Wall clock time and date at job start Tue Mar 31 2020 14:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.87402 * 2 1 4 4 C 1.54323 * 109.88257 * 238.98592 * 2 1 3 5 5 H 1.09001 * 110.71692 * 336.93032 * 4 2 1 6 6 N 1.46505 * 110.72298 * 100.02393 * 4 2 1 7 7 C 1.34775 * 120.00303 * 205.00538 * 6 4 2 8 8 O 1.21563 * 119.99539 * 359.97438 * 7 6 4 9 9 C 1.47765 * 120.00237 * 180.02562 * 7 6 4 10 10 C 1.40635 * 119.80277 * 359.97173 * 9 7 6 11 11 C 1.35698 * 120.92152 * 180.02562 * 10 9 7 12 12 C 1.40759 * 120.11055 * 359.95868 * 11 10 9 13 13 N 1.33654 * 120.83317 * 180.02562 * 12 11 10 14 14 C 1.31118 * 121.39598 * 179.97438 * 13 12 11 15 15 C 1.39308 * 121.76897 * 0.03649 * 14 13 12 16 16 C 1.36580 * 119.90459 * 359.94121 * 15 14 13 17 17 C 1.40893 * 118.16059 * 0.03613 * 16 15 14 18 18 C 1.38545 * 119.80747 * 179.97438 * 9 7 6 19 19 C 1.55156 * 102.94255 * 218.38828 * 4 2 1 20 20 C 1.54902 * 101.58106 * 35.50164 * 19 4 2 21 21 N 1.47022 * 109.88716 * 121.17423 * 2 1 3 22 22 C 1.36934 * 125.64610 * 298.32776 * 21 2 1 23 23 H 1.07997 * 120.00598 * 359.97438 * 22 21 2 24 24 C 1.38818 * 119.99625 * 179.97438 * 22 21 2 25 25 N 1.31618 * 120.00074 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99970 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47587 * 89.99692 * 26 24 22 28 28 H 1.48500 * 109.47092 * 209.99738 * 26 24 22 29 29 H 1.48510 * 109.46825 * 329.99658 * 26 24 22 30 30 H 1.09004 * 109.47131 * 181.01877 * 1 2 3 31 31 H 1.09003 * 109.47308 * 301.01184 * 1 2 3 32 32 H 1.08997 * 109.47602 * 61.01714 * 1 2 3 33 33 H 0.97005 * 119.99291 * 24.99770 * 6 4 2 34 34 H 1.07998 * 119.53854 * 0.04547 * 10 9 7 35 35 H 1.08004 * 119.94459 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.11466 * 179.97438 * 14 13 12 37 37 H 1.08005 * 120.04937 * 179.97438 * 15 14 13 38 38 H 1.08004 * 120.92470 * 180.02562 * 16 15 14 39 39 H 1.08000 * 120.29798 * 359.97438 * 18 9 7 40 40 H 1.08997 * 111.00494 * 153.57513 * 19 4 2 41 41 H 1.09004 * 111.00410 * 277.42165 * 19 4 2 42 42 H 1.09008 * 110.36651 * 204.15423 * 20 19 4 43 43 H 1.09002 * 110.37112 * 81.83338 * 20 19 4 44 44 H 0.97001 * 119.99764 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3038 -1.4413 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.4580 -0.1832 -3.5796 8 8 2.1284 -1.3143 -3.8793 9 6 2.8626 0.7718 -4.6321 10 6 3.2436 2.0791 -4.2807 11 6 3.6187 2.9748 -5.2286 12 6 3.6318 2.6025 -6.5860 13 7 3.9992 3.4728 -7.5315 14 6 4.0159 3.1377 -8.7990 15 6 3.6524 1.8622 -9.2253 16 6 3.2667 0.9230 -8.3117 17 6 3.2504 1.2867 -6.9506 18 6 2.8643 0.3741 -5.9592 19 6 3.2876 -1.5132 -0.6946 20 6 2.8145 -1.8804 0.7340 21 7 2.0301 -0.7157 1.1829 22 6 1.8050 -0.3590 2.4857 23 1 1.2148 0.5168 2.7117 24 6 2.3354 -1.1233 3.5160 25 7 3.0543 -2.1909 3.2407 26 14 2.0279 -0.6373 5.2932 27 1 0.7874 -1.2937 5.7785 28 1 3.1761 -1.0688 6.1302 29 1 1.8757 0.8372 5.3839 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3634 0.5295 0.8808 32 1 -0.3634 0.4979 -0.8989 33 1 2.7186 1.1018 -2.0480 34 1 3.2379 2.3743 -3.2418 35 1 3.9087 3.9746 -4.9409 36 1 4.3187 3.8704 -9.5323 37 1 3.6759 1.6162 -10.2767 38 1 2.9819 -0.0709 -8.6239 39 1 2.5718 -0.6303 -6.2274 40 1 3.4851 -2.4092 -1.2830 41 1 4.1654 -0.8679 -0.6617 42 1 3.6717 -2.0357 1.3893 43 1 2.1887 -2.7725 0.7089 44 1 3.4252 -2.7247 3.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088834966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:13 Heat of formation + Delta-G solvation = 28.344281 kcal Electronic energy + Delta-G solvation = -26411.301385 eV Core-core repulsion = 22714.300333 eV Total energy + Delta-G solvation = -3697.001052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95521 -40.95620 -39.29140 -37.67952 -35.70284 -34.50982 -33.90763 -32.12620 -31.77251 -31.10074 -30.31589 -26.97553 -25.90830 -25.25819 -24.85002 -23.16791 -22.38622 -21.78877 -21.46316 -19.40265 -18.78229 -18.70095 -17.97193 -17.28133 -16.85374 -16.60789 -16.07394 -15.78881 -15.59228 -15.43118 -15.28813 -15.06514 -14.86695 -14.44768 -14.35317 -14.02108 -13.97058 -13.73768 -13.24546 -13.09910 -12.93235 -12.77939 -12.69067 -12.60728 -12.47077 -12.23980 -12.12070 -11.97711 -11.60125 -11.57585 -11.44841 -11.09120 -10.72748 -10.51374 -10.13741 -9.81711 -9.33999 -8.89576 -7.74217 -5.19138 -0.81165 -0.34523 0.87068 1.39346 1.48961 1.50365 1.58776 2.01104 2.27739 2.52550 3.08251 3.26781 3.36294 3.51422 3.55386 3.67038 3.75158 3.84228 3.94653 3.97018 4.01056 4.05336 4.19734 4.30908 4.49798 4.52366 4.61985 4.65372 4.76912 4.80558 4.87595 4.92387 4.98054 5.02521 5.04668 5.11088 5.19201 5.27004 5.34124 5.48717 5.51018 5.59649 5.60554 5.75503 5.80728 6.31132 6.48217 6.88546 7.11771 7.13066 7.79461 8.42969 9.27730 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.002324 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.752802 B =12046.494942 C =12380.221015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.054 0.946 4 C 0.152 3.848 5 H 0.083 0.917 6 N -0.697 5.697 7 C 0.559 3.441 8 O -0.577 6.577 9 C -0.145 4.145 10 C -0.072 4.072 11 C -0.103 4.103 12 C 0.124 3.876 13 N -0.509 5.509 14 C 0.139 3.861 15 C -0.172 4.172 16 C -0.053 4.053 17 C -0.130 4.130 18 C -0.027 4.027 19 C -0.139 4.139 20 C 0.157 3.843 21 N -0.613 5.613 22 C -0.225 4.225 23 H 0.086 0.914 24 C -0.070 4.070 25 N -0.951 5.951 26 Si 0.978 3.022 27 H -0.291 1.291 28 H -0.296 1.296 29 H -0.267 1.267 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.413 0.587 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.193 0.807 37 H 0.177 0.823 38 H 0.165 0.835 39 H 0.145 0.855 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.078 0.922 43 H -0.015 1.015 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 11.427 -25.945 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.072 0.928 4 C 0.046 3.954 5 H 0.101 0.899 6 N -0.349 5.349 7 C 0.348 3.652 8 O -0.458 6.458 9 C -0.148 4.148 10 C -0.092 4.092 11 C -0.121 4.121 12 C 0.003 3.997 13 N -0.217 5.217 14 C -0.033 4.033 15 C -0.191 4.191 16 C -0.079 4.079 17 C -0.132 4.132 18 C -0.047 4.047 19 C -0.178 4.178 20 C 0.032 3.968 21 N -0.338 5.338 22 C -0.354 4.354 23 H 0.104 0.896 24 C -0.262 4.262 25 N -0.601 5.601 26 Si 0.807 3.193 27 H -0.218 1.218 28 H -0.223 1.223 29 H -0.191 1.191 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.251 0.749 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.210 0.790 37 H 0.195 0.805 38 H 0.182 0.818 39 H 0.163 0.837 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.003 0.997 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.579 11.429 -25.538 28.023 hybrid contribution -0.316 -0.844 1.246 1.537 sum 1.263 10.585 -24.292 26.528 Atomic orbital electron populations 1.22132 0.96558 1.00753 1.01211 1.21203 0.93542 0.95147 0.85768 0.92843 1.21777 0.96402 0.90785 0.86440 0.89894 1.45769 1.67424 1.16450 1.05226 1.18516 0.76837 0.86970 0.82858 1.90753 1.50191 1.21945 1.82885 1.19847 1.06431 0.95023 0.93488 1.21114 0.95806 0.91026 1.01252 1.20885 1.00187 1.01205 0.89847 1.19292 0.96099 0.89703 0.94613 1.68129 1.15713 1.35305 1.02598 1.23741 0.91006 0.96251 0.92254 1.22327 1.00019 0.93844 1.02893 1.21952 0.93879 1.01545 0.90516 1.18978 1.03677 0.94882 0.95676 1.21545 0.92844 0.99411 0.90864 1.23209 0.97647 1.00007 0.96987 1.21675 0.95752 0.87823 0.91582 1.44717 1.59726 1.28562 1.00842 1.19391 1.26296 1.08035 0.81686 0.89630 1.25615 1.00897 0.97775 1.01934 1.70041 1.40422 1.18925 1.30718 0.85076 0.76458 0.78032 0.79751 1.21802 1.22317 1.19126 0.94558 0.93262 0.91185 0.74898 0.82768 0.82744 0.79042 0.80546 0.81774 0.83746 0.91533 0.91024 0.90395 0.99657 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.13 71.98 0.66 -4.59 16 2 C 0.15 5.79 3.48 45.34 0.16 5.95 16 3 H 0.05 1.91 7.71 -2.38 -0.02 1.89 16 4 C 0.15 5.37 2.85 46.18 0.13 5.50 16 5 H 0.08 3.21 7.25 -2.39 -0.02 3.19 16 6 N -0.70 -19.39 5.13 -439.85 -2.25 -21.64 16 7 C 0.56 16.39 7.77 86.76 0.67 17.06 16 8 O -0.58 -21.16 15.95 -3.91 -0.06 -21.22 16 9 C -0.14 -3.38 5.87 -20.10 -0.12 -3.50 16 10 C -0.07 -1.34 9.44 22.27 0.21 -1.13 16 11 C -0.10 -1.93 9.95 22.30 0.22 -1.70 16 12 C 0.12 2.56 6.61 40.35 0.27 2.83 16 13 N -0.51 -9.71 10.33 -188.46 -1.95 -11.66 16 14 C 0.14 1.65 11.15 85.06 0.95 2.60 16 15 C -0.17 -1.55 10.03 22.14 0.22 -1.32 16 16 C -0.05 -0.68 9.89 22.53 0.22 -0.46 16 17 C -0.13 -2.51 5.74 -21.29 -0.12 -2.63 16 18 C -0.03 -0.58 9.35 22.81 0.21 -0.37 16 19 C -0.14 -5.48 6.77 31.98 0.22 -5.27 16 20 C 0.16 7.85 5.89 86.85 0.51 8.37 16 21 N -0.61 -30.43 3.13 -668.26 -2.09 -32.52 16 22 C -0.23 -12.15 9.89 84.04 0.83 -11.32 16 23 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 24 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 25 N -0.95 -56.49 10.09 21.65 0.22 -56.28 16 26 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.79 8.04 -2.39 -0.02 1.77 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.41 9.01 6.35 -92.70 -0.59 8.42 16 34 H 0.15 2.12 6.35 -2.91 -0.02 2.11 16 35 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 38 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.14 3.06 7.62 -2.91 -0.02 3.04 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 42 H 0.08 4.41 5.88 -2.38 -0.01 4.39 16 43 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 44 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -73.18 363.05 2.04 -71.14 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.44 Total: 18.42 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.71 Total: 6.56 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -6.07 Total: -122.10 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.18 2.04 -71.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088834966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.485 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds