Wall clock time and date at job start Tue Mar 31 2020 15:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99887 * 2 1 4 4 N 1.34780 * 120.00144 * 179.97438 * 2 1 3 5 5 C 1.39930 * 119.99940 * 175.72826 * 4 2 1 6 6 C 1.38872 * 120.06957 * 35.17105 * 5 4 2 7 7 C 1.38108 * 119.92790 * 180.02562 * 6 5 4 8 8 C 1.38289 * 120.07152 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.92801 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47264 * 20.00602 * 9 8 7 11 11 C 1.52992 * 109.47324 * 259.99932 * 9 8 7 12 12 N 1.46504 * 109.46971 * 140.00202 * 9 8 7 13 13 C 1.39076 * 120.00277 * 205.00219 * 12 9 8 14 14 C 1.38744 * 119.65831 * 359.97438 * 13 12 9 15 15 C 1.40774 * 118.67155 * 179.72599 * 14 13 12 16 16 C 1.41559 * 120.99613 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99306 * 325.54032 * 16 15 14 18 18 C 1.40020 * 120.00428 * 145.54605 * 16 15 14 19 19 N 1.30745 * 119.99775 * 4.49012 * 18 16 15 20 20 Si 1.86803 * 119.99924 * 184.49511 * 18 16 15 21 21 H 1.48496 * 109.47182 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47131 * 119.99654 * 20 18 16 23 23 H 1.48504 * 109.46928 * 239.99705 * 20 18 16 24 24 C 1.41182 * 118.01403 * 0.02562 * 15 14 13 25 25 C 1.36557 * 119.14716 * 0.02562 * 24 15 14 26 26 N 1.32095 * 121.26722 * 359.97438 * 25 24 15 27 27 C 1.38281 * 120.13889 * 0.25815 * 8 7 6 28 28 C 1.38117 * 120.07018 * 359.49194 * 27 8 7 29 29 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47355 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.47072 * 60.00937 * 1 2 3 32 32 H 0.96997 * 120.00173 * 355.73127 * 4 2 1 33 33 H 1.08001 * 120.03603 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.96429 * 180.02562 * 7 6 5 35 35 H 1.09007 * 109.47427 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47497 * 300.00528 * 11 9 8 37 37 H 1.09000 * 109.47173 * 60.00689 * 11 9 8 38 38 H 0.97001 * 120.00071 * 24.99976 * 12 9 8 39 39 H 1.08009 * 120.66516 * 359.71160 * 14 13 12 40 40 H 0.97003 * 119.99636 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.43056 * 179.97438 * 24 15 14 42 42 H 1.07996 * 119.36783 * 179.97438 * 25 24 15 43 43 H 1.08004 * 119.96553 * 179.74217 * 27 8 7 44 44 H 1.07998 * 120.03493 * 180.25791 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5773 -1.1689 -0.0897 6 6 4.3151 -0.1619 0.5187 7 6 5.6931 -0.1661 0.4273 8 6 6.3384 -1.1719 -0.2687 9 6 7.8421 -1.1731 -0.3669 10 1 8.2586 -0.5547 0.4283 11 6 8.2650 -0.6102 -1.7252 12 7 8.3393 -2.5444 -0.2303 13 6 9.6326 -2.7728 0.2273 14 6 10.4461 -1.6968 0.5520 15 6 11.7495 -1.9521 1.0186 16 6 12.6212 -0.8914 1.3635 17 1 12.5865 0.0368 0.8123 18 6 13.5282 -1.0454 2.4190 19 7 13.6319 -2.1972 3.0289 20 14 14.5901 0.3947 2.9557 21 1 14.2842 1.5771 2.1111 22 1 14.3075 0.7152 4.3779 23 1 16.0233 0.0363 2.8044 24 6 12.1618 -3.2977 1.1314 25 6 11.2907 -4.2913 0.7869 26 7 10.0740 -4.0162 0.3523 27 6 5.6063 -2.1734 -0.8797 28 6 4.2282 -2.1777 -0.7876 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 1.6980 -2.0061 0.0634 33 1 3.8118 0.6241 1.0620 34 1 6.2675 0.6165 0.9006 35 1 9.3527 -0.6114 -1.7964 36 1 7.8485 -1.2285 -2.5204 37 1 7.8951 0.4101 -1.8268 38 1 7.7665 -3.2930 -0.4591 39 1 10.0867 -0.6836 0.4485 40 1 14.2600 -2.3039 3.7604 41 1 13.1536 -3.5381 1.4848 42 1 11.6025 -5.3218 0.8714 43 1 6.1129 -2.9553 -1.4261 44 1 3.6572 -2.9624 -1.2615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163150373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:55 Heat of formation + Delta-G solvation = 2.242580 kcal Electronic energy + Delta-G solvation = -25927.895936 eV Core-core repulsion = 22229.763030 eV Total energy + Delta-G solvation = -3698.132907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58282 -40.56003 -39.70544 -37.43695 -35.95671 -35.36111 -32.76922 -32.38130 -31.97182 -31.04198 -29.20073 -28.87839 -27.76157 -24.85965 -24.01464 -23.51339 -22.67116 -21.91830 -21.10845 -19.47706 -18.88846 -18.01582 -17.87213 -17.15409 -16.75397 -16.48671 -16.32774 -15.83315 -15.64625 -15.38816 -15.02741 -14.96931 -14.82446 -14.39480 -14.25323 -14.20471 -14.08964 -13.61163 -13.56971 -13.29176 -13.10415 -13.01260 -12.89887 -12.81563 -12.64011 -12.31187 -11.97033 -11.87001 -11.69439 -11.35315 -11.24032 -10.90911 -10.68439 -9.91423 -9.86628 -9.80490 -9.08899 -8.57487 -8.19875 -6.55874 0.19054 0.41943 0.96814 1.21006 1.39156 1.53384 1.55629 1.58909 2.12119 2.21767 2.48128 2.81781 2.87161 3.66771 3.77656 3.79537 3.92926 4.02874 4.20879 4.30220 4.36425 4.45423 4.46431 4.59586 4.62217 4.66185 4.72615 4.89251 4.91379 5.02764 5.05135 5.08590 5.10419 5.18331 5.20680 5.31457 5.32737 5.38632 5.48032 5.61384 5.64693 5.96011 6.01764 6.18637 6.41461 6.44502 6.58853 6.90882 6.92439 7.06433 7.13421 7.86066 8.37765 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.002397 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.847789 B =11678.623961 C =12526.290257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.501 3.499 3 O -0.580 6.580 4 N -0.660 5.660 5 C 0.131 3.869 6 C -0.133 4.133 7 C -0.102 4.102 8 C -0.103 4.103 9 C 0.202 3.798 10 H 0.069 0.931 11 C -0.153 4.153 12 N -0.723 5.723 13 C 0.397 3.603 14 C -0.340 4.340 15 C 0.125 3.875 16 C -0.493 4.493 17 H 0.076 0.924 18 C 0.031 3.969 19 N -0.831 5.831 20 Si 0.990 3.010 21 H -0.258 1.258 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.259 4.259 25 C 0.113 3.887 26 N -0.624 5.624 27 C -0.096 4.096 28 C -0.131 4.131 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.430 0.570 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.106 0.894 40 H 0.286 0.714 41 H 0.117 0.883 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.586 1.069 -5.627 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.292 3.708 3 O -0.459 6.459 4 N -0.308 5.308 5 C 0.037 3.963 6 C -0.153 4.153 7 C -0.121 4.121 8 C -0.104 4.104 9 C 0.097 3.903 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.359 5.359 13 C 0.165 3.835 14 C -0.366 4.366 15 C 0.117 3.883 16 C -0.524 4.524 17 H 0.094 0.906 18 C -0.183 4.183 19 N -0.458 5.458 20 Si 0.811 3.189 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.284 4.284 25 C -0.037 4.037 26 N -0.348 5.348 27 C -0.115 4.115 28 C -0.151 4.151 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.270 0.730 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.234 0.766 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.135 0.865 42 H 0.163 0.837 43 H 0.155 0.845 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.690 1.178 -5.674 24.388 hybrid contribution 1.105 0.590 0.688 1.429 sum -22.585 1.768 -4.986 23.196 Atomic orbital electron populations 1.21892 0.86683 1.06984 1.06294 1.21966 0.92747 0.82426 0.73657 1.90734 1.71749 1.33180 1.50224 1.43649 1.04089 1.10851 1.72179 1.17901 0.83857 0.96939 0.97643 1.21202 0.93529 0.99885 1.00665 1.21004 0.94226 0.98434 0.98459 1.19882 0.94121 0.96680 0.99733 1.19581 0.89537 0.83182 0.98045 0.91282 1.22181 1.01129 1.01518 0.96383 1.44294 1.10921 1.06849 1.73857 1.18157 0.86009 0.89263 0.90115 1.21423 0.95883 0.97360 1.21949 1.18078 0.90952 0.93582 0.85683 1.19792 1.16970 1.00242 1.15431 0.90590 1.26828 0.96538 0.99694 0.95227 1.69826 1.31422 1.25587 1.18956 0.85033 0.77636 0.77658 0.78579 1.18187 1.19199 1.18733 1.21959 1.01897 0.93704 1.10800 1.21819 0.88615 0.98864 0.94432 1.66891 1.18609 1.20784 1.28495 1.20931 0.93778 0.97937 0.98813 1.21114 0.94314 0.99980 0.99733 0.86985 0.87699 0.87625 0.73012 0.85657 0.85489 0.93606 0.91554 0.90630 0.76625 0.87578 0.90281 0.86484 0.83684 0.84541 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 10.39 71.24 0.74 -0.10 16 2 C 0.50 8.10 7.78 87.66 0.68 8.79 16 3 O -0.58 -15.65 14.55 -3.04 -0.04 -15.69 16 4 N -0.66 -8.97 5.34 -303.50 -1.62 -10.59 16 5 C 0.13 2.72 6.30 38.15 0.24 2.96 16 6 C -0.13 -3.45 8.70 22.39 0.19 -3.26 16 7 C -0.10 -2.77 9.66 22.25 0.21 -2.56 16 8 C -0.10 -2.79 4.96 -19.84 -0.10 -2.88 16 9 C 0.20 6.42 2.46 44.24 0.11 6.53 16 10 H 0.07 2.46 6.31 -2.39 -0.02 2.45 16 11 C -0.15 -4.48 9.38 71.98 0.67 -3.80 16 12 N -0.72 -26.54 5.20 -328.29 -1.71 -28.25 16 13 C 0.40 18.61 7.63 132.90 1.01 19.62 16 14 C -0.34 -17.31 8.62 23.01 0.20 -17.11 16 15 C 0.13 7.01 5.57 -21.12 -0.12 6.89 16 16 C -0.49 -27.08 9.10 23.52 0.21 -26.86 16 17 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 18 C 0.03 1.60 5.44 85.29 0.46 2.06 16 19 N -0.83 -44.06 10.66 21.84 0.23 -43.83 16 20 Si 0.99 38.91 29.56 68.60 2.03 40.94 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 24 C -0.26 -14.11 8.72 22.60 0.20 -13.91 16 25 C 0.11 5.59 11.10 84.26 0.94 6.53 16 26 N -0.62 -30.43 10.37 -194.48 -2.02 -32.44 16 27 C -0.10 -2.16 9.04 22.25 0.20 -1.96 16 28 C -0.13 -2.41 9.97 22.39 0.22 -2.19 16 29 H 0.11 -0.17 7.92 -2.39 -0.02 -0.19 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.43 2.19 8.66 -92.71 -0.80 1.38 16 33 H 0.13 3.53 6.24 -2.91 -0.02 3.52 16 34 H 0.13 3.31 8.03 -2.91 -0.02 3.29 16 35 H 0.04 1.54 7.65 -2.38 -0.02 1.52 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.40 13.16 7.00 -92.71 -0.65 12.51 16 39 H 0.11 5.12 6.07 -2.91 -0.02 5.10 16 40 H 0.29 13.70 8.29 -92.71 -0.77 12.93 16 41 H 0.12 6.59 6.23 -2.91 -0.02 6.58 16 42 H 0.15 6.21 8.06 -2.91 -0.02 6.18 16 43 H 0.14 2.78 6.93 -2.91 -0.02 2.76 16 44 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -73.06 367.68 2.56 -70.49 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -0.40 Total: 40.62 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 6.09 Total: -21.25 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -5.11 Total: -115.11 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.04 Total: -15.69 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -73.06 2.56 -70.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163150373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.736 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds