Wall clock time and date at job start Tue Mar 31 2020 14:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 H 1.08996 * 109.47422 * 179.27537 * 3 2 1 5 5 C 1.50705 * 109.47152 * 299.27130 * 3 2 1 6 6 H 1.08000 * 119.99964 * 120.00044 * 5 3 2 7 7 C 1.37878 * 119.99613 * 300.00047 * 5 3 2 8 8 N 1.31514 * 119.99737 * 180.27198 * 7 5 3 9 9 Si 1.86793 * 120.00327 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47409 * 89.99642 * 9 7 5 11 11 H 1.48499 * 109.47442 * 210.00009 * 9 7 5 12 12 H 1.48501 * 109.47152 * 329.99617 * 9 7 5 13 13 N 1.46900 * 109.47526 * 59.27117 * 3 2 1 14 14 C 1.46846 * 111.00071 * 54.95423 * 13 3 2 15 15 C 1.53032 * 109.52443 * 185.84217 * 14 13 3 16 16 C 1.53112 * 109.27897 * 300.81896 * 15 14 13 17 17 O 1.42902 * 109.57683 * 177.59277 * 16 15 14 18 18 C 1.36001 * 117.00307 * 83.30076 * 17 16 15 19 19 C 1.38631 * 120.03236 * 3.81369 * 18 17 16 20 20 C 1.38193 * 119.99036 * 179.72373 * 19 18 17 21 21 C 1.38456 * 120.06865 * 0.55737 * 20 19 18 22 22 F 1.35104 * 119.96006 * 179.74520 * 21 20 19 23 23 C 1.38437 * 120.07555 * 359.71889 * 21 20 19 24 24 C 1.38339 * 120.00326 * 0.02562 * 23 21 20 25 25 F 1.35097 * 120.02992 * 179.97438 * 24 23 21 26 26 C 1.53119 * 109.16210 * 57.65667 * 16 15 14 27 27 C 1.46850 * 111.00271 * 179.16610 * 13 3 2 28 28 H 1.09000 * 109.47313 * 65.05561 * 1 2 3 29 29 H 1.09001 * 109.47388 * 185.05238 * 1 2 3 30 30 H 1.08997 * 109.47804 * 305.05753 * 1 2 3 31 31 H 1.08998 * 109.47126 * 239.99390 * 2 1 3 32 32 H 1.09008 * 109.46799 * 119.99737 * 2 1 3 33 33 H 0.96999 * 120.00546 * 179.72369 * 8 7 5 34 34 H 1.09004 * 109.46046 * 305.85849 * 14 13 3 35 35 H 1.08996 * 109.46491 * 65.82290 * 14 13 3 36 36 H 1.09002 * 109.50270 * 180.87689 * 15 14 13 37 37 H 1.08997 * 109.50819 * 60.76274 * 15 14 13 38 38 H 1.09003 * 109.52666 * 297.74995 * 16 15 14 39 39 H 1.08000 * 120.00813 * 359.97438 * 19 18 17 40 40 H 1.08008 * 119.96597 * 180.25368 * 20 19 18 41 41 H 1.07996 * 119.99877 * 180.02562 * 23 21 20 42 42 H 1.09001 * 109.50412 * 182.40704 * 26 16 15 43 43 H 1.09003 * 109.53678 * 62.30325 * 26 16 15 44 44 H 1.08999 * 109.46038 * 294.17413 * 27 13 3 45 45 H 1.08998 * 109.45987 * 54.14291 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1298 1.4425 0.0130 5 6 1.5524 2.1476 -1.2394 6 1 0.9304 3.0261 -1.1515 7 6 1.9005 1.6712 -2.4856 8 7 1.4795 2.2897 -3.5672 9 14 2.9757 0.1514 -2.6376 10 1 2.1173 -1.0593 -2.6884 11 1 3.7829 0.2384 -3.8811 12 1 3.8820 0.0667 -1.4643 13 7 1.5360 2.1401 1.1905 14 6 1.8912 1.4134 2.4161 15 6 1.2290 2.0869 3.6202 16 6 1.7031 3.5400 3.7106 17 8 1.0459 4.1912 4.7996 18 6 1.5817 4.0170 6.0374 19 6 2.7596 3.3019 6.1893 20 6 3.3063 3.1303 7.4468 21 6 2.6728 3.6621 8.5571 22 9 3.2065 3.4886 9.7861 23 6 1.4934 4.3718 8.4094 24 6 0.9462 4.5500 7.1514 25 9 -0.2050 5.2420 7.0067 26 6 1.3643 4.2615 2.4033 27 6 2.0226 3.5249 1.2344 28 1 -0.3634 0.4334 -0.9318 29 1 -0.3634 -1.0237 0.0905 30 1 -0.3634 0.5902 0.8412 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7276 1.9570 -4.4439 34 1 1.5447 0.3827 2.3405 35 1 2.9736 1.4240 2.5438 36 1 1.5055 1.5565 4.5314 37 1 0.1460 2.0643 3.4998 38 1 2.7812 3.5622 3.8701 39 1 3.2521 2.8824 5.3245 40 1 4.2262 2.5766 7.5642 41 1 1.0005 4.7864 9.2763 42 1 1.7375 5.2848 2.4450 43 1 0.2834 4.2737 2.2632 44 1 3.1044 3.5257 1.3677 45 1 1.7714 4.0278 0.3005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:01 Heat of formation + Delta-G solvation = -90.247606 kcal Electronic energy + Delta-G solvation = -28095.383860 eV Core-core repulsion = 23942.551091 eV Total energy + Delta-G solvation = -4152.832769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.21752 -49.08061 -40.57059 -38.68112 -37.33531 -34.58411 -32.03448 -31.37454 -30.87957 -30.50392 -29.33304 -26.92513 -24.53266 -23.70211 -23.03265 -22.56358 -22.05985 -20.09573 -19.26879 -18.72439 -17.99654 -17.56990 -16.51921 -16.36088 -16.06404 -15.87201 -15.61877 -15.22436 -15.02977 -14.73132 -14.65369 -14.36071 -13.94850 -13.73427 -13.62338 -13.12628 -12.87896 -12.70556 -12.61619 -12.54117 -12.20785 -12.00182 -11.77751 -11.61065 -11.31162 -11.00040 -10.96744 -10.64777 -10.62755 -10.26700 -10.23396 -10.10381 -10.04340 -9.45615 -9.39033 -8.99102 -8.58937 -8.36763 -7.45931 -6.12224 -4.10194 0.58675 0.71849 2.82288 3.02044 3.21783 3.30588 3.33476 3.61040 4.02848 4.23058 4.34209 4.44551 4.52109 4.62388 4.79161 4.84410 4.99784 5.06926 5.19151 5.40386 5.42597 5.51571 5.59113 5.61401 5.67495 5.73239 5.77751 5.87420 5.95381 5.97480 6.08022 6.17246 6.25863 6.28320 6.30435 6.49720 6.56997 6.64201 6.84075 6.98824 7.05222 7.11708 7.37815 7.54858 7.83894 7.97433 8.58180 8.94382 9.49798 11.00393 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.002744 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.499616 B =10200.401366 C =10606.486653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.187 3.813 4 H -0.003 1.003 5 C -0.500 4.500 6 H 0.083 0.917 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.519 5.519 14 C 0.050 3.950 15 C -0.137 4.137 16 C 0.083 3.917 17 O -0.296 6.296 18 C 0.103 3.897 19 C -0.159 4.159 20 C -0.118 4.118 21 C 0.082 3.918 22 F -0.135 7.135 23 C -0.153 4.153 24 C 0.093 3.907 25 F -0.123 7.123 26 C -0.109 4.109 27 C 0.068 3.932 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.083 0.917 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.022 0.978 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 1.488 21.594 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.080 3.920 4 H 0.015 0.985 5 C -0.538 4.538 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.244 5.244 14 C -0.078 4.078 15 C -0.175 4.175 16 C 0.028 3.972 17 O -0.210 6.210 18 C 0.056 3.944 19 C -0.177 4.177 20 C -0.137 4.137 21 C 0.063 3.937 22 F -0.114 7.114 23 C -0.172 4.172 24 C 0.073 3.927 25 F -0.102 7.102 26 C -0.147 4.147 27 C -0.061 4.061 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.171 0.829 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.040 0.960 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.150 1.637 21.310 21.481 hybrid contribution 1.570 -1.019 0.037 1.872 sum 3.720 0.617 21.346 21.677 Atomic orbital electron populations 1.21486 0.95174 0.98208 1.03500 1.21932 0.97724 0.98032 0.98405 1.19710 0.92655 0.90702 0.88958 0.98525 1.20870 1.32037 1.13289 0.87617 0.89857 1.24880 0.95569 0.96660 0.95824 1.69868 1.45496 1.40374 0.97815 0.86963 0.80945 0.84087 0.76859 1.20412 1.22505 1.19549 1.61875 1.59908 1.01265 1.01337 1.22096 0.96623 0.98947 0.90164 1.22149 1.03169 0.93933 0.98289 1.22829 0.96217 0.93152 0.85026 1.86264 1.53257 1.69003 1.12433 1.19065 0.92953 0.96616 0.85808 1.21128 0.95723 1.02206 0.98670 1.21020 1.01148 1.00765 0.90815 1.17127 0.94128 1.02044 0.80437 1.91518 1.85579 1.93918 1.40367 1.20868 0.96800 1.02578 0.96993 1.16554 0.85503 0.99392 0.91232 1.91543 1.45721 1.76601 1.96312 1.21721 1.03551 0.98488 0.90916 1.21965 0.95497 0.90255 0.98337 0.91479 0.95928 0.92248 0.93554 0.94703 0.92597 0.89890 0.95983 0.91818 0.89761 0.91154 0.83083 0.83775 0.82932 0.91138 0.89803 0.95962 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.44 37.16 0.35 -2.14 16 2 C -0.12 -2.54 4.66 -26.74 -0.12 -2.66 16 3 C 0.19 4.09 1.35 -68.87 -0.09 3.99 16 4 H 0.00 -0.06 7.20 -51.93 -0.37 -0.44 16 5 C -0.50 -12.97 7.30 -34.44 -0.25 -13.22 16 6 H 0.08 2.36 7.01 -52.49 -0.37 2.00 16 7 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 8 N -0.90 -26.28 13.96 55.43 0.77 -25.51 16 9 Si 0.88 21.12 24.38 -169.99 -4.14 16.98 16 10 H -0.28 -6.53 6.86 56.52 0.39 -6.14 16 11 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.52 -9.58 3.64 -228.08 -0.83 -10.41 16 14 C 0.05 0.76 5.03 -3.84 -0.02 0.74 16 15 C -0.14 -1.77 5.46 -26.66 -0.15 -1.91 16 16 C 0.08 1.05 2.19 -26.61 -0.06 0.99 16 17 O -0.30 -3.94 9.68 -19.75 -0.19 -4.13 16 18 C 0.10 1.20 6.57 -39.20 -0.26 0.94 16 19 C -0.16 -1.51 8.38 -39.45 -0.33 -1.84 16 20 C -0.12 -1.00 10.02 -39.52 -0.40 -1.40 16 21 C 0.08 0.76 7.30 -39.43 -0.29 0.47 16 22 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 23 C -0.15 -1.43 10.00 -39.47 -0.39 -1.82 16 24 C 0.09 1.06 7.31 -39.31 -0.29 0.77 16 25 F -0.12 -1.56 17.11 2.25 0.04 -1.52 16 26 C -0.11 -1.54 5.75 -26.65 -0.15 -1.69 16 27 C 0.07 1.15 5.26 -3.83 -0.02 1.13 16 28 H 0.07 1.50 7.42 -51.93 -0.39 1.11 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 1.12 7.35 -51.93 -0.38 0.74 16 31 H 0.05 1.03 3.26 -51.93 -0.17 0.86 16 32 H 0.03 0.63 6.25 -51.92 -0.32 0.30 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 1.25 5.86 -51.93 -0.30 0.95 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.70 7.39 -51.93 -0.38 0.32 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.79 5.98 -51.93 -0.31 0.48 16 39 H 0.15 1.28 5.68 -52.49 -0.30 0.98 16 40 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 2.01 6.35 -51.93 -0.33 1.68 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -28.31 351.05 -7.78 -36.09 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.19 Total: 0.24 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.57 Total: -15.77 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.06 Total: -35.91 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.19 Total: -4.13 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.14 Total: 16.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.31 -7.78 -36.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.155 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds