * 109.88411 * 99.95540 * 4 2 1 35 35 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 36 36 H 1.09002 * 110.36696 * 265.26054 * 14 5 4 37 37 H 1.08995 * 110.36608 * 143.04891 * 14 5 4 38 38 H 0.96999 * 120.00536 * 93.54386 * 17 15 14 39 39 H 1.07999 * 119.33974 * 359.97438 * 21 20 18 40 40 H 1.08005 * 119.54185 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.25401 * 359.95515 * 25 24 23 42 42 H 1.08004 * 119.44532 * 180.27230 * 26 25 24 43 43 H 1.07994 * 119.52565 * 179.40864 * 27 26 25 44 44 H 1.07999 * 120.27217 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0155 -2.3951 -1.4939 7 1 3.7759 -2.5515 -2.5353 8 6 5.0977 -3.0518 -0.9245 9 7 5.3893 -2.8615 0.3449 10 14 6.1403 -4.2055 -1.9595 11 1 6.7336 -3.4530 -3.0940 12 1 7.2262 -4.7763 -1.1229 13 1 5.2901 -5.3039 -2.4848 14 6 3.4652 -1.2446 0.6914 15 6 2.0789 -0.7933 1.2151 16 1 1.4468 -1.6529 1.4384 17 7 2.2174 0.0720 2.3890 18 6 2.3108 -0.4708 3.6192 19 8 2.2798 -1.6789 3.7546 20 6 2.4507 0.4002 4.8006 21 6 2.4884 1.7834 4.6740 22 7 2.6142 2.5670 5.7313 23 6 2.7116 2.1202 6.9610 24 6 2.6876 0.7430 7.2320 25 6 2.7893 0.2367 8.5375 26 6 2.7406 -1.1097 8.7402 27 6 2.6104 -1.9940 7.6719 28 6 2.5152 -1.5365 6.3900 29 6 2.5494 -0.1613 6.1476 30 1 -0.3634 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3191 -1.4773 -1.5770 34 1 2.3776 -0.1016 -1.9963 35 1 6.1459 -3.3201 0.7426 36 1 4.1929 -0.4409 0.8030 37 1 3.8001 -2.1352 1.2232 38 1 2.2419 1.0357 2.2811 39 1 2.4142 2.2272 3.6922 40 1 2.8126 2.8216 7.7760 41 1 2.8908 0.9099 9.3758 42 1 2.8144 -1.4983 9.7452 43 1 2.5840 -3.0570 7.8611 44 1 2.4150 -2.2319 5.5697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080987306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:34 Heat of formation + Delta-G solvation = 29.182970 kcal Electronic energy + Delta-G solvation = -27074.783703 eV Core-core repulsion = 23377.819019 eV Total energy + Delta-G solvation = -3696.964684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.93960 -40.63867 -39.07392 -38.34476 -35.72967 -34.47814 -33.67990 -32.19580 -32.16805 -30.93361 -29.33699 -27.43426 -26.18481 -25.13549 -24.49959 -23.72242 -22.38325 -21.75231 -21.08542 -19.05785 -18.95964 -18.52017 -18.39800 -17.35211 -17.01992 -16.67906 -16.10312 -16.00476 -15.71399 -15.61980 -14.97717 -14.86741 -14.68768 -14.44554 -14.29390 -14.12178 -13.90815 -13.69583 -13.39477 -13.16919 -13.06681 -12.91251 -12.83403 -12.60228 -12.43228 -12.26215 -12.04294 -11.84718 -11.68959 -11.42862 -11.10479 -11.06129 -10.78331 -10.41424 -10.12941 -10.06742 -9.13999 -8.93028 -7.78994 -5.26336 -0.96422 -0.13540 0.66645 1.42573 1.47122 1.53552 1.74977 2.00025 2.21071 2.47608 3.06111 3.21853 3.30227 3.50239 3.58918 3.63066 3.70510 3.77656 3.88331 3.99872 4.01939 4.06838 4.27108 4.32302 4.46077 4.50170 4.58732 4.63182 4.65383 4.76958 4.87211 5.00635 5.03248 5.06083 5.07884 5.21324 5.26327 5.40312 5.42481 5.47264 5.50133 5.56717 5.61791 5.77945 5.90808 6.25412 6.48492 6.81329 7.03978 7.18756 7.73890 8.36913 9.21131 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.003389 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.601188 B = 8260.285387 C = 9443.460767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.099 0.901 4 C 0.133 3.867 5 N -0.627 5.627 6 C -0.241 4.241 7 H 0.087 0.913 8 C -0.071 4.071 9 N -0.950 5.950 10 Si 0.983 3.017 11 H -0.273 1.273 12 H -0.296 1.296 13 H -0.275 1.275 14 C 0.157 3.843 15 C 0.139 3.861 16 H 0.068 0.932 17 N -0.694 5.694 18 C 0.559 3.441 19 O -0.571 6.571 20 C -0.201 4.201 21 C 0.132 3.868 22 N -0.516 5.516 23 C 0.192 3.808 24 C -0.138 4.138 25 C -0.071 4.071 26 C -0.124 4.124 27 C -0.090 4.090 28 C -0.154 4.154 29 C -0.010 4.010 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.244 0.756 36 H -0.012 1.012 37 H 0.062 0.938 38 H 0.411 0.589 39 H 0.177 0.823 40 H 0.214 0.786 41 H 0.182 0.818 42 H 0.165 0.835 43 H 0.141 0.859 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 12.485 17.415 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.117 0.883 4 C 0.008 3.992 5 N -0.353 5.353 6 C -0.370 4.370 7 H 0.105 0.895 8 C -0.263 4.263 9 N -0.600 5.600 10 Si 0.811 3.189 11 H -0.199 1.199 12 H -0.223 1.223 13 H -0.201 1.201 14 C 0.030 3.970 15 C 0.033 3.967 16 H 0.086 0.914 17 N -0.345 5.345 18 C 0.348 3.652 19 O -0.451 6.451 20 C -0.206 4.206 21 C -0.012 4.012 22 N -0.224 5.224 23 C 0.021 3.979 24 C -0.140 4.140 25 C -0.090 4.090 26 C -0.142 4.142 27 C -0.109 4.109 28 C -0.171 4.171 29 C -0.015 4.015 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.006 0.994 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.194 0.806 40 H 0.230 0.770 41 H 0.199 0.801 42 H 0.182 0.818 43 H 0.159 0.841 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.494 12.382 17.152 23.187 hybrid contribution 0.986 -1.693 -0.901 2.156 sum -8.508 10.689 16.252 21.231 Atomic orbital electron populations 1.21702 0.91792 1.02073 1.03146 1.22385 0.97571 0.99085 0.92218 0.88312 1.21658 0.88586 0.93374 0.95611 1.44750 1.31977 1.51058 1.07551 1.19475 1.06463 1.17431 0.93624 0.89489 1.25742 1.00448 1.02580 0.97534 1.70131 1.30158 1.47179 1.12506 0.85082 0.77829 0.78669 0.77346 1.19890 1.22277 1.20070 1.21864 0.91853 0.98226 0.85017 1.22199 0.97368 0.92916 0.84257 0.91353 1.45578 1.73431 1.10574 1.04904 1.18294 0.75889 0.87457 0.83565 1.90659 1.51899 1.16533 1.86041 1.21815 1.10594 0.95404 0.92784 1.23012 0.91420 0.87868 0.98893 1.67247 1.14982 1.40311 0.99875 1.24068 0.86608 0.92493 0.94685 1.19340 1.04995 0.95037 0.94657 1.21498 0.95958 0.96599 0.94977 1.21401 0.99101 0.93451 1.00211 1.21497 0.95585 1.01821 0.92016 1.21672 1.00959 0.95139 0.99374 1.19195 0.96281 0.94522 0.91537 0.91256 0.90102 0.93484 0.94918 0.94676 0.94672 0.99423 0.92018 0.75060 0.80644 0.76999 0.80054 0.81783 0.84072 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.17 71.98 0.66 -2.53 16 2 C -0.09 -3.00 3.16 -9.61 -0.03 -3.03 16 3 H 0.10 2.73 8.00 -2.39 -0.02 2.71 16 4 C 0.13 5.42 6.86 86.68 0.59 6.01 16 5 N -0.63 -33.68 3.40 -691.31 -2.35 -36.04 16 6 C -0.24 -14.05 10.28 84.03 0.86 -13.19 16 7 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 8 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 9 N -0.95 -60.83 10.09 21.65 0.22 -60.62 16 10 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 14 C 0.16 8.35 5.58 86.85 0.48 8.83 16 15 C 0.14 5.59 2.76 46.38 0.13 5.72 16 16 H 0.07 3.09 7.64 -2.38 -0.02 3.07 16 17 N -0.69 -23.29 5.19 -439.19 -2.28 -25.57 16 18 C 0.56 21.13 7.77 86.67 0.67 21.80 16 19 O -0.57 -26.58 13.48 -4.04 -0.05 -26.63 16 20 C -0.20 -6.23 6.07 -18.59 -0.11 -6.35 16 21 C 0.13 3.25 10.71 84.81 0.91 4.16 16 22 N -0.52 -11.41 10.22 -193.73 -1.98 -13.39 16 23 C 0.19 3.28 11.00 85.31 0.94 4.21 16 24 C -0.14 -2.87 5.74 -21.33 -0.12 -2.99 16 25 C -0.07 -0.97 9.82 22.33 0.22 -0.75 16 26 C -0.12 -1.87 9.94 22.06 0.22 -1.65 16 27 C -0.09 -2.02 9.96 22.11 0.22 -1.80 16 28 C -0.15 -4.80 9.32 22.20 0.21 -4.59 16 29 C -0.01 -0.30 5.90 -19.94 -0.12 -0.42 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.27 8.07 -2.39 -0.02 1.25 16 33 H 0.03 1.31 7.78 -2.38 -0.02 1.29 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.24 15.31 8.31 -92.71 -0.77 14.53 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.06 3.95 5.86 -2.39 -0.01 3.93 16 38 H 0.41 10.40 6.62 -92.71 -0.61 9.79 16 39 H 0.18 3.35 6.44 -2.91 -0.02 3.33 16 40 H 0.21 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.18 0.74 8.06 -2.91 -0.02 0.71 16 42 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.13 4.99 5.24 -2.91 -0.02 4.97 16 Total: -1.00 -83.60 359.37 2.20 -81.41 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.42 Total: 21.46 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.20 Total: 9.69 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -6.39 Total: -135.61 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -83.60 2.20 -81.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080987306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.588 kcal (2) G-P(sol) polarization free energy of solvation -83.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds