Wall clock time and date at job start Tue Mar 31 2020 14:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.00100 * 2 1 4 4 C 1.54337 * 109.99371 * 238.95814 * 2 1 3 5 5 H 1.09001 * 110.51271 * 336.98684 * 4 2 1 6 6 N 1.46502 * 110.99832 * 100.13091 * 4 2 1 7 7 C 1.34780 * 119.99712 * 200.24066 * 6 4 2 8 8 O 1.21558 * 120.00021 * 359.97438 * 7 6 4 9 9 C 1.47774 * 119.99825 * 180.02562 * 7 6 4 10 10 C 1.40650 * 119.70353 * 359.97438 * 9 7 6 11 11 C 1.35850 * 120.88281 * 179.97438 * 10 9 7 12 12 C 1.40395 * 119.84062 * 0.02562 * 11 10 9 13 13 C 1.40632 * 121.97575 * 180.02562 * 12 11 10 14 14 C 1.36223 * 118.73146 * 179.97438 * 13 12 11 15 15 N 1.32600 * 121.89923 * 0.02562 * 14 13 12 16 16 C 1.31238 * 122.73896 * 359.97438 * 15 14 13 17 17 C 1.40548 * 119.89059 * 359.97438 * 16 15 14 18 18 C 1.38564 * 119.70020 * 179.73019 * 9 7 6 19 19 C 1.55148 * 103.02190 * 218.66816 * 4 2 1 20 20 C 1.54910 * 101.58711 * 35.30761 * 19 4 2 21 21 N 1.47020 * 109.88119 * 121.09360 * 2 1 3 22 22 C 1.36938 * 125.64933 * 298.39298 * 21 2 1 23 23 H 1.07995 * 119.99980 * 344.50388 * 22 21 2 24 24 C 1.38822 * 119.99853 * 164.50109 * 22 21 2 25 25 N 1.31618 * 119.99824 * 350.16502 * 24 22 21 26 26 Si 1.86794 * 119.99705 * 170.16290 * 24 22 21 27 27 H 1.48494 * 109.47306 * 265.16101 * 26 24 22 28 28 H 1.48502 * 109.47386 * 25.16270 * 26 24 22 29 29 H 1.48501 * 109.47251 * 145.16065 * 26 24 22 30 30 H 1.09008 * 109.47051 * 300.36249 * 1 2 3 31 31 H 1.09000 * 109.46705 * 60.35765 * 1 2 3 32 32 H 1.09000 * 109.47255 * 180.35853 * 1 2 3 33 33 H 0.97001 * 120.00276 * 20.23096 * 6 4 2 34 34 H 1.08005 * 119.56033 * 0.02562 * 10 9 7 35 35 H 1.07994 * 120.07924 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.63595 * 359.95115 * 13 12 11 37 37 H 1.08004 * 119.05008 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.05221 * 180.02562 * 16 15 14 39 39 H 1.08001 * 120.34276 * 359.97438 * 18 9 7 40 40 H 1.09005 * 111.00654 * 277.23270 * 19 4 2 41 41 H 1.08999 * 111.03821 * 153.39711 * 19 4 2 42 42 H 1.08994 * 110.36926 * 204.15150 * 20 19 4 43 43 H 1.09000 * 110.45834 * 81.86877 * 20 19 4 44 44 H 0.97000 * 119.99437 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3052 -1.4406 -1.6196 6 7 2.4632 0.1937 -2.2892 7 6 2.5609 -0.2211 -3.5678 8 8 2.3130 -1.3765 -3.8526 9 6 2.9706 0.7286 -4.6233 10 6 3.2565 2.0639 -4.2867 11 6 3.6357 2.9569 -5.2377 12 6 3.7449 2.5478 -6.5762 13 6 4.1339 3.4341 -7.5965 14 6 4.2188 2.9664 -8.8731 15 7 3.9454 1.7049 -9.1768 16 6 3.5767 0.8224 -8.2781 17 6 3.4592 1.2026 -6.9301 18 6 3.0744 0.2942 -5.9350 19 6 3.2863 -1.5184 -0.6914 20 6 2.8099 -1.8826 0.7370 21 7 2.0299 -0.7140 1.1839 22 6 1.8037 -0.3563 2.4863 23 1 1.4373 0.6326 2.7188 24 6 2.0454 -1.2649 3.5076 25 7 2.3039 -2.5233 3.2214 26 14 2.0038 -0.7014 5.2881 27 1 3.3804 -0.3683 5.7342 28 1 1.1404 0.5009 5.4068 29 1 1.4574 -1.7891 6.1389 30 1 -0.3633 0.5195 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 2.6613 1.1157 -2.0619 34 1 3.1744 2.3835 -3.2583 35 1 3.8525 3.9790 -4.9646 36 1 4.3606 4.4660 -7.3722 37 1 4.5167 3.6427 -9.6607 38 1 3.3648 -0.1945 -8.5738 39 1 2.8581 -0.7332 -6.1882 40 1 4.1669 -0.8769 -0.6578 41 1 3.4813 -2.4156 -1.2788 42 1 3.6655 -2.0412 1.3933 43 1 2.1805 -2.7722 0.7134 44 1 2.4731 -3.1581 3.9351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088961046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:21 Heat of formation + Delta-G solvation = 23.510667 kcal Electronic energy + Delta-G solvation = -26397.840925 eV Core-core repulsion = 22700.630272 eV Total energy + Delta-G solvation = -3697.210653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.94468 -40.95030 -39.29926 -37.92224 -35.67632 -34.01415 -33.94163 -32.34507 -32.03765 -30.83235 -30.31156 -26.95167 -25.90332 -25.20550 -24.92869 -23.27194 -22.42319 -21.73550 -21.46217 -19.30110 -18.72996 -18.66202 -17.87395 -17.15281 -16.84204 -16.59162 -16.08084 -16.01116 -15.72060 -15.59181 -15.18290 -15.02859 -14.77358 -14.51332 -14.34727 -14.22873 -14.00901 -13.85752 -13.21004 -13.06295 -12.90808 -12.84732 -12.78238 -12.58939 -12.30632 -12.26527 -12.07260 -11.93204 -11.66049 -11.53477 -11.22614 -11.12230 -10.68082 -10.49879 -10.25614 -10.02867 -9.09930 -8.83574 -7.86568 -5.23703 -0.80457 -0.32040 0.78418 1.48325 1.49150 1.51192 1.58308 2.01336 2.33030 2.52056 3.06690 3.34123 3.44734 3.47300 3.59001 3.66268 3.69052 3.82456 3.88455 3.91755 4.02038 4.07295 4.20651 4.32786 4.49953 4.61842 4.62472 4.66240 4.69351 4.80479 4.81429 4.89053 4.94930 4.97838 5.04532 5.11959 5.20747 5.32443 5.36784 5.44261 5.56305 5.60961 5.63712 5.69284 5.72764 6.21874 6.50058 6.96207 7.07834 7.15480 7.76350 8.44192 9.25931 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.002313 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.820877 B =12103.939156 C =12486.411345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.059 0.941 4 C 0.153 3.847 5 H 0.078 0.922 6 N -0.697 5.697 7 C 0.557 3.443 8 O -0.577 6.577 9 C -0.144 4.144 10 C -0.075 4.075 11 C -0.107 4.107 12 C -0.023 4.023 13 C -0.153 4.153 14 C 0.071 3.929 15 N -0.515 5.515 16 C 0.149 3.851 17 C -0.136 4.136 18 C -0.022 4.022 19 C -0.138 4.138 20 C 0.183 3.817 21 N -0.610 5.610 22 C -0.232 4.232 23 H 0.084 0.916 24 C -0.064 4.064 25 N -0.949 5.949 26 Si 0.975 3.025 27 H -0.288 1.288 28 H -0.264 1.264 29 H -0.300 1.300 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.413 0.587 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.144 0.856 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.030 0.970 43 H -0.001 1.001 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 15.421 -21.984 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.077 0.923 4 C 0.048 3.952 5 H 0.097 0.903 6 N -0.348 5.348 7 C 0.345 3.655 8 O -0.458 6.458 9 C -0.147 4.147 10 C -0.095 4.095 11 C -0.125 4.125 12 C -0.028 4.028 13 C -0.172 4.172 14 C -0.072 4.072 15 N -0.223 5.223 16 C -0.022 4.022 17 C -0.138 4.138 18 C -0.043 4.043 19 C -0.178 4.178 20 C 0.057 3.943 21 N -0.336 5.336 22 C -0.361 4.361 23 H 0.101 0.899 24 C -0.258 4.258 25 N -0.597 5.597 26 Si 0.804 3.196 27 H -0.215 1.215 28 H -0.189 1.189 29 H -0.227 1.227 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.252 0.748 34 H 0.171 0.829 35 H 0.188 0.812 36 H 0.190 0.810 37 H 0.195 0.805 38 H 0.199 0.801 39 H 0.162 0.838 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.017 0.983 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.708 14.443 -22.876 27.307 hybrid contribution -0.136 -0.050 2.311 2.315 sum 3.572 14.393 -20.565 25.354 Atomic orbital electron populations 1.22118 0.96753 1.00517 1.01160 1.21229 0.93286 0.95368 0.85675 0.92349 1.21703 0.96097 0.90870 0.86555 0.90348 1.45736 1.68491 1.14464 1.06128 1.18594 0.76670 0.87351 0.82836 1.90766 1.51722 1.20444 1.82836 1.19864 1.06531 0.94895 0.93422 1.21278 0.95694 0.90929 1.01560 1.21217 0.99384 1.01562 0.90296 1.18671 0.95800 0.92731 0.95641 1.22277 1.00404 1.01826 0.92715 1.22767 0.95626 0.91891 0.96906 1.67525 1.12239 1.04065 1.38487 1.23619 0.91468 0.99923 0.87191 1.19101 1.04230 0.94662 0.95789 1.21493 0.92147 0.99836 0.90841 1.23183 0.97854 1.00183 0.96555 1.21058 0.93512 0.89034 0.90706 1.44718 1.58764 1.29189 1.00915 1.19315 1.38360 0.96727 0.81738 0.89854 1.25727 1.02739 0.95230 1.02096 1.70157 1.55111 1.02644 1.31738 0.85111 0.77587 0.77133 0.79809 1.21503 1.18883 1.22667 0.93395 0.91037 0.95022 0.74783 0.82854 0.81159 0.80987 0.80463 0.80102 0.83803 0.90656 0.91498 0.95184 0.98282 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.14 71.98 0.66 -4.55 16 2 C 0.15 5.66 3.49 45.34 0.16 5.82 16 3 H 0.06 1.96 7.70 -2.39 -0.02 1.94 16 4 C 0.15 5.27 2.76 46.18 0.13 5.40 16 5 H 0.08 3.00 7.39 -2.39 -0.02 2.98 16 6 N -0.70 -18.13 5.16 -439.83 -2.27 -20.40 16 7 C 0.56 15.50 7.76 86.76 0.67 16.17 16 8 O -0.58 -20.75 16.02 -3.90 -0.06 -20.81 16 9 C -0.14 -3.05 5.87 -20.09 -0.12 -3.16 16 10 C -0.08 -1.11 9.44 22.30 0.21 -0.90 16 11 C -0.11 -1.29 9.77 22.24 0.22 -1.07 16 12 C -0.02 -0.35 5.75 -21.24 -0.12 -0.47 16 13 C -0.15 -1.72 9.87 22.38 0.22 -1.50 16 14 C 0.07 0.94 11.07 84.11 0.93 1.87 16 15 N -0.51 -9.34 10.30 -195.40 -2.01 -11.35 16 16 C 0.15 2.54 11.05 85.35 0.94 3.48 16 17 C -0.14 -2.45 5.74 -21.32 -0.12 -2.58 16 18 C -0.02 -0.45 9.37 22.81 0.21 -0.24 16 19 C -0.14 -5.29 6.77 31.98 0.22 -5.07 16 20 C 0.18 8.99 5.37 86.85 0.47 9.45 16 21 N -0.61 -29.83 3.12 -668.22 -2.09 -31.92 16 22 C -0.23 -12.41 9.81 84.04 0.82 -11.59 16 23 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 24 C -0.06 -3.58 5.38 84.86 0.46 -3.12 16 25 N -0.95 -56.80 10.92 21.65 0.24 -56.57 16 26 Si 0.97 44.80 29.56 68.60 2.03 46.83 16 27 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 29 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 30 H 0.05 1.77 8.02 -2.38 -0.02 1.75 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.41 7.99 6.31 -92.71 -0.58 7.41 16 34 H 0.15 1.52 6.34 -2.91 -0.02 1.50 16 35 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 36 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.14 2.95 7.61 -2.91 -0.02 2.93 16 40 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.03 1.64 7.31 -2.39 -0.02 1.62 16 43 H 0.00 -0.05 7.95 -2.39 -0.02 -0.07 16 44 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -73.43 364.39 2.23 -71.20 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.44 Total: 15.07 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.95 Total: 7.95 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -6.13 Total: -120.23 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.43 2.23 -71.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088961046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.711 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds