Wall clock time and date at job start Tue Mar 31 2020 13:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50699 * 120.00220 * 2 1 4 4 C 1.33118 * 119.99766 * 179.97438 * 2 1 3 5 5 F 1.35104 * 119.99881 * 185.60031 * 4 2 1 6 6 C 1.47293 * 120.00308 * 5.60615 * 4 2 1 7 7 O 1.21606 * 120.00549 * 92.73275 * 6 4 2 8 8 N 1.34780 * 120.00079 * 272.73296 * 6 4 2 9 9 C 1.46490 * 120.00564 * 180.02562 * 8 6 4 10 10 H 1.09005 * 110.88285 * 328.80652 * 9 8 6 11 11 C 1.54624 * 110.97439 * 92.62069 * 9 8 6 12 12 C 1.51276 * 104.26164 * 142.70142 * 11 9 8 13 13 O 1.21285 * 124.95040 * 164.01161 * 12 11 9 14 14 N 1.34428 * 110.11446 * 344.14500 * 12 11 9 15 15 C 1.46495 * 124.34958 * 179.43549 * 14 12 11 16 16 C 1.53500 * 114.20519 * 59.70781 * 15 14 12 17 17 N 1.47073 * 87.98107 * 220.34187 * 16 15 14 18 18 C 1.36940 * 136.05401 * 207.08798 * 17 16 15 19 19 H 1.07997 * 119.99888 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99609 * 180.27361 * 18 17 16 21 21 N 1.31615 * 120.00010 * 359.72156 * 20 18 17 22 22 Si 1.86802 * 119.99702 * 179.72387 * 20 18 17 23 23 H 1.48500 * 109.46997 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47001 * 119.99783 * 22 20 18 25 25 H 1.48504 * 109.46558 * 239.99817 * 22 20 18 26 26 C 1.47068 * 87.88449 * 27.33884 * 17 16 15 27 27 C 1.46762 * 111.29346 * 359.17351 * 14 12 11 28 28 H 1.09001 * 109.47180 * 185.00898 * 1 2 3 29 29 H 1.09000 * 109.47360 * 305.00802 * 1 2 3 30 30 H 1.09000 * 109.47106 * 65.01382 * 1 2 3 31 31 H 1.08996 * 109.46881 * 270.00330 * 3 2 1 32 32 H 1.09006 * 109.46701 * 29.99699 * 3 2 1 33 33 H 1.08998 * 109.46967 * 149.99675 * 3 2 1 34 34 H 0.97009 * 119.99279 * 0.02562 * 8 6 4 35 35 H 1.09001 * 110.48305 * 261.60063 * 11 9 8 36 36 H 1.09001 * 110.48584 * 24.10353 * 11 9 8 37 37 H 1.09004 * 113.40906 * 192.89976 * 15 14 12 38 38 H 1.08994 * 113.47273 * 105.56421 * 16 15 14 39 39 H 1.08998 * 113.46509 * 335.11672 * 16 15 14 40 40 H 0.97002 * 119.99836 * 180.02562 * 21 20 18 41 41 H 1.08996 * 113.46652 * 87.44501 * 26 17 16 42 42 H 1.08996 * 113.46448 * 217.87496 * 26 17 16 43 43 H 1.09002 * 110.24392 * 136.28642 * 27 14 12 44 44 H 1.09003 * 110.24627 * 258.18845 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1529 0.0005 5 9 3.5187 -1.1556 0.1147 6 6 1.4414 -2.4255 -0.1235 7 8 1.2719 -2.9251 -1.2191 8 7 0.9601 -3.0363 0.9773 9 6 0.2334 -4.3022 0.8541 10 1 -0.3029 -4.3518 -0.0936 11 6 1.1896 -5.5070 1.0126 12 6 0.3774 -6.5295 1.7762 13 8 0.6529 -7.7070 1.8690 14 7 -0.6961 -5.9438 2.3345 15 6 -1.7003 -6.6496 3.1342 16 6 -1.1384 -7.3366 4.3865 17 7 -2.0286 -8.4717 4.0998 18 6 -2.6439 -9.4516 4.8321 19 1 -2.5065 -9.4926 5.9025 20 6 -3.4394 -10.3960 4.1978 21 7 -3.6065 -10.3463 2.8932 22 14 -4.2725 -11.7374 5.1958 23 1 -3.9270 -11.5737 6.6307 24 1 -5.7445 -11.6386 5.0262 25 1 -3.8079 -13.0665 4.7236 26 6 -1.9620 -8.0948 2.6798 27 6 -0.7291 -4.5054 2.0452 28 1 -0.3633 -1.0237 0.0897 29 1 -0.3634 0.5896 0.8417 30 1 -0.3633 0.4341 -0.9315 31 1 2.4421 1.6197 -1.0276 32 1 1.6714 2.0647 0.5138 33 1 3.2129 1.1747 0.5139 34 1 1.0950 -2.6375 1.8513 35 1 1.4776 -5.8964 0.0361 36 1 2.0728 -5.2205 1.5835 37 1 -2.6019 -6.0634 3.3126 38 1 -1.3822 -6.8171 5.3131 39 1 -0.0799 -7.5845 4.3075 40 1 -4.1626 -11.0060 2.4500 41 1 -1.1207 -8.5426 2.1509 42 1 -2.9074 -8.2212 2.1524 43 1 -1.7386 -4.1989 1.7710 44 1 -0.3855 -3.9385 2.9105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108534431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:36 Heat of formation + Delta-G solvation = -53.113630 kcal Electronic energy + Delta-G solvation = -27529.366268 eV Core-core repulsion = 23398.063711 eV Total energy + Delta-G solvation = -4131.302557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.89513 -42.00416 -40.82118 -39.12441 -37.73080 -36.49997 -35.35230 -34.21671 -31.86327 -29.46945 -29.11695 -28.53381 -27.87903 -26.41828 -25.35398 -23.62609 -22.29900 -22.21171 -20.45826 -19.90297 -18.90311 -18.74916 -18.10814 -17.62797 -17.06622 -16.98749 -16.89489 -16.31342 -16.15599 -15.77273 -15.51075 -15.46835 -14.95885 -14.68503 -14.58335 -14.49781 -14.11826 -14.06351 -13.81668 -13.64738 -13.49548 -13.27463 -13.21408 -12.94770 -12.87904 -12.85016 -12.69590 -12.51557 -12.32115 -11.99338 -11.94888 -11.39317 -11.25083 -11.12043 -10.72124 -10.25101 -9.82385 -9.58085 -8.96051 -7.94397 -5.29789 0.46912 1.13863 1.42795 1.45892 1.55095 1.56196 1.66510 2.03502 2.47248 3.14969 3.26307 3.36895 3.44390 3.53203 3.62745 3.73242 3.84261 3.90714 3.97660 4.24330 4.37439 4.49745 4.57677 4.62722 4.66322 4.71621 4.72269 4.74853 4.81769 4.85041 4.91764 4.96991 5.06251 5.17702 5.20681 5.23134 5.32894 5.45267 5.47500 5.83254 5.87137 6.21636 6.23156 6.85212 6.89913 7.18740 7.54795 8.55104 9.23594 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.034239 B = 0.002260 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.587074 B =12386.743054 C =12605.332881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.039 4.039 5 F -0.138 7.138 6 C 0.563 3.437 7 O -0.554 6.554 8 N -0.685 5.685 9 C 0.145 3.855 10 H 0.112 0.888 11 C -0.156 4.156 12 C 0.505 3.495 13 O -0.571 6.571 14 N -0.601 5.601 15 C 0.134 3.866 16 C 0.113 3.887 17 N -0.636 5.636 18 C -0.230 4.230 19 H 0.090 0.910 20 C -0.072 4.072 21 N -0.955 5.955 22 Si 0.987 3.013 23 H -0.260 1.260 24 H -0.285 1.285 25 H -0.296 1.296 26 C 0.133 3.867 27 C 0.101 3.899 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.425 0.575 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.067 0.933 39 H 0.021 0.979 40 H 0.249 0.751 41 H 0.028 0.972 42 H 0.036 0.964 43 H 0.114 0.886 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.658 30.640 -3.368 32.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.182 4.182 4 C -0.061 4.061 5 F -0.117 7.117 6 C 0.347 3.653 7 O -0.431 6.431 8 N -0.338 5.338 9 C 0.039 3.961 10 H 0.130 0.870 11 C -0.198 4.198 12 C 0.293 3.707 13 O -0.450 6.450 14 N -0.335 5.335 15 C 0.030 3.970 16 C -0.013 4.013 17 N -0.362 5.362 18 C -0.358 4.358 19 H 0.108 0.892 20 C -0.265 4.265 21 N -0.603 5.603 22 Si 0.815 3.185 23 H -0.184 1.184 24 H -0.212 1.212 25 H -0.224 1.224 26 C 0.007 3.993 27 C -0.021 4.021 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.264 0.736 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.132 0.868 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.459 29.365 -3.946 30.812 hybrid contribution 0.258 -1.518 0.406 1.592 sum 8.717 27.847 -3.540 29.393 Atomic orbital electron populations 1.21008 0.88278 1.03728 1.05087 1.22888 0.98249 0.93853 0.93532 1.20938 1.00265 0.93103 1.03891 1.19091 0.77654 0.93925 1.15389 1.91488 1.29162 1.97004 1.94022 1.18473 0.78713 0.83620 0.84450 1.90882 1.58663 1.65584 1.27970 1.45794 1.55594 1.22377 1.10073 1.21683 0.91748 0.81864 1.00804 0.86991 1.22761 0.99822 0.94947 1.02243 1.21415 0.81836 0.88209 0.79210 1.90748 1.72594 1.18723 1.62934 1.48335 1.23882 1.10018 1.51216 1.23225 0.91175 0.91701 0.90922 1.22815 0.93307 0.87818 0.97401 1.45723 1.53174 1.32503 1.04797 1.19410 1.21096 1.04340 0.90968 0.89226 1.25801 1.01915 1.01757 0.97005 1.70071 1.43295 1.37844 1.09102 0.84885 0.77617 0.77833 0.78205 1.18435 1.21162 1.22375 1.22586 0.98261 0.90711 0.87771 1.22551 1.02100 0.79709 0.97719 0.92088 0.87171 0.89391 0.89664 0.88225 0.91171 0.73560 0.88335 0.85868 0.83966 0.91501 0.96088 0.94245 0.95412 0.94541 0.86799 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.92 71.24 0.71 0.00 16 2 C -0.08 -0.78 6.11 -17.60 -0.11 -0.88 16 3 C -0.13 -0.73 9.88 71.24 0.70 -0.03 16 4 C -0.04 -0.57 7.13 23.50 0.17 -0.41 16 5 F -0.14 -2.50 16.31 44.97 0.73 -1.76 16 6 C 0.56 9.87 5.59 86.62 0.48 10.35 16 7 O -0.55 -14.66 16.75 -4.05 -0.07 -14.73 16 8 N -0.69 -7.73 4.97 -440.95 -2.19 -9.92 16 9 C 0.14 2.25 3.53 46.05 0.16 2.41 16 10 H 0.11 2.01 7.54 -2.38 -0.02 1.99 16 11 C -0.16 -3.48 6.59 30.58 0.20 -3.28 16 12 C 0.50 16.81 7.49 87.89 0.66 17.47 16 13 O -0.57 -26.53 14.46 -3.05 -0.04 -26.57 16 14 N -0.60 -16.79 3.18 -792.86 -2.52 -19.30 16 15 C 0.13 4.84 5.03 45.55 0.23 5.07 16 16 C 0.11 4.81 8.24 83.18 0.69 5.49 16 17 N -0.64 -34.95 3.78 -737.97 -2.79 -37.74 16 18 C -0.23 -13.55 10.75 84.03 0.90 -12.65 16 19 H 0.09 4.97 7.83 -2.91 -0.02 4.94 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.95 -60.95 11.50 21.65 0.25 -60.70 16 22 Si 0.99 47.30 29.55 68.60 2.03 49.33 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 C 0.13 6.93 6.81 83.27 0.57 7.49 16 27 C 0.10 1.43 7.07 86.83 0.61 2.04 16 28 H 0.06 0.47 6.21 -2.39 -0.01 0.46 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.15 8.12 -2.38 -0.02 0.13 16 33 H 0.07 0.50 7.48 -2.39 -0.02 0.48 16 34 H 0.42 2.01 8.41 -92.70 -0.78 1.23 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 36 H 0.12 2.30 8.08 -2.39 -0.02 2.28 16 37 H 0.14 4.32 8.14 -2.38 -0.02 4.30 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.02 0.98 7.35 -2.39 -0.02 0.96 16 40 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.03 1.65 5.41 -2.39 -0.01 1.64 16 42 H 0.04 2.09 7.11 -2.39 -0.02 2.07 16 43 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.11 0.85 7.80 -2.39 -0.02 0.84 16 Total: -1.00 -88.55 368.12 2.10 -86.45 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.26 Total: 5.70 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 6.44 Total: 29.25 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -7.25 Total: -127.66 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.11 Total: -41.30 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.73 Total: -1.76 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -88.55 2.10 -86.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108534431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.338 kcal (2) G-P(sol) polarization free energy of solvation -88.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds