Wall clock time and date at job start Tue Mar 31 2020 13:56:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52993 * 109.46950 * 2 1
4 4 H 1.09007 * 109.47146 * 54.99844 * 3 2 1
5 5 N 1.46501 * 109.47173 * 295.00145 * 3 2 1
6 6 C 1.34778 * 120.00076 * 84.99972 * 5 3 2
7 7 O 1.21575 * 120.00455 * 0.02562 * 6 5 3
8 8 N 1.34779 * 119.99678 * 179.97438 * 6 5 3
9 9 C 1.39464 * 119.99913 * 175.14470 * 8 6 5
10 10 C 1.38640 * 119.65192 * 185.22791 * 9 8 6
11 11 C 1.40818 * 118.67812 * 179.97438 * 10 9 8
12 12 C 1.41543 * 121.00032 * 179.97438 * 11 10 9
13 13 H 1.07998 * 119.99931 * 149.48795 * 12 11 10
14 14 C 1.40033 * 119.99525 * 329.48779 * 12 11 10
15 15 N 1.30746 * 119.99699 * 167.68369 * 14 12 11
16 16 Si 1.86793 * 120.00254 * 347.68489 * 14 12 11
17 17 H 1.48509 * 109.47327 * 92.44341 * 16 14 12
18 18 H 1.48501 * 109.47119 * 212.44151 * 16 14 12
19 19 H 1.48496 * 109.47240 * 332.44555 * 16 14 12
20 20 C 1.41164 * 118.00186 * 359.97438 * 11 10 9
21 21 C 1.36591 * 119.13116 * 0.02562 * 20 11 10
22 22 N 1.32077 * 121.25630 * 359.73562 * 21 20 11
23 23 C 1.50700 * 109.47436 * 174.99929 * 3 2 1
24 24 C 1.38232 * 119.99666 * 79.72130 * 23 3 2
25 25 C 1.38240 * 119.99751 * 179.79016 * 24 23 3
26 26 C 1.38230 * 119.99933 * 0.44411 * 25 24 23
27 27 C 1.38230 * 120.00061 * 359.81534 * 26 25 24
28 28 C 1.38229 * 119.99958 * 260.00317 * 23 3 2
29 29 H 1.09001 * 109.46906 * 60.00387 * 1 2 3
30 30 H 1.08994 * 109.47443 * 299.99895 * 1 2 3
31 31 H 1.09003 * 109.46857 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46906 * 119.99613 * 2 1 3
33 33 H 1.09000 * 109.46765 * 240.00188 * 2 1 3
34 34 H 0.97003 * 119.99893 * 264.99960 * 5 3 2
35 35 H 0.97003 * 120.00194 * 355.15510 * 8 6 5
36 36 H 1.07998 * 120.65849 * 0.02562 * 10 9 8
37 37 H 0.97001 * 119.99919 * 179.97438 * 15 14 12
38 38 H 1.08002 * 120.43563 * 179.97438 * 20 11 10
39 39 H 1.07999 * 119.37468 * 179.97438 * 21 20 11
40 40 H 1.07998 * 120.00154 * 0.02562 * 24 23 3
41 41 H 1.07999 * 119.99619 * 180.27821 * 25 24 23
42 42 H 1.08000 * 120.00192 * 179.83132 * 26 25 24
43 43 H 1.07999 * 120.00610 * 179.97438 * 27 26 25
44 44 H 1.08000 * 120.00356 * 359.97438 * 28 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6053 1.9815 0.8418
5 7 1.6524 2.0974 -1.2518
6 6 0.4350 2.6643 -1.3669
7 8 -0.3413 2.6326 -0.4318
8 7 0.0787 3.2673 -2.5184
9 6 -1.2150 3.7645 -2.6739
10 6 -1.6072 4.2852 -3.8975
11 6 -2.9183 4.7812 -4.0318
12 6 -3.3703 5.3241 -5.2583
13 1 -4.4121 5.2465 -5.5319
14 6 -2.4664 5.9618 -6.1170
15 7 -2.8201 6.2481 -7.3428
16 14 -0.7555 6.4035 -5.5113
17 1 0.1836 5.2985 -5.8314
18 1 -0.3002 7.6492 -6.1792
19 1 -0.7897 6.6139 -4.0417
20 6 -3.7684 4.7207 -2.9064
21 6 -3.2925 4.1895 -1.7415
22 7 -2.0578 3.7290 -1.6523
23 6 3.5419 1.4444 0.1238
24 6 4.3272 1.1975 -0.9866
25 6 5.7050 1.2036 -0.8739
26 6 6.2972 1.4474 0.3511
27 6 5.5118 1.6889 1.4626
28 6 4.1340 1.6872 1.3491
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 2.2719 2.1231 -1.9978
35 1 0.7220 3.3554 -3.2391
36 1 -0.9212 4.3092 -4.7312
37 1 -2.1941 6.6901 -7.9375
38 1 -4.7815 5.0903 -2.9655
39 1 -3.9393 4.1417 -0.8779
40 1 3.8645 1.0037 -1.9430
41 1 6.3186 1.0151 -1.7425
42 1 7.3735 1.4494 0.4397
43 1 5.9743 1.8791 2.4198
44 1 3.5204 1.8760 2.2175
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001219700900.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:56:14
Heat of formation + Delta-G solvation = 17.439465 kcal
Electronic energy + Delta-G solvation = -26716.104376 eV
Core-core repulsion = 23018.630456 eV
Total energy + Delta-G solvation = -3697.473920 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.153 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.74954 -40.59066 -39.71274 -37.04612 -35.96579 -35.52875 -33.38779 -33.10284
-31.94535 -31.75621 -30.41519 -27.92333 -27.03479 -24.18199 -23.93250 -23.51741
-23.01040 -21.79765 -21.26833 -19.90588 -19.43823 -18.30176 -17.56849 -17.29656
-16.89740 -16.61413 -16.39670 -16.12299 -15.87978 -15.45984 -15.14476 -15.02080
-14.88476 -14.73025 -14.50787 -14.25218 -14.11895 -13.91983 -13.45605 -13.22670
-12.81438 -12.76271 -12.65054 -12.60483 -12.48482 -11.98143 -11.89020 -11.80105
-11.73030 -11.48427 -11.29112 -11.10892 -10.13644 -10.07268 -9.81820 -9.68457
-9.62853 -8.97615 -8.93683 -6.72661 0.37900 0.50199 0.62264 0.77623
1.22793 1.39504 1.47668 1.56790 2.09335 2.24758 2.71469 2.86502
3.12894 3.54526 3.55815 3.94844 4.00548 4.09252 4.19402 4.22382
4.29885 4.42896 4.46998 4.58435 4.60492 4.66692 4.67784 4.76588
4.77211 4.92313 5.00038 5.06917 5.13065 5.15119 5.16619 5.30478
5.44087 5.47521 5.55290 5.56907 5.63558 5.68057 5.73595 5.85475
6.10014 6.12100 6.29398 6.53176 6.69258 6.91551 7.55317 7.78366
8.11666
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.016684 B = 0.003112 C = 0.002757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1677.855019 B = 8995.730124 C =10152.485625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.118 4.118
3 C 0.209 3.791
4 H 0.076 0.924
5 N -0.726 5.726
6 C 0.692 3.308
7 O -0.557 6.557
8 N -0.667 5.667
9 C 0.387 3.613
10 C -0.329 4.329
11 C 0.115 3.885
12 C -0.468 4.468
13 H 0.066 0.934
14 C 0.051 3.949
15 N -0.838 5.838
16 Si 0.969 3.031
17 H -0.244 1.244
18 H -0.279 1.279
19 H -0.263 1.263
20 C -0.282 4.282
21 C 0.130 3.870
22 N -0.567 5.567
23 C -0.099 4.099
24 C -0.121 4.121
25 C -0.122 4.122
26 C -0.125 4.125
27 C -0.123 4.123
28 C -0.121 4.121
29 H 0.032 0.968
30 H 0.042 0.958
31 H 0.054 0.946
32 H 0.085 0.915
33 H 0.073 0.927
34 H 0.406 0.594
35 H 0.419 0.581
36 H 0.117 0.883
37 H 0.298 0.702
38 H 0.120 0.880
39 H 0.158 0.842
40 H 0.132 0.868
41 H 0.143 0.857
42 H 0.143 0.857
43 H 0.141 0.859
44 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.677 -10.117 11.353 25.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.156 4.156
3 C 0.105 3.895
4 H 0.094 0.906
5 N -0.385 5.385
6 C 0.392 3.608
7 O -0.430 6.430
8 N -0.317 5.317
9 C 0.157 3.843
10 C -0.354 4.354
11 C 0.106 3.894
12 C -0.499 4.499
13 H 0.084 0.916
14 C -0.166 4.166
15 N -0.464 5.464
16 Si 0.793 3.207
17 H -0.169 1.169
18 H -0.205 1.205
19 H -0.187 1.187
20 C -0.306 4.306
21 C -0.022 4.022
22 N -0.287 5.287
23 C -0.099 4.099
24 C -0.139 4.139
25 C -0.140 4.140
26 C -0.143 4.143
27 C -0.141 4.141
28 C -0.139 4.139
29 H 0.051 0.949
30 H 0.061 0.939
31 H 0.073 0.927
32 H 0.104 0.896
33 H 0.092 0.908
34 H 0.243 0.757
35 H 0.256 0.744
36 H 0.135 0.865
37 H 0.109 0.891
38 H 0.138 0.862
39 H 0.175 0.825
40 H 0.150 0.850
41 H 0.160 0.840
42 H 0.161 0.839
43 H 0.159 0.841
44 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 20.283 -10.463 12.789 26.161
hybrid contribution 0.125 0.862 -1.777 1.979
sum 20.407 -9.600 11.012 25.097
Atomic orbital electron populations
1.21695 0.96143 1.00247 1.01384 1.21897 0.95302 0.95095 1.03342
1.19656 0.90464 0.93419 0.86001 0.90617 1.45172 1.14846 1.60656
1.17810 1.16102 0.83015 0.78844 0.82828 1.91008 1.51597 1.62370
1.38019 1.42569 1.11400 1.59771 1.17917 1.17928 0.85017 0.91719
0.89661 1.21271 1.00067 1.16867 0.97219 1.17887 0.91100 0.87729
0.92655 1.19483 0.97125 1.32976 1.00319 0.91590 1.26846 1.03827
0.92569 0.93363 1.69632 1.39537 1.31261 1.05984 0.85446 0.77330
0.78260 0.79655 1.16862 1.20530 1.18717 1.21874 1.02160 1.12312
0.94248 1.22092 0.91086 0.92132 0.96867 1.67469 1.04816 1.26051
1.30319 1.19854 0.93545 1.01526 0.95003 1.21132 0.94325 1.00108
0.98324 1.21441 0.94551 0.99325 0.98691 1.21527 1.01128 0.98896
0.92737 1.21423 0.93246 0.99462 0.99955 1.21207 0.95786 0.99838
0.97068 0.94915 0.93868 0.92716 0.89615 0.90831 0.75732 0.74360
0.86525 0.89145 0.86202 0.82498 0.85018 0.83963 0.83946 0.84094
0.85427
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.79 8.51 71.98 0.61 -3.18 16
2 C -0.12 -2.45 5.59 30.59 0.17 -2.28 16
3 C 0.21 4.63 2.46 44.24 0.11 4.74 16
4 H 0.08 2.03 7.44 -2.38 -0.02 2.02 16
5 N -0.73 -17.56 4.98 -461.42 -2.30 -19.86 16
6 C 0.69 23.84 7.09 179.05 1.27 25.11 16
7 O -0.56 -23.56 11.74 -3.95 -0.05 -23.61 16
8 N -0.67 -23.72 5.40 -322.37 -1.74 -25.46 16
9 C 0.39 17.35 7.42 132.76 0.99 18.33 16
10 C -0.33 -15.37 6.95 23.00 0.16 -15.21 16
11 C 0.11 5.83 5.17 -21.11 -0.11 5.72 16
12 C -0.47 -25.46 9.67 23.52 0.23 -25.23 16
13 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16
14 C 0.05 2.60 5.48 85.29 0.47 3.07 16
15 N -0.84 -43.87 13.92 21.84 0.30 -43.57 16
16 Si 0.97 40.70 24.43 68.60 1.68 42.38 16
17 H -0.24 -9.08 6.67 99.48 0.66 -8.41 16
18 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16
19 H -0.26 -11.77 6.65 99.48 0.66 -11.11 16
20 C -0.28 -13.27 9.85 22.60 0.22 -13.05 16
21 C 0.13 5.80 11.10 84.27 0.94 6.74 16
22 N -0.57 -26.96 7.85 -194.26 -1.53 -28.49 16
23 C -0.10 -1.77 4.95 -19.87 -0.10 -1.87 16
24 C -0.12 -1.81 9.05 22.27 0.20 -1.61 16
25 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16
26 C -0.12 -1.53 10.05 22.27 0.22 -1.31 16
27 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16
28 C -0.12 -2.00 9.67 22.27 0.22 -1.79 16
29 H 0.03 1.10 5.65 -2.39 -0.01 1.09 16
30 H 0.04 1.33 7.84 -2.39 -0.02 1.31 16
31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.41 7.33 6.90 -92.71 -0.64 6.69 16
35 H 0.42 11.62 8.71 -92.71 -0.81 10.81 16
36 H 0.12 5.12 4.44 -2.91 -0.01 5.11 16
37 H 0.30 13.88 8.29 -92.71 -0.77 13.11 16
38 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16
39 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16
40 H 0.13 1.59 6.93 -2.91 -0.02 1.57 16
41 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16
42 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16
43 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16
44 H 0.13 1.94 8.04 -2.91 -0.02 1.92 16
Total: -1.00 -68.71 358.86 1.92 -66.79
By element:
Atomic # 1 Polarization: 36.89 SS G_CDS: -0.49 Total: 36.40 kcal
Atomic # 6 Polarization: -10.63 SS G_CDS: 6.04 Total: -4.59 kcal
Atomic # 7 Polarization: -112.11 SS G_CDS: -5.26 Total: -117.37 kcal
Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal
Atomic # 14 Polarization: 40.70 SS G_CDS: 1.68 Total: 42.38 kcal
Total: -68.71 1.92 -66.79 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001219700900.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.229 kcal
(2) G-P(sol) polarization free energy of solvation -68.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.790 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.439 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds