Wall clock time and date at job start Tue Mar 31 2020 14:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.00100 * 2 1 4 4 C 1.54337 * 109.99371 * 238.95814 * 2 1 3 5 5 H 1.09001 * 110.51271 * 336.98684 * 4 2 1 6 6 N 1.46502 * 110.99832 * 100.13091 * 4 2 1 7 7 C 1.34780 * 119.99712 * 200.24066 * 6 4 2 8 8 O 1.21558 * 120.00021 * 359.97438 * 7 6 4 9 9 C 1.47774 * 119.99825 * 180.02562 * 7 6 4 10 10 C 1.40650 * 119.70353 * 359.97438 * 9 7 6 11 11 C 1.35850 * 120.88281 * 179.97438 * 10 9 7 12 12 C 1.40395 * 119.84062 * 0.02562 * 11 10 9 13 13 C 1.40632 * 121.97575 * 180.02562 * 12 11 10 14 14 C 1.36223 * 118.73146 * 179.97438 * 13 12 11 15 15 N 1.32600 * 121.89923 * 0.02562 * 14 13 12 16 16 C 1.31238 * 122.73896 * 359.97438 * 15 14 13 17 17 C 1.40548 * 119.89059 * 359.97438 * 16 15 14 18 18 C 1.38564 * 119.70020 * 179.73019 * 9 7 6 19 19 C 1.55148 * 103.02190 * 218.66816 * 4 2 1 20 20 C 1.54910 * 101.58711 * 35.30761 * 19 4 2 21 21 N 1.47020 * 109.88119 * 121.09360 * 2 1 3 22 22 C 1.36938 * 125.64933 * 298.39298 * 21 2 1 23 23 H 1.07995 * 119.99980 * 344.50388 * 22 21 2 24 24 C 1.38822 * 119.99853 * 164.50109 * 22 21 2 25 25 N 1.31618 * 119.99824 * 350.16502 * 24 22 21 26 26 Si 1.86794 * 119.99705 * 170.16290 * 24 22 21 27 27 H 1.48494 * 109.47306 * 265.16101 * 26 24 22 28 28 H 1.48502 * 109.47386 * 25.16270 * 26 24 22 29 29 H 1.48501 * 109.47251 * 145.16065 * 26 24 22 30 30 H 1.09008 * 109.47051 * 300.36249 * 1 2 3 31 31 H 1.09000 * 109.46705 * 60.35765 * 1 2 3 32 32 H 1.09000 * 109.47255 * 180.35853 * 1 2 3 33 33 H 0.97001 * 120.00276 * 20.23096 * 6 4 2 34 34 H 1.08005 * 119.56033 * 0.02562 * 10 9 7 35 35 H 1.07994 * 120.07924 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.63595 * 359.95115 * 13 12 11 37 37 H 1.08004 * 119.05008 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.05221 * 180.02562 * 16 15 14 39 39 H 1.08001 * 120.34276 * 359.97438 * 18 9 7 40 40 H 1.09005 * 111.00654 * 277.23270 * 19 4 2 41 41 H 1.08999 * 111.03821 * 153.39711 * 19 4 2 42 42 H 1.08994 * 110.36926 * 204.15150 * 20 19 4 43 43 H 1.09000 * 110.45834 * 81.86877 * 20 19 4 44 44 H 0.97000 * 119.99437 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3052 -1.4406 -1.6196 6 7 2.4632 0.1937 -2.2892 7 6 2.5609 -0.2211 -3.5678 8 8 2.3130 -1.3765 -3.8526 9 6 2.9706 0.7286 -4.6233 10 6 3.2565 2.0639 -4.2867 11 6 3.6357 2.9569 -5.2377 12 6 3.7449 2.5478 -6.5762 13 6 4.1339 3.4341 -7.5965 14 6 4.2188 2.9664 -8.8731 15 7 3.9454 1.7049 -9.1768 16 6 3.5767 0.8224 -8.2781 17 6 3.4592 1.2026 -6.9301 18 6 3.0744 0.2942 -5.9350 19 6 3.2863 -1.5184 -0.6914 20 6 2.8099 -1.8826 0.7370 21 7 2.0299 -0.7140 1.1839 22 6 1.8037 -0.3563 2.4863 23 1 1.4373 0.6326 2.7188 24 6 2.0454 -1.2649 3.5076 25 7 2.3039 -2.5233 3.2214 26 14 2.0038 -0.7014 5.2881 27 1 3.3804 -0.3683 5.7342 28 1 1.1404 0.5009 5.4068 29 1 1.4574 -1.7891 6.1389 30 1 -0.3633 0.5195 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 2.6613 1.1157 -2.0619 34 1 3.1744 2.3835 -3.2583 35 1 3.8525 3.9790 -4.9646 36 1 4.3606 4.4660 -7.3722 37 1 4.5167 3.6427 -9.6607 38 1 3.3648 -0.1945 -8.5738 39 1 2.8581 -0.7332 -6.1882 40 1 4.1669 -0.8769 -0.6578 41 1 3.4813 -2.4156 -1.2788 42 1 3.6655 -2.0412 1.3933 43 1 2.1805 -2.7722 0.7134 44 1 2.4731 -3.1581 3.9351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088961046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:22 Heat of formation + Delta-G solvation = 43.523752 kcal Electronic energy + Delta-G solvation = -26396.973093 eV Core-core repulsion = 22700.630272 eV Total energy + Delta-G solvation = -3696.342821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22579 -39.80682 -37.86890 -37.03393 -34.18342 -33.33355 -32.30437 -31.38951 -30.41912 -30.07199 -28.64766 -25.64639 -24.30938 -24.10493 -23.97867 -22.57825 -21.16181 -20.26034 -19.90047 -18.28767 -18.01628 -17.11225 -16.71678 -16.00685 -15.86429 -15.40114 -14.95193 -14.72117 -14.40461 -14.35599 -14.22585 -13.95948 -13.86525 -13.56614 -13.33663 -12.82552 -12.40113 -12.27536 -12.13786 -12.05708 -11.64061 -11.56632 -11.13937 -10.96855 -10.81730 -10.62091 -10.56216 -10.43057 -10.08200 -9.99668 -9.90420 -9.75857 -9.68504 -9.49790 -8.77491 -8.61648 -8.43647 -6.84209 -5.79631 -3.15244 -0.11901 0.35847 1.46030 2.30885 3.17344 3.22624 3.36617 3.42335 3.44243 3.75970 4.02092 4.15003 4.29848 4.38656 4.45254 4.57631 4.65818 4.78688 4.84280 5.19170 5.22593 5.31260 5.38786 5.40708 5.46910 5.53459 5.56407 5.60311 5.77844 5.91122 5.96136 6.08927 6.17981 6.22443 6.27466 6.31945 6.34975 6.46711 6.58333 6.65305 6.86735 7.08018 7.40105 7.56221 7.57601 7.62536 7.73243 8.20540 8.27219 9.13333 9.75419 10.43743 11.33362 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.002313 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.820877 B =12103.939156 C =12486.411345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.136 3.864 5 H 0.094 0.906 6 N -0.708 5.708 7 C 0.555 3.445 8 O -0.536 6.536 9 C -0.130 4.130 10 C -0.070 4.070 11 C -0.118 4.118 12 C -0.009 4.009 13 C -0.160 4.160 14 C 0.082 3.918 15 N -0.493 5.493 16 C 0.159 3.841 17 C -0.123 4.123 18 C -0.018 4.018 19 C -0.154 4.154 20 C 0.175 3.825 21 N -0.592 5.592 22 C -0.231 4.231 23 H 0.075 0.925 24 C -0.003 4.003 25 N -0.913 5.913 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.280 1.280 29 H -0.291 1.291 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 11.719 -20.731 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.052 0.948 4 C 0.032 3.968 5 H 0.112 0.888 6 N -0.359 5.359 7 C 0.341 3.659 8 O -0.414 6.414 9 C -0.133 4.133 10 C -0.089 4.089 11 C -0.136 4.136 12 C -0.015 4.015 13 C -0.180 4.180 14 C -0.061 4.061 15 N -0.201 5.201 16 C -0.013 4.013 17 C -0.126 4.126 18 C -0.039 4.039 19 C -0.193 4.193 20 C 0.050 3.950 21 N -0.317 5.317 22 C -0.359 4.359 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.559 5.559 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.205 1.205 29 H -0.217 1.217 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.232 0.768 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.167 0.833 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.309 10.674 -21.595 24.315 hybrid contribution -0.024 1.032 2.082 2.323 sum 3.284 11.705 -19.513 22.990 Atomic orbital electron populations 1.22225 0.97694 1.01560 0.99897 1.21027 0.92624 0.94768 0.86891 0.94795 1.22164 0.97515 0.90823 0.86336 0.88776 1.46003 1.68623 1.14284 1.06972 1.18131 0.77847 0.87423 0.82492 1.90783 1.49928 1.18443 1.82240 1.20067 1.04587 0.94294 0.94401 1.21106 0.95596 0.92069 1.00154 1.20864 1.01161 1.00324 0.91248 1.18302 0.95920 0.92804 0.94447 1.21936 1.01846 1.00617 0.93572 1.22263 0.96057 0.92137 0.95627 1.67490 1.11664 1.03011 1.37925 1.23346 0.91479 0.99127 0.87332 1.19015 1.03673 0.94095 0.95775 1.21470 0.92061 0.99708 0.90630 1.23378 0.96772 0.99538 0.99644 1.21345 0.95275 0.89841 0.88578 1.44479 1.58142 1.29006 1.00091 1.18932 1.39941 0.96537 0.80493 0.90745 1.24910 1.01986 0.95073 0.98119 1.69959 1.53224 1.01545 1.31128 0.86139 0.77644 0.77495 0.84684 1.21589 1.20545 1.21743 0.92527 0.94522 0.92822 0.76775 0.84918 0.84488 0.84255 0.82897 0.81533 0.83267 0.92017 0.91673 0.91962 0.94749 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.14 37.16 0.34 -2.51 16 2 C 0.15 3.00 3.49 -66.95 -0.23 2.77 16 3 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 4 C 0.14 2.39 2.76 -66.09 -0.18 2.20 16 5 H 0.09 1.79 7.39 -51.93 -0.38 1.41 16 6 N -0.71 -9.91 5.16 -52.99 -0.27 -10.19 16 7 C 0.55 8.00 7.76 -12.36 -0.10 7.90 16 8 O -0.54 -9.57 16.02 5.31 0.09 -9.49 16 9 C -0.13 -1.48 5.87 -104.97 -0.62 -2.09 16 10 C -0.07 -0.62 9.44 -39.53 -0.37 -1.00 16 11 C -0.12 -0.94 9.77 -39.63 -0.39 -1.33 16 12 C -0.01 -0.09 5.75 -106.74 -0.61 -0.70 16 13 C -0.16 -1.18 9.87 -39.40 -0.39 -1.57 16 14 C 0.08 0.65 11.07 -17.95 -0.20 0.46 16 15 N -0.49 -4.83 10.30 -13.11 -0.14 -4.97 16 16 C 0.16 1.42 11.05 -16.94 -0.19 1.23 16 17 C -0.12 -1.20 5.74 -106.88 -0.61 -1.81 16 18 C -0.02 -0.19 9.37 -38.75 -0.36 -0.55 16 19 C -0.15 -2.93 6.77 -24.59 -0.17 -3.10 16 20 C 0.17 4.14 5.37 -2.52 -0.01 4.13 16 21 N -0.59 -14.37 3.12 -162.56 -0.51 -14.88 16 22 C -0.23 -6.16 9.81 -15.05 -0.15 -6.30 16 23 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 24 C 0.00 -0.09 5.38 -17.43 -0.09 -0.18 16 25 N -0.91 -26.32 10.92 55.49 0.61 -25.71 16 26 Si 0.91 21.57 29.56 -169.99 -5.03 16.54 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.06 1.09 8.02 -51.92 -0.42 0.67 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.40 4.48 6.31 -40.82 -0.26 4.23 16 34 H 0.13 0.93 6.34 -52.48 -0.33 0.60 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.15 1.48 7.61 -52.49 -0.40 1.08 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.62 7.31 -51.93 -0.38 1.24 16 43 H 0.03 0.90 7.95 -51.93 -0.41 0.48 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -32.66 364.39 -10.01 -42.67 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.91 Total: 2.98 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.33 Total: -2.45 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.31 Total: -55.74 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.66 -10.01 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088961046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.194 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds