Wall clock time and date at job start Tue Mar 31 2020 15:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99887 * 2 1 4 4 N 1.34780 * 120.00144 * 179.97438 * 2 1 3 5 5 C 1.39930 * 119.99940 * 175.72826 * 4 2 1 6 6 C 1.38872 * 120.06957 * 35.17105 * 5 4 2 7 7 C 1.38108 * 119.92790 * 180.02562 * 6 5 4 8 8 C 1.38289 * 120.07152 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.92801 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47264 * 20.00602 * 9 8 7 11 11 C 1.52992 * 109.47324 * 259.99932 * 9 8 7 12 12 N 1.46504 * 109.46971 * 140.00202 * 9 8 7 13 13 C 1.39076 * 120.00277 * 205.00219 * 12 9 8 14 14 C 1.38744 * 119.65831 * 359.97438 * 13 12 9 15 15 C 1.40774 * 118.67155 * 179.72599 * 14 13 12 16 16 C 1.41559 * 120.99613 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99306 * 325.54032 * 16 15 14 18 18 C 1.40020 * 120.00428 * 145.54605 * 16 15 14 19 19 N 1.30745 * 119.99775 * 4.49012 * 18 16 15 20 20 Si 1.86803 * 119.99924 * 184.49511 * 18 16 15 21 21 H 1.48496 * 109.47182 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47131 * 119.99654 * 20 18 16 23 23 H 1.48504 * 109.46928 * 239.99705 * 20 18 16 24 24 C 1.41182 * 118.01403 * 0.02562 * 15 14 13 25 25 C 1.36557 * 119.14716 * 0.02562 * 24 15 14 26 26 N 1.32095 * 121.26722 * 359.97438 * 25 24 15 27 27 C 1.38281 * 120.13889 * 0.25815 * 8 7 6 28 28 C 1.38117 * 120.07018 * 359.49194 * 27 8 7 29 29 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47355 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.47072 * 60.00937 * 1 2 3 32 32 H 0.96997 * 120.00173 * 355.73127 * 4 2 1 33 33 H 1.08001 * 120.03603 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.96429 * 180.02562 * 7 6 5 35 35 H 1.09007 * 109.47427 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47497 * 300.00528 * 11 9 8 37 37 H 1.09000 * 109.47173 * 60.00689 * 11 9 8 38 38 H 0.97001 * 120.00071 * 24.99976 * 12 9 8 39 39 H 1.08009 * 120.66516 * 359.71160 * 14 13 12 40 40 H 0.97003 * 119.99636 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.43056 * 179.97438 * 24 15 14 42 42 H 1.07996 * 119.36783 * 179.97438 * 25 24 15 43 43 H 1.08004 * 119.96553 * 179.74217 * 27 8 7 44 44 H 1.07998 * 120.03493 * 180.25791 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5773 -1.1689 -0.0897 6 6 4.3151 -0.1619 0.5187 7 6 5.6931 -0.1661 0.4273 8 6 6.3384 -1.1719 -0.2687 9 6 7.8421 -1.1731 -0.3669 10 1 8.2586 -0.5547 0.4283 11 6 8.2650 -0.6102 -1.7252 12 7 8.3393 -2.5444 -0.2303 13 6 9.6326 -2.7728 0.2273 14 6 10.4461 -1.6968 0.5520 15 6 11.7495 -1.9521 1.0186 16 6 12.6212 -0.8914 1.3635 17 1 12.5865 0.0368 0.8123 18 6 13.5282 -1.0454 2.4190 19 7 13.6319 -2.1972 3.0289 20 14 14.5901 0.3947 2.9557 21 1 14.2842 1.5771 2.1111 22 1 14.3075 0.7152 4.3779 23 1 16.0233 0.0363 2.8044 24 6 12.1618 -3.2977 1.1314 25 6 11.2907 -4.2913 0.7869 26 7 10.0740 -4.0162 0.3523 27 6 5.6063 -2.1734 -0.8797 28 6 4.2282 -2.1777 -0.7876 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 1.6980 -2.0061 0.0634 33 1 3.8118 0.6241 1.0620 34 1 6.2675 0.6165 0.9006 35 1 9.3527 -0.6114 -1.7964 36 1 7.8485 -1.2285 -2.5204 37 1 7.8951 0.4101 -1.8268 38 1 7.7665 -3.2930 -0.4591 39 1 10.0867 -0.6836 0.4485 40 1 14.2600 -2.3039 3.7604 41 1 13.1536 -3.5381 1.4848 42 1 11.6025 -5.3218 0.8714 43 1 6.1129 -2.9553 -1.4261 44 1 3.6572 -2.9624 -1.2615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163150373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:55 Heat of formation + Delta-G solvation = 21.725253 kcal Electronic energy + Delta-G solvation = -25927.051104 eV Core-core repulsion = 22229.763030 eV Total energy + Delta-G solvation = -3697.288075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74738 -39.19400 -38.27602 -36.15008 -34.60208 -33.80286 -31.44744 -31.02900 -30.59283 -30.11614 -27.97792 -27.47043 -25.79979 -23.78400 -22.92032 -21.90271 -21.01343 -20.88018 -19.87999 -18.06900 -17.69285 -17.14157 -16.39753 -15.90631 -15.37898 -15.23678 -14.81016 -14.55256 -14.39588 -14.04815 -13.80588 -13.59713 -13.49462 -13.33086 -13.16802 -12.87678 -12.77524 -12.59535 -12.41621 -12.18186 -12.03382 -11.61528 -11.35711 -11.26427 -11.14852 -10.85000 -10.69635 -10.44274 -10.17404 -10.08166 -9.78753 -9.38282 -8.99054 -8.94279 -8.16752 -7.91783 -7.81891 -6.68384 -6.40165 -4.53714 1.14567 1.38375 2.26240 2.76839 2.82875 3.07598 3.08638 3.13980 3.37139 3.69865 3.95409 4.10485 4.34253 4.67052 4.78648 4.82120 4.84420 4.93172 4.94606 5.26976 5.37026 5.43752 5.46169 5.62515 5.63463 5.82753 5.92588 5.96966 6.08208 6.14670 6.21893 6.24658 6.40031 6.50181 6.62803 6.80284 6.93461 6.94112 7.00376 7.06669 7.09213 7.36524 7.57384 7.77166 7.89580 8.10762 8.16599 8.51160 8.73399 8.89991 8.94163 9.76703 10.26232 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.002397 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.847789 B =11678.623961 C =12526.290257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.508 3.492 3 O -0.527 6.527 4 N -0.673 5.673 5 C 0.130 3.870 6 C -0.117 4.117 7 C -0.092 4.092 8 C -0.089 4.089 9 C 0.201 3.799 10 H 0.088 0.912 11 C -0.161 4.161 12 N -0.737 5.737 13 C 0.394 3.606 14 C -0.324 4.324 15 C 0.154 3.846 16 C -0.461 4.461 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.803 5.803 20 Si 0.915 3.085 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.233 4.233 25 C 0.111 3.889 26 N -0.617 5.617 27 C -0.093 4.093 28 C -0.141 4.141 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.410 0.590 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.388 0.612 39 H 0.100 0.900 40 H 0.278 0.722 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.307 1.556 -5.124 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.402 6.402 4 N -0.318 5.318 5 C 0.036 3.964 6 C -0.137 4.137 7 C -0.111 4.111 8 C -0.090 4.090 9 C 0.094 3.906 10 H 0.106 0.894 11 C -0.220 4.220 12 N -0.374 5.374 13 C 0.163 3.837 14 C -0.350 4.350 15 C 0.146 3.854 16 C -0.493 4.493 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.430 5.430 20 Si 0.740 3.260 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.258 4.258 25 C -0.039 4.039 26 N -0.340 5.340 27 C -0.112 4.112 28 C -0.161 4.161 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.246 0.754 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.223 0.777 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.334 1.701 -5.150 22.013 hybrid contribution 0.557 0.482 0.559 0.924 sum -20.778 2.184 -4.592 21.391 Atomic orbital electron populations 1.21852 0.90817 1.04500 1.05692 1.21009 0.90852 0.83244 0.75289 1.90749 1.70343 1.31288 1.47862 1.43642 1.05356 1.09785 1.73064 1.17732 0.82236 0.97675 0.98722 1.21196 0.93583 0.99156 0.99721 1.20971 0.93809 0.98211 0.98131 1.20111 0.95667 0.95342 0.97896 1.19544 0.87955 0.85015 0.98051 0.89377 1.22273 1.02701 1.00249 0.96786 1.44238 1.12634 1.05218 1.75300 1.17934 0.84609 0.89883 0.91225 1.21325 0.96073 0.96468 1.21169 1.17676 0.89802 0.92941 0.85010 1.19542 1.15508 1.00146 1.14145 0.90445 1.25910 0.95750 0.96801 0.95836 1.69758 1.30866 1.23752 1.18624 0.86153 0.79389 0.81454 0.79023 1.18510 1.19927 1.19907 1.22013 1.01840 0.93214 1.08702 1.21433 0.88826 0.97909 0.95736 1.66736 1.18751 1.20498 1.27994 1.20754 0.92878 0.98378 0.99149 1.20818 0.94853 0.99714 1.00721 0.90364 0.88391 0.88348 0.75427 0.84536 0.85339 0.91272 0.92766 0.92323 0.77710 0.88175 0.91114 0.85148 0.86385 0.85536 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.39 36.00 0.37 -0.33 16 2 C 0.51 4.56 7.78 -10.99 -0.09 4.47 16 3 O -0.53 -7.16 14.55 5.56 0.08 -7.07 16 4 N -0.67 -5.44 5.34 -9.86 -0.05 -5.49 16 5 C 0.13 1.47 6.30 -83.69 -0.53 0.94 16 6 C -0.12 -1.52 8.70 -39.39 -0.34 -1.87 16 7 C -0.09 -1.24 9.66 -39.61 -0.38 -1.62 16 8 C -0.09 -1.23 4.96 -104.59 -0.52 -1.75 16 9 C 0.20 3.18 2.46 -69.09 -0.17 3.01 16 10 H 0.09 1.51 6.31 -51.93 -0.33 1.19 16 11 C -0.16 -2.37 9.38 37.15 0.35 -2.02 16 12 N -0.74 -13.66 5.20 -55.12 -0.29 -13.95 16 13 C 0.39 9.16 7.63 -154.98 -1.18 7.97 16 14 C -0.32 -8.00 8.62 -38.44 -0.33 -8.33 16 15 C 0.15 4.16 5.57 -106.56 -0.59 3.56 16 16 C -0.46 -12.27 9.10 -37.65 -0.34 -12.61 16 17 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 18 C 0.07 1.86 5.44 -17.35 -0.09 1.77 16 19 N -0.80 -20.88 10.66 55.55 0.59 -20.29 16 20 Si 0.92 18.88 29.56 -169.99 -5.03 13.85 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 24 C -0.23 -6.16 8.72 -39.07 -0.34 -6.50 16 25 C 0.11 2.72 11.10 -18.05 -0.20 2.52 16 26 N -0.62 -15.06 10.37 -12.82 -0.13 -15.20 16 27 C -0.09 -1.14 9.04 -39.61 -0.36 -1.50 16 28 C -0.14 -1.50 9.97 -39.39 -0.39 -1.89 16 29 H 0.08 0.12 7.92 -51.93 -0.41 -0.29 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.41 1.82 8.66 -40.82 -0.35 1.47 16 33 H 0.14 1.86 6.24 -52.49 -0.33 1.53 16 34 H 0.13 1.59 8.03 -52.48 -0.42 1.16 16 35 H 0.07 1.15 7.65 -51.92 -0.40 0.75 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.39 6.67 7.00 -40.82 -0.29 6.39 16 39 H 0.10 2.31 6.07 -52.48 -0.32 1.99 16 40 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 41 H 0.13 3.53 6.23 -52.49 -0.33 3.20 16 42 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 43 H 0.13 1.45 6.93 -52.48 -0.36 1.09 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -32.45 367.68 -10.04 -42.49 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.62 Total: 14.27 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -5.14 Total: -14.16 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.12 Total: -54.92 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.08 Total: -7.07 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.45 -10.04 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163150373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.218 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds