Wall clock time and date at job start Tue Mar 31 2020 13:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50699 * 120.00220 * 2 1 4 4 C 1.33118 * 119.99766 * 179.97438 * 2 1 3 5 5 F 1.35104 * 119.99881 * 185.60031 * 4 2 1 6 6 C 1.47293 * 120.00308 * 5.60615 * 4 2 1 7 7 O 1.21606 * 120.00549 * 92.73275 * 6 4 2 8 8 N 1.34780 * 120.00079 * 272.73296 * 6 4 2 9 9 C 1.46490 * 120.00564 * 180.02562 * 8 6 4 10 10 H 1.09005 * 110.88285 * 328.80652 * 9 8 6 11 11 C 1.54624 * 110.97439 * 92.62069 * 9 8 6 12 12 C 1.51276 * 104.26164 * 142.70142 * 11 9 8 13 13 O 1.21285 * 124.95040 * 164.01161 * 12 11 9 14 14 N 1.34428 * 110.11446 * 344.14500 * 12 11 9 15 15 C 1.46495 * 124.34958 * 179.43549 * 14 12 11 16 16 C 1.53500 * 114.20519 * 59.70781 * 15 14 12 17 17 N 1.47073 * 87.98107 * 220.34187 * 16 15 14 18 18 C 1.36940 * 136.05401 * 207.08798 * 17 16 15 19 19 H 1.07997 * 119.99888 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99609 * 180.27361 * 18 17 16 21 21 N 1.31615 * 120.00010 * 359.72156 * 20 18 17 22 22 Si 1.86802 * 119.99702 * 179.72387 * 20 18 17 23 23 H 1.48500 * 109.46997 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47001 * 119.99783 * 22 20 18 25 25 H 1.48504 * 109.46558 * 239.99817 * 22 20 18 26 26 C 1.47068 * 87.88449 * 27.33884 * 17 16 15 27 27 C 1.46762 * 111.29346 * 359.17351 * 14 12 11 28 28 H 1.09001 * 109.47180 * 185.00898 * 1 2 3 29 29 H 1.09000 * 109.47360 * 305.00802 * 1 2 3 30 30 H 1.09000 * 109.47106 * 65.01382 * 1 2 3 31 31 H 1.08996 * 109.46881 * 270.00330 * 3 2 1 32 32 H 1.09006 * 109.46701 * 29.99699 * 3 2 1 33 33 H 1.08998 * 109.46967 * 149.99675 * 3 2 1 34 34 H 0.97009 * 119.99279 * 0.02562 * 8 6 4 35 35 H 1.09001 * 110.48305 * 261.60063 * 11 9 8 36 36 H 1.09001 * 110.48584 * 24.10353 * 11 9 8 37 37 H 1.09004 * 113.40906 * 192.89976 * 15 14 12 38 38 H 1.08994 * 113.47273 * 105.56421 * 16 15 14 39 39 H 1.08998 * 113.46509 * 335.11672 * 16 15 14 40 40 H 0.97002 * 119.99836 * 180.02562 * 21 20 18 41 41 H 1.08996 * 113.46652 * 87.44501 * 26 17 16 42 42 H 1.08996 * 113.46448 * 217.87496 * 26 17 16 43 43 H 1.09002 * 110.24392 * 136.28642 * 27 14 12 44 44 H 1.09003 * 110.24627 * 258.18845 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1529 0.0005 5 9 3.5187 -1.1556 0.1147 6 6 1.4414 -2.4255 -0.1235 7 8 1.2719 -2.9251 -1.2191 8 7 0.9601 -3.0363 0.9773 9 6 0.2334 -4.3022 0.8541 10 1 -0.3029 -4.3518 -0.0936 11 6 1.1896 -5.5070 1.0126 12 6 0.3774 -6.5295 1.7762 13 8 0.6529 -7.7070 1.8690 14 7 -0.6961 -5.9438 2.3345 15 6 -1.7003 -6.6496 3.1342 16 6 -1.1384 -7.3366 4.3865 17 7 -2.0286 -8.4717 4.0998 18 6 -2.6439 -9.4516 4.8321 19 1 -2.5065 -9.4926 5.9025 20 6 -3.4394 -10.3960 4.1978 21 7 -3.6065 -10.3463 2.8932 22 14 -4.2725 -11.7374 5.1958 23 1 -3.9270 -11.5737 6.6307 24 1 -5.7445 -11.6386 5.0262 25 1 -3.8079 -13.0665 4.7236 26 6 -1.9620 -8.0948 2.6798 27 6 -0.7291 -4.5054 2.0452 28 1 -0.3633 -1.0237 0.0897 29 1 -0.3634 0.5896 0.8417 30 1 -0.3633 0.4341 -0.9315 31 1 2.4421 1.6197 -1.0276 32 1 1.6714 2.0647 0.5138 33 1 3.2129 1.1747 0.5139 34 1 1.0950 -2.6375 1.8513 35 1 1.4776 -5.8964 0.0361 36 1 2.0728 -5.2205 1.5835 37 1 -2.6019 -6.0634 3.3126 38 1 -1.3822 -6.8171 5.3131 39 1 -0.0799 -7.5845 4.3075 40 1 -4.1626 -11.0060 2.4500 41 1 -1.1207 -8.5426 2.1509 42 1 -2.9074 -8.2212 2.1524 43 1 -1.7386 -4.1989 1.7710 44 1 -0.3855 -3.9385 2.9105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108534431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:37 Heat of formation + Delta-G solvation = -25.149651 kcal Electronic energy + Delta-G solvation = -27528.153659 eV Core-core repulsion = 23398.063711 eV Total energy + Delta-G solvation = -4130.089948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.29276 -40.89181 -39.82527 -37.47495 -36.52467 -35.98424 -34.27169 -32.24554 -30.63317 -28.67987 -28.04114 -27.58805 -26.89239 -24.54220 -23.60661 -22.84135 -21.47650 -20.57733 -19.78797 -18.48593 -18.21312 -17.24368 -16.79240 -16.51714 -16.26734 -16.02096 -15.40470 -15.33457 -14.81096 -14.68802 -14.33454 -14.21626 -13.83990 -13.61491 -13.57048 -13.51369 -13.41651 -13.28983 -12.93497 -12.51949 -12.47211 -12.16117 -12.14291 -11.92100 -11.62359 -11.52776 -11.24943 -10.88639 -10.77981 -10.48775 -10.11427 -10.03131 -9.83173 -9.42338 -9.31396 -9.22611 -8.68255 -8.19212 -6.83182 -5.73959 -3.06569 0.97656 1.86826 2.40862 2.86403 3.21373 3.41157 3.46243 3.48841 3.79974 4.08279 4.18245 4.29045 4.38890 4.49728 4.72229 4.77913 4.81535 4.95599 5.06044 5.14282 5.21613 5.30198 5.32195 5.38028 5.39208 5.49364 5.51672 5.58816 5.68268 5.69848 5.80964 5.92142 5.93841 6.28012 6.44613 6.54605 6.81835 6.87548 7.26120 7.44238 7.53986 7.57154 7.63536 7.99157 8.49954 9.05851 9.72213 10.65707 11.43531 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.034239 B = 0.002260 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.587074 B =12386.743054 C =12605.332881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.121 4.121 4 C -0.003 4.003 5 F -0.125 7.125 6 C 0.557 3.443 7 O -0.508 6.508 8 N -0.706 5.706 9 C 0.131 3.869 10 H 0.118 0.882 11 C -0.168 4.168 12 C 0.516 3.484 13 O -0.505 6.505 14 N -0.603 5.603 15 C 0.092 3.908 16 C 0.111 3.889 17 N -0.604 5.604 18 C -0.216 4.216 19 H 0.083 0.917 20 C -0.008 4.008 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.141 3.859 27 C 0.100 3.900 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.408 0.592 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.183 27.041 -4.905 28.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.113 4.113 3 C -0.178 4.178 4 C -0.025 4.025 5 F -0.104 7.104 6 C 0.341 3.659 7 O -0.382 6.382 8 N -0.359 5.359 9 C 0.025 3.975 10 H 0.136 0.864 11 C -0.210 4.210 12 C 0.302 3.698 13 O -0.380 6.380 14 N -0.338 5.338 15 C -0.011 4.011 16 C -0.017 4.017 17 N -0.330 5.330 18 C -0.343 4.343 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.563 5.563 22 Si 0.745 3.255 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.014 3.986 27 C -0.025 4.025 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.244 0.756 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.963 25.658 -5.532 27.735 hybrid contribution 0.032 -0.509 0.914 1.046 sum 8.995 25.148 -4.618 27.105 Atomic orbital electron populations 1.20876 0.89564 1.03620 1.03683 1.22500 0.97347 0.93974 0.97515 1.20818 1.00177 0.93474 1.03321 1.19172 0.77984 0.93934 1.11405 1.91523 1.28380 1.96996 1.93488 1.18265 0.79316 0.83463 0.84875 1.90902 1.56866 1.64230 1.26169 1.46019 1.56712 1.23547 1.09613 1.21930 0.92563 0.82175 1.00792 0.86402 1.22836 0.99433 0.95391 1.03301 1.20568 0.81332 0.88385 0.79504 1.90779 1.70886 1.15610 1.60691 1.48373 1.25499 1.07468 1.52430 1.23893 0.89767 0.94120 0.93317 1.22758 0.95031 0.89109 0.94779 1.45296 1.52235 1.31553 1.03874 1.18947 1.21476 1.03681 0.90218 0.89971 1.24836 1.00701 0.99122 0.95870 1.69852 1.42208 1.37021 1.07255 0.86005 0.78916 0.81679 0.78911 1.20416 1.21665 1.21685 1.22730 1.01250 0.85931 0.88652 1.22193 1.00411 0.83488 0.96385 0.91316 0.89796 0.90001 0.90151 0.90544 0.90807 0.75638 0.87577 0.87725 0.87167 0.94356 0.94427 0.93646 0.92027 0.91308 0.89400 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 9.92 36.01 0.36 -0.20 16 2 C -0.11 -0.67 6.11 -101.13 -0.62 -1.29 16 3 C -0.12 -0.53 9.88 36.00 0.36 -0.18 16 4 C 0.00 -0.02 7.13 -37.68 -0.27 -0.29 16 5 F -0.13 -1.19 16.31 2.25 0.04 -1.15 16 6 C 0.56 5.34 5.59 -12.58 -0.07 5.27 16 7 O -0.51 -6.85 16.75 5.27 0.09 -6.77 16 8 N -0.71 -5.02 4.97 -53.35 -0.27 -5.28 16 9 C 0.13 1.18 3.53 -66.31 -0.23 0.94 16 10 H 0.12 1.17 7.54 -51.93 -0.39 0.78 16 11 C -0.17 -1.95 6.59 -26.75 -0.18 -2.13 16 12 C 0.52 8.55 7.49 -10.86 -0.08 8.46 16 13 O -0.51 -11.11 14.46 5.55 0.08 -11.03 16 14 N -0.60 -8.93 3.18 -164.47 -0.52 -9.45 16 15 C 0.09 1.72 5.03 -67.68 -0.34 1.38 16 16 C 0.11 2.39 8.24 -8.49 -0.07 2.32 16 17 N -0.60 -16.30 3.78 -184.61 -0.70 -16.99 16 18 C -0.22 -6.27 10.75 -15.06 -0.16 -6.43 16 19 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.18 11.50 55.49 0.64 -27.54 16 22 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 C 0.14 3.51 6.81 -8.37 -0.06 3.46 16 27 C 0.10 0.91 7.07 -3.12 -0.02 0.89 16 28 H 0.07 0.38 6.21 -51.93 -0.32 0.05 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.21 8.12 -51.93 -0.42 -0.21 16 33 H 0.07 0.35 7.48 -51.93 -0.39 -0.04 16 34 H 0.41 1.80 8.41 -40.82 -0.34 1.45 16 35 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.87 7.35 -51.93 -0.38 0.48 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 1.70 5.41 -51.93 -0.28 1.42 16 42 H 0.07 1.87 7.11 -51.93 -0.37 1.50 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.50 7.80 -51.93 -0.41 0.10 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -37.43 368.12 -7.83 -45.26 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.23 Total: -2.06 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -1.48 Total: 11.86 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.85 Total: -59.27 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.17 Total: -17.80 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.43 -7.83 -45.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108534431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.109 kcal (2) G-P(sol) polarization free energy of solvation -37.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds