Wall clock time and date at job start Tue Mar 31 2020 13:56:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52993 * 109.46950 * 2 1
4 4 H 1.09007 * 109.47146 * 54.99844 * 3 2 1
5 5 N 1.46501 * 109.47173 * 295.00145 * 3 2 1
6 6 C 1.34778 * 120.00076 * 84.99972 * 5 3 2
7 7 O 1.21575 * 120.00455 * 0.02562 * 6 5 3
8 8 N 1.34779 * 119.99678 * 179.97438 * 6 5 3
9 9 C 1.39464 * 119.99913 * 175.14470 * 8 6 5
10 10 C 1.38640 * 119.65192 * 185.22791 * 9 8 6
11 11 C 1.40818 * 118.67812 * 179.97438 * 10 9 8
12 12 C 1.41543 * 121.00032 * 179.97438 * 11 10 9
13 13 H 1.07998 * 119.99931 * 149.48795 * 12 11 10
14 14 C 1.40033 * 119.99525 * 329.48779 * 12 11 10
15 15 N 1.30746 * 119.99699 * 167.68369 * 14 12 11
16 16 Si 1.86793 * 120.00254 * 347.68489 * 14 12 11
17 17 H 1.48509 * 109.47327 * 92.44341 * 16 14 12
18 18 H 1.48501 * 109.47119 * 212.44151 * 16 14 12
19 19 H 1.48496 * 109.47240 * 332.44555 * 16 14 12
20 20 C 1.41164 * 118.00186 * 359.97438 * 11 10 9
21 21 C 1.36591 * 119.13116 * 0.02562 * 20 11 10
22 22 N 1.32077 * 121.25630 * 359.73562 * 21 20 11
23 23 C 1.50700 * 109.47436 * 174.99929 * 3 2 1
24 24 C 1.38232 * 119.99666 * 79.72130 * 23 3 2
25 25 C 1.38240 * 119.99751 * 179.79016 * 24 23 3
26 26 C 1.38230 * 119.99933 * 0.44411 * 25 24 23
27 27 C 1.38230 * 120.00061 * 359.81534 * 26 25 24
28 28 C 1.38229 * 119.99958 * 260.00317 * 23 3 2
29 29 H 1.09001 * 109.46906 * 60.00387 * 1 2 3
30 30 H 1.08994 * 109.47443 * 299.99895 * 1 2 3
31 31 H 1.09003 * 109.46857 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46906 * 119.99613 * 2 1 3
33 33 H 1.09000 * 109.46765 * 240.00188 * 2 1 3
34 34 H 0.97003 * 119.99893 * 264.99960 * 5 3 2
35 35 H 0.97003 * 120.00194 * 355.15510 * 8 6 5
36 36 H 1.07998 * 120.65849 * 0.02562 * 10 9 8
37 37 H 0.97001 * 119.99919 * 179.97438 * 15 14 12
38 38 H 1.08002 * 120.43563 * 179.97438 * 20 11 10
39 39 H 1.07999 * 119.37468 * 179.97438 * 21 20 11
40 40 H 1.07998 * 120.00154 * 0.02562 * 24 23 3
41 41 H 1.07999 * 119.99619 * 180.27821 * 25 24 23
42 42 H 1.08000 * 120.00192 * 179.83132 * 26 25 24
43 43 H 1.07999 * 120.00610 * 179.97438 * 27 26 25
44 44 H 1.08000 * 120.00356 * 359.97438 * 28 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6053 1.9815 0.8418
5 7 1.6524 2.0974 -1.2518
6 6 0.4350 2.6643 -1.3669
7 8 -0.3413 2.6326 -0.4318
8 7 0.0787 3.2673 -2.5184
9 6 -1.2150 3.7645 -2.6739
10 6 -1.6072 4.2852 -3.8975
11 6 -2.9183 4.7812 -4.0318
12 6 -3.3703 5.3241 -5.2583
13 1 -4.4121 5.2465 -5.5319
14 6 -2.4664 5.9618 -6.1170
15 7 -2.8201 6.2481 -7.3428
16 14 -0.7555 6.4035 -5.5113
17 1 0.1836 5.2985 -5.8314
18 1 -0.3002 7.6492 -6.1792
19 1 -0.7897 6.6139 -4.0417
20 6 -3.7684 4.7207 -2.9064
21 6 -3.2925 4.1895 -1.7415
22 7 -2.0578 3.7290 -1.6523
23 6 3.5419 1.4444 0.1238
24 6 4.3272 1.1975 -0.9866
25 6 5.7050 1.2036 -0.8739
26 6 6.2972 1.4474 0.3511
27 6 5.5118 1.6889 1.4626
28 6 4.1340 1.6872 1.3491
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 2.2719 2.1231 -1.9978
35 1 0.7220 3.3554 -3.2391
36 1 -0.9212 4.3092 -4.7312
37 1 -2.1941 6.6901 -7.9375
38 1 -4.7815 5.0903 -2.9655
39 1 -3.9393 4.1417 -0.8779
40 1 3.8645 1.0037 -1.9430
41 1 6.3186 1.0151 -1.7425
42 1 7.3735 1.4494 0.4397
43 1 5.9743 1.8791 2.4198
44 1 3.5204 1.8760 2.2175
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001219700900.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:56:15
Heat of formation + Delta-G solvation = 35.859943 kcal
Electronic energy + Delta-G solvation = -26715.305604 eV
Core-core repulsion = 23018.630456 eV
Total energy + Delta-G solvation = -3696.675149 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.153 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.46623 -39.45811 -38.30290 -35.91238 -34.26849 -33.80418 -32.14269 -31.28614
-31.20461 -31.05419 -28.76916 -26.18413 -25.88299 -23.05306 -22.39157 -22.36061
-22.05325 -20.46336 -20.04581 -18.49863 -17.73816 -17.18778 -16.27063 -15.91988
-15.47877 -15.43820 -15.20601 -14.67395 -14.59554 -14.19529 -13.81078 -13.73550
-13.67172 -13.55279 -13.14171 -13.03073 -12.92121 -12.64399 -12.28025 -12.04539
-11.59929 -11.43502 -11.33964 -10.99647 -10.96979 -10.83425 -10.78024 -10.65598
-10.03638 -9.87612 -9.65264 -9.37547 -9.20469 -9.08680 -8.80357 -8.20764
-7.86406 -7.24170 -7.04315 -4.73624 1.03680 1.11545 2.41326 2.63649
2.86654 3.00029 3.12677 3.24255 3.51028 3.71829 3.88217 4.36080
4.37809 4.59840 4.60812 4.71106 4.83719 5.06522 5.11601 5.21591
5.26924 5.41059 5.43821 5.61036 5.69183 5.71936 5.78902 5.88477
6.06844 6.15772 6.22201 6.23916 6.24620 6.29321 6.36684 6.40881
6.56995 6.63761 6.68572 6.70126 6.93891 7.05440 7.20402 7.30112
7.65401 7.94841 8.19781 8.22802 8.44690 8.65838 9.00895 9.48762
9.97297
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.016684 B = 0.003112 C = 0.002757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1677.855019 B = 8995.730124 C =10152.485625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.126 4.126
3 C 0.206 3.794
4 H 0.097 0.903
5 N -0.747 5.747
6 C 0.694 3.306
7 O -0.520 6.520
8 N -0.674 5.674
9 C 0.388 3.612
10 C -0.323 4.323
11 C 0.130 3.870
12 C -0.438 4.438
13 H 0.095 0.905
14 C 0.084 3.916
15 N -0.805 5.805
16 Si 0.919 3.081
17 H -0.272 1.272
18 H -0.292 1.292
19 H -0.245 1.245
20 C -0.271 4.271
21 C 0.129 3.871
22 N -0.551 5.551
23 C -0.086 4.086
24 C -0.114 4.114
25 C -0.117 4.117
26 C -0.123 4.123
27 C -0.117 4.117
28 C -0.108 4.108
29 H 0.064 0.936
30 H 0.061 0.939
31 H 0.042 0.958
32 H 0.067 0.933
33 H 0.061 0.939
34 H 0.390 0.610
35 H 0.403 0.597
36 H 0.107 0.893
37 H 0.287 0.713
38 H 0.109 0.891
39 H 0.129 0.871
40 H 0.121 0.879
41 H 0.122 0.878
42 H 0.121 0.879
43 H 0.123 0.877
44 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.202 -9.212 10.640 22.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.165 4.165
3 C 0.100 3.900
4 H 0.115 0.885
5 N -0.406 5.406
6 C 0.393 3.607
7 O -0.390 6.390
8 N -0.321 5.321
9 C 0.159 3.841
10 C -0.349 4.349
11 C 0.121 3.879
12 C -0.468 4.468
13 H 0.113 0.887
14 C -0.136 4.136
15 N -0.430 5.430
16 Si 0.746 3.254
17 H -0.198 1.198
18 H -0.220 1.220
19 H -0.168 1.168
20 C -0.295 4.295
21 C -0.022 4.022
22 N -0.270 5.270
23 C -0.087 4.087
24 C -0.132 4.132
25 C -0.135 4.135
26 C -0.141 4.141
27 C -0.136 4.136
28 C -0.126 4.126
29 H 0.083 0.917
30 H 0.080 0.920
31 H 0.061 0.939
32 H 0.086 0.914
33 H 0.079 0.921
34 H 0.224 0.776
35 H 0.237 0.763
36 H 0.125 0.875
37 H 0.098 0.902
38 H 0.128 0.872
39 H 0.146 0.854
40 H 0.139 0.861
41 H 0.140 0.860
42 H 0.139 0.861
43 H 0.141 0.859
44 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 16.746 -9.529 12.110 22.757
hybrid contribution 1.195 0.657 -1.677 2.162
sum 17.941 -8.872 10.433 22.571
Atomic orbital electron populations
1.21798 0.94015 1.00317 1.03972 1.21952 0.97512 0.95112 1.01894
1.19667 0.88998 0.93701 0.87589 0.88468 1.45343 1.16393 1.62101
1.16724 1.15982 0.82083 0.78961 0.83650 1.91030 1.50078 1.61071
1.36870 1.42665 1.12501 1.60088 1.16872 1.17744 0.83695 0.92429
0.90233 1.21196 1.00403 1.16859 0.96459 1.17695 0.89869 0.87667
0.92667 1.19504 0.97997 1.30539 0.98752 0.88668 1.26183 1.00744
0.93153 0.93482 1.69615 1.37924 1.30307 1.05109 0.86216 0.80664
0.77116 0.81413 1.19823 1.21962 1.16789 1.21685 1.01644 1.11898
0.94255 1.21631 0.91059 0.93322 0.96224 1.67328 1.04169 1.25828
1.29669 1.20022 0.94989 0.99625 0.94058 1.20962 0.93770 1.00186
0.98288 1.21142 0.94709 0.99949 0.97736 1.21172 0.99860 1.00070
0.93011 1.21150 0.93683 0.99946 0.98773 1.21045 0.94948 0.99519
0.97089 0.91746 0.91975 0.93940 0.91420 0.92053 0.77588 0.76322
0.87523 0.90240 0.87247 0.85397 0.86095 0.85984 0.86141 0.85938
0.85691
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.01 8.51 37.16 0.32 -1.70 16
2 C -0.13 -1.41 5.59 -26.73 -0.15 -1.56 16
3 C 0.21 2.41 2.46 -69.09 -0.17 2.24 16
4 H 0.10 1.31 7.44 -51.92 -0.39 0.93 16
5 N -0.75 -9.63 4.98 -59.81 -0.30 -9.93 16
6 C 0.69 12.26 7.09 -86.91 -0.62 11.65 16
7 O -0.52 -11.01 11.74 5.30 0.06 -10.94 16
8 N -0.67 -12.45 5.40 -15.86 -0.09 -12.53 16
9 C 0.39 8.84 7.42 -154.67 -1.15 7.70 16
10 C -0.32 -7.66 6.95 -38.46 -0.27 -7.93 16
11 C 0.13 3.25 5.17 -106.55 -0.55 2.70 16
12 C -0.44 -11.52 9.67 -37.65 -0.36 -11.89 16
13 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16
14 C 0.08 2.14 5.48 -17.34 -0.10 2.05 16
15 N -0.81 -20.79 13.92 55.55 0.77 -20.02 16
16 Si 0.92 20.19 24.43 -169.99 -4.15 16.03 16
17 H -0.27 -5.58 6.67 56.52 0.38 -5.21 16
18 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16
19 H -0.24 -5.65 6.65 56.52 0.38 -5.27 16
20 C -0.27 -6.32 9.85 -39.07 -0.38 -6.70 16
21 C 0.13 2.92 11.10 -18.04 -0.20 2.72 16
22 N -0.55 -13.22 7.85 -12.75 -0.10 -13.32 16
23 C -0.09 -0.86 4.95 -104.63 -0.52 -1.38 16
24 C -0.11 -1.02 9.05 -39.58 -0.36 -1.37 16
25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16
26 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16
27 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16
28 C -0.11 -0.99 9.67 -39.58 -0.38 -1.38 16
29 H 0.06 1.10 5.65 -51.93 -0.29 0.81 16
30 H 0.06 0.94 7.84 -51.93 -0.41 0.54 16
31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.39 4.01 6.90 -40.82 -0.28 3.73 16
35 H 0.40 6.05 8.71 -40.82 -0.36 5.69 16
36 H 0.11 2.43 4.44 -52.49 -0.23 2.19 16
37 H 0.29 6.69 8.29 -40.82 -0.34 6.35 16
38 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16
39 H 0.13 2.50 8.06 -52.49 -0.42 2.07 16
40 H 0.12 0.93 6.93 -52.49 -0.36 0.56 16
41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16
42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16
43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16
44 H 0.13 1.02 8.04 -52.49 -0.42 0.59 16
LS Contribution 358.86 15.07 5.41 5.41
Total: -1.00 -31.22 358.86 -10.21 -41.43
By element:
Atomic # 1 Polarization: 18.52 SS G_CDS: -5.73 Total: 12.78 kcal
Atomic # 6 Polarization: -2.83 SS G_CDS: -6.08 Total: -8.91 kcal
Atomic # 7 Polarization: -56.09 SS G_CDS: 0.29 Total: -55.80 kcal
Atomic # 8 Polarization: -11.01 SS G_CDS: 0.06 Total: -10.94 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -4.15 Total: 16.03 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -31.22 -10.21 -41.43 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001219700900.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.286 kcal
(2) G-P(sol) polarization free energy of solvation -31.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.065 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds