Wall clock time and date at job start Tue Mar 31 2020 14:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.87402 * 2 1 4 4 C 1.54323 * 109.88257 * 238.98592 * 2 1 3 5 5 H 1.09001 * 110.71692 * 336.93032 * 4 2 1 6 6 N 1.46505 * 110.72298 * 100.02393 * 4 2 1 7 7 C 1.34775 * 120.00303 * 205.00538 * 6 4 2 8 8 O 1.21563 * 119.99539 * 359.97438 * 7 6 4 9 9 C 1.47765 * 120.00237 * 180.02562 * 7 6 4 10 10 C 1.40635 * 119.80277 * 359.97173 * 9 7 6 11 11 C 1.35698 * 120.92152 * 180.02562 * 10 9 7 12 12 C 1.40759 * 120.11055 * 359.95868 * 11 10 9 13 13 N 1.33654 * 120.83317 * 180.02562 * 12 11 10 14 14 C 1.31118 * 121.39598 * 179.97438 * 13 12 11 15 15 C 1.39308 * 121.76897 * 0.03649 * 14 13 12 16 16 C 1.36580 * 119.90459 * 359.94121 * 15 14 13 17 17 C 1.40893 * 118.16059 * 0.03613 * 16 15 14 18 18 C 1.38545 * 119.80747 * 179.97438 * 9 7 6 19 19 C 1.55156 * 102.94255 * 218.38828 * 4 2 1 20 20 C 1.54902 * 101.58106 * 35.50164 * 19 4 2 21 21 N 1.47022 * 109.88716 * 121.17423 * 2 1 3 22 22 C 1.36934 * 125.64610 * 298.32776 * 21 2 1 23 23 H 1.07997 * 120.00598 * 359.97438 * 22 21 2 24 24 C 1.38818 * 119.99625 * 179.97438 * 22 21 2 25 25 N 1.31618 * 120.00074 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99970 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47587 * 89.99692 * 26 24 22 28 28 H 1.48500 * 109.47092 * 209.99738 * 26 24 22 29 29 H 1.48510 * 109.46825 * 329.99658 * 26 24 22 30 30 H 1.09004 * 109.47131 * 181.01877 * 1 2 3 31 31 H 1.09003 * 109.47308 * 301.01184 * 1 2 3 32 32 H 1.08997 * 109.47602 * 61.01714 * 1 2 3 33 33 H 0.97005 * 119.99291 * 24.99770 * 6 4 2 34 34 H 1.07998 * 119.53854 * 0.04547 * 10 9 7 35 35 H 1.08004 * 119.94459 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.11466 * 179.97438 * 14 13 12 37 37 H 1.08005 * 120.04937 * 179.97438 * 15 14 13 38 38 H 1.08004 * 120.92470 * 180.02562 * 16 15 14 39 39 H 1.08000 * 120.29798 * 359.97438 * 18 9 7 40 40 H 1.08997 * 111.00494 * 153.57513 * 19 4 2 41 41 H 1.09004 * 111.00410 * 277.42165 * 19 4 2 42 42 H 1.09008 * 110.36651 * 204.15423 * 20 19 4 43 43 H 1.09002 * 110.37112 * 81.83338 * 20 19 4 44 44 H 0.97001 * 119.99764 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3038 -1.4413 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.4580 -0.1832 -3.5796 8 8 2.1284 -1.3143 -3.8793 9 6 2.8626 0.7718 -4.6321 10 6 3.2436 2.0791 -4.2807 11 6 3.6187 2.9748 -5.2286 12 6 3.6318 2.6025 -6.5860 13 7 3.9992 3.4728 -7.5315 14 6 4.0159 3.1377 -8.7990 15 6 3.6524 1.8622 -9.2253 16 6 3.2667 0.9230 -8.3117 17 6 3.2504 1.2867 -6.9506 18 6 2.8643 0.3741 -5.9592 19 6 3.2876 -1.5132 -0.6946 20 6 2.8145 -1.8804 0.7340 21 7 2.0301 -0.7157 1.1829 22 6 1.8050 -0.3590 2.4857 23 1 1.2148 0.5168 2.7117 24 6 2.3354 -1.1233 3.5160 25 7 3.0543 -2.1909 3.2407 26 14 2.0279 -0.6373 5.2932 27 1 0.7874 -1.2937 5.7785 28 1 3.1761 -1.0688 6.1302 29 1 1.8757 0.8372 5.3839 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3634 0.5295 0.8808 32 1 -0.3634 0.4979 -0.8989 33 1 2.7186 1.1018 -2.0480 34 1 3.2379 2.3743 -3.2418 35 1 3.9087 3.9746 -4.9409 36 1 4.3187 3.8704 -9.5323 37 1 3.6759 1.6162 -10.2767 38 1 2.9819 -0.0709 -8.6239 39 1 2.5718 -0.6303 -6.2274 40 1 3.4851 -2.4092 -1.2830 41 1 4.1654 -0.8679 -0.6617 42 1 3.6717 -2.0357 1.3893 43 1 2.1887 -2.7725 0.7089 44 1 3.4252 -2.7247 3.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088834966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:14 Heat of formation + Delta-G solvation = 48.436319 kcal Electronic energy + Delta-G solvation = -26410.430129 eV Core-core repulsion = 22714.300333 eV Total energy + Delta-G solvation = -3696.129796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.20091 -39.77590 -37.79157 -36.79117 -34.21826 -33.78723 -32.18595 -30.94954 -30.40290 -30.32557 -28.60016 -25.67637 -24.24826 -24.11978 -23.95622 -22.40462 -21.13834 -20.25849 -19.85365 -18.45765 -17.91063 -17.24394 -16.76918 -16.09074 -15.86035 -14.98074 -14.92587 -14.70165 -14.42964 -14.34101 -14.12755 -13.90416 -13.71738 -13.47796 -13.35663 -12.82162 -12.37802 -12.15339 -12.11675 -11.84042 -11.77191 -11.56226 -11.15964 -10.95306 -10.88202 -10.85260 -10.59685 -10.46195 -10.11247 -9.89168 -9.83443 -9.75792 -9.57987 -9.17527 -8.75201 -8.66815 -8.54266 -6.89809 -5.67418 -3.10353 -0.08242 0.33781 1.59227 2.20079 3.21012 3.23069 3.38509 3.43658 3.45433 3.82137 3.89402 4.23199 4.32715 4.44838 4.49354 4.58668 4.68824 4.79985 4.86690 5.10849 5.25736 5.39975 5.40876 5.51979 5.55640 5.58836 5.61822 5.68467 5.79441 5.92389 5.98701 6.10108 6.13416 6.22184 6.28635 6.32326 6.41139 6.50168 6.58199 6.69025 6.84317 7.07692 7.49438 7.52000 7.60534 7.64600 7.83173 8.28244 8.33747 9.18564 9.79451 10.43133 11.35939 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.002324 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.752802 B =12046.494942 C =12380.221015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.096 0.904 6 N -0.708 5.708 7 C 0.556 3.444 8 O -0.539 6.539 9 C -0.127 4.127 10 C -0.073 4.073 11 C -0.098 4.098 12 C 0.141 3.859 13 N -0.478 5.478 14 C 0.138 3.862 15 C -0.182 4.182 16 C -0.045 4.045 17 C -0.114 4.114 18 C -0.028 4.028 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.398 0.602 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.160 0.840 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.110 0.890 43 H 0.015 0.985 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 9.151 -23.491 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.030 3.970 5 H 0.114 0.886 6 N -0.358 5.358 7 C 0.342 3.658 8 O -0.417 6.417 9 C -0.130 4.130 10 C -0.094 4.094 11 C -0.116 4.116 12 C 0.020 3.980 13 N -0.186 5.186 14 C -0.035 4.035 15 C -0.202 4.202 16 C -0.071 4.071 17 C -0.116 4.116 18 C -0.048 4.048 19 C -0.193 4.193 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.349 4.349 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.233 0.767 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.033 0.967 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.638 9.094 -23.054 24.837 hybrid contribution -0.346 -0.190 0.721 0.821 sum 1.292 8.905 -22.333 24.078 Atomic orbital electron populations 1.22245 0.97841 1.01484 0.99943 1.20995 0.92656 0.94766 0.86913 0.94676 1.22222 0.97812 0.90737 0.86272 0.88621 1.46008 1.67481 1.16352 1.05938 1.18120 0.77997 0.87083 0.82591 1.90774 1.48428 1.20139 1.82350 1.20059 1.04103 0.94680 0.94159 1.21021 0.96127 0.91992 1.00235 1.20687 1.00361 1.00637 0.89945 1.19014 0.95860 0.89214 0.93931 1.68079 1.14197 1.34885 1.01432 1.23039 0.92876 0.94948 0.92602 1.21906 1.02145 0.94895 1.01261 1.21589 0.94092 1.00020 0.91431 1.18815 1.03036 0.95132 0.94576 1.21456 0.93332 0.99229 0.90762 1.23407 0.96701 0.99355 0.99814 1.21957 0.97401 0.88408 0.89475 1.44485 1.59254 1.28214 1.00051 1.19018 1.27199 1.08174 0.80472 0.90441 1.24795 1.00352 0.97388 0.98076 1.69793 1.39101 1.17792 1.30214 0.86080 0.77253 0.77718 0.84465 1.21643 1.21671 1.20713 0.92885 0.92677 0.94324 0.76678 0.84635 0.84058 0.82254 0.84285 0.83976 0.83617 0.91943 0.91917 0.87281 0.96704 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.13 37.15 0.34 -2.52 16 2 C 0.15 3.05 3.48 -66.96 -0.23 2.82 16 3 H 0.04 0.67 7.71 -51.92 -0.40 0.27 16 4 C 0.13 2.40 2.85 -66.09 -0.19 2.21 16 5 H 0.10 1.85 7.25 -51.93 -0.38 1.47 16 6 N -0.71 -10.29 5.13 -52.99 -0.27 -10.57 16 7 C 0.56 8.32 7.77 -12.37 -0.10 8.22 16 8 O -0.54 -9.85 15.95 5.31 0.08 -9.77 16 9 C -0.13 -1.53 5.87 -104.99 -0.62 -2.15 16 10 C -0.07 -0.74 9.44 -39.59 -0.37 -1.11 16 11 C -0.10 -0.98 9.95 -39.54 -0.39 -1.37 16 12 C 0.14 1.56 6.61 -84.78 -0.56 1.00 16 13 N -0.48 -5.03 10.33 -10.92 -0.11 -5.15 16 14 C 0.14 1.04 11.15 -17.46 -0.19 0.84 16 15 C -0.18 -1.15 10.03 -39.78 -0.40 -1.55 16 16 C -0.05 -0.35 9.89 -39.18 -0.39 -0.74 16 17 C -0.11 -1.17 5.74 -106.82 -0.61 -1.79 16 18 C -0.03 -0.31 9.35 -38.74 -0.36 -0.68 16 19 C -0.15 -3.00 6.77 -24.59 -0.17 -3.16 16 20 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 21 N -0.59 -14.61 3.13 -162.57 -0.51 -15.12 16 22 C -0.22 -5.92 9.89 -15.06 -0.15 -6.07 16 23 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 25 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16 26 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 4.77 6.35 -40.82 -0.26 4.51 16 34 H 0.14 1.08 6.35 -52.49 -0.33 0.74 16 35 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.15 1.56 7.62 -52.49 -0.40 1.16 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.11 2.94 5.88 -51.92 -0.31 2.64 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -32.72 363.05 -10.15 -42.87 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.84 Total: 4.19 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -4.50 Total: -2.77 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.33 Total: -56.70 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.72 -10.15 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088834966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.306 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds