Wall clock time and date at job start Tue Mar 31 2020 14:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 H 1.08996 * 109.47422 * 179.27537 * 3 2 1 5 5 C 1.50705 * 109.47152 * 299.27130 * 3 2 1 6 6 H 1.08000 * 119.99964 * 120.00044 * 5 3 2 7 7 C 1.37878 * 119.99613 * 300.00047 * 5 3 2 8 8 N 1.31514 * 119.99737 * 180.27198 * 7 5 3 9 9 Si 1.86793 * 120.00327 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47409 * 89.99642 * 9 7 5 11 11 H 1.48499 * 109.47442 * 210.00009 * 9 7 5 12 12 H 1.48501 * 109.47152 * 329.99617 * 9 7 5 13 13 N 1.46900 * 109.47526 * 59.27117 * 3 2 1 14 14 C 1.46846 * 111.00071 * 54.95423 * 13 3 2 15 15 C 1.53032 * 109.52443 * 185.84217 * 14 13 3 16 16 C 1.53112 * 109.27897 * 300.81896 * 15 14 13 17 17 O 1.42902 * 109.57683 * 177.59277 * 16 15 14 18 18 C 1.36001 * 117.00307 * 83.30076 * 17 16 15 19 19 C 1.38631 * 120.03236 * 3.81369 * 18 17 16 20 20 C 1.38193 * 119.99036 * 179.72373 * 19 18 17 21 21 C 1.38456 * 120.06865 * 0.55737 * 20 19 18 22 22 F 1.35104 * 119.96006 * 179.74520 * 21 20 19 23 23 C 1.38437 * 120.07555 * 359.71889 * 21 20 19 24 24 C 1.38339 * 120.00326 * 0.02562 * 23 21 20 25 25 F 1.35097 * 120.02992 * 179.97438 * 24 23 21 26 26 C 1.53119 * 109.16210 * 57.65667 * 16 15 14 27 27 C 1.46850 * 111.00271 * 179.16610 * 13 3 2 28 28 H 1.09000 * 109.47313 * 65.05561 * 1 2 3 29 29 H 1.09001 * 109.47388 * 185.05238 * 1 2 3 30 30 H 1.08997 * 109.47804 * 305.05753 * 1 2 3 31 31 H 1.08998 * 109.47126 * 239.99390 * 2 1 3 32 32 H 1.09008 * 109.46799 * 119.99737 * 2 1 3 33 33 H 0.96999 * 120.00546 * 179.72369 * 8 7 5 34 34 H 1.09004 * 109.46046 * 305.85849 * 14 13 3 35 35 H 1.08996 * 109.46491 * 65.82290 * 14 13 3 36 36 H 1.09002 * 109.50270 * 180.87689 * 15 14 13 37 37 H 1.08997 * 109.50819 * 60.76274 * 15 14 13 38 38 H 1.09003 * 109.52666 * 297.74995 * 16 15 14 39 39 H 1.08000 * 120.00813 * 359.97438 * 19 18 17 40 40 H 1.08008 * 119.96597 * 180.25368 * 20 19 18 41 41 H 1.07996 * 119.99877 * 180.02562 * 23 21 20 42 42 H 1.09001 * 109.50412 * 182.40704 * 26 16 15 43 43 H 1.09003 * 109.53678 * 62.30325 * 26 16 15 44 44 H 1.08999 * 109.46038 * 294.17413 * 27 13 3 45 45 H 1.08998 * 109.45987 * 54.14291 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1298 1.4425 0.0130 5 6 1.5524 2.1476 -1.2394 6 1 0.9304 3.0261 -1.1515 7 6 1.9005 1.6712 -2.4856 8 7 1.4795 2.2897 -3.5672 9 14 2.9757 0.1514 -2.6376 10 1 2.1173 -1.0593 -2.6884 11 1 3.7829 0.2384 -3.8811 12 1 3.8820 0.0667 -1.4643 13 7 1.5360 2.1401 1.1905 14 6 1.8912 1.4134 2.4161 15 6 1.2290 2.0869 3.6202 16 6 1.7031 3.5400 3.7106 17 8 1.0459 4.1912 4.7996 18 6 1.5817 4.0170 6.0374 19 6 2.7596 3.3019 6.1893 20 6 3.3063 3.1303 7.4468 21 6 2.6728 3.6621 8.5571 22 9 3.2065 3.4886 9.7861 23 6 1.4934 4.3718 8.4094 24 6 0.9462 4.5500 7.1514 25 9 -0.2050 5.2420 7.0067 26 6 1.3643 4.2615 2.4033 27 6 2.0226 3.5249 1.2344 28 1 -0.3634 0.4334 -0.9318 29 1 -0.3634 -1.0237 0.0905 30 1 -0.3634 0.5902 0.8412 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7276 1.9570 -4.4439 34 1 1.5447 0.3827 2.3405 35 1 2.9736 1.4240 2.5438 36 1 1.5055 1.5565 4.5314 37 1 0.1460 2.0643 3.4998 38 1 2.7812 3.5622 3.8701 39 1 3.2521 2.8824 5.3245 40 1 4.2262 2.5766 7.5642 41 1 1.0005 4.7864 9.2763 42 1 1.7375 5.2848 2.4450 43 1 0.2834 4.2737 2.2632 44 1 3.1044 3.5257 1.3677 45 1 1.7714 4.0278 0.3005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:00 Heat of formation + Delta-G solvation = -106.178048 kcal Electronic energy + Delta-G solvation = -28096.074656 eV Core-core repulsion = 23942.551091 eV Total energy + Delta-G solvation = -4153.523564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.96296 -49.93292 -41.50377 -39.88695 -38.33996 -36.06751 -33.96465 -32.37636 -31.89804 -31.73433 -30.23733 -28.66916 -25.77968 -25.01748 -24.00401 -23.77924 -23.18161 -21.47725 -20.64698 -19.59908 -18.85563 -18.45866 -18.36217 -17.44093 -17.20789 -16.78445 -16.45210 -16.34930 -16.09358 -15.85875 -15.64562 -15.46441 -15.24700 -15.17958 -15.02151 -14.62209 -14.06795 -13.97396 -13.79871 -13.54330 -13.43332 -13.24778 -12.89194 -12.80771 -12.56586 -12.52190 -12.42924 -12.16209 -12.00755 -11.86822 -11.63532 -11.48004 -11.40909 -11.19213 -10.73814 -10.62580 -10.17465 -9.18757 -8.92868 -8.23501 -6.24079 -0.12687 -0.04000 1.31698 1.35279 1.44508 1.92515 2.28538 2.34206 2.85520 3.09661 3.19320 3.29165 3.52828 3.62550 3.74166 3.86160 3.94588 4.05008 4.21186 4.24183 4.34465 4.41391 4.42083 4.51919 4.58219 4.66486 4.71496 4.77437 4.82450 4.83201 4.91202 4.97283 4.99165 5.04865 5.12422 5.17903 5.21274 5.27638 5.36054 5.40596 5.55641 5.67828 5.78069 6.08044 6.23350 6.42725 6.74968 6.82424 7.39658 8.92971 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.002744 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.499616 B =10200.401366 C =10606.486653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.124 4.124 3 C 0.191 3.809 4 H -0.010 1.010 5 C -0.488 4.488 6 H 0.042 0.958 7 C 0.015 3.985 8 N -0.950 5.950 9 Si 0.939 3.061 10 H -0.268 1.268 11 H -0.304 1.304 12 H -0.249 1.249 13 N -0.532 5.532 14 C 0.050 3.950 15 C -0.128 4.128 16 C 0.089 3.911 17 O -0.314 6.314 18 C 0.085 3.915 19 C -0.154 4.154 20 C -0.107 4.107 21 C 0.079 3.921 22 F -0.136 7.136 23 C -0.147 4.147 24 C 0.072 3.928 25 F -0.138 7.138 26 C -0.101 4.101 27 C 0.071 3.929 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.031 0.969 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -0.503 24.692 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.162 4.162 3 C 0.083 3.917 4 H 0.007 0.993 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.591 5.591 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.232 1.232 12 H -0.173 1.173 13 N -0.257 5.257 14 C -0.078 4.078 15 C -0.166 4.166 16 C 0.034 3.966 17 O -0.228 6.228 18 C 0.038 3.962 19 C -0.172 4.172 20 C -0.125 4.125 21 C 0.060 3.940 22 F -0.115 7.115 23 C -0.166 4.166 24 C 0.052 3.948 25 F -0.117 7.117 26 C -0.139 4.139 27 C -0.057 4.057 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.184 0.816 40 H 0.190 0.810 41 H 0.186 0.814 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.998 -0.358 24.455 24.782 hybrid contribution 0.959 -0.295 -0.803 1.285 sum 4.957 -0.653 23.653 24.175 Atomic orbital electron populations 1.21387 0.94869 0.99705 1.01641 1.21911 0.97996 0.96829 0.99461 1.19508 0.91971 0.91618 0.88615 0.99251 1.21088 1.30094 1.11839 0.89657 0.94000 1.25656 0.97235 0.99781 0.95519 1.70028 1.47988 1.42656 0.98405 0.86005 0.79523 0.80661 0.77102 1.19422 1.23216 1.17326 1.61768 1.60356 1.01806 1.01797 1.22186 0.97809 0.98865 0.88939 1.22063 1.02036 0.94168 0.98348 1.22680 0.97310 0.92521 0.84094 1.86222 1.53918 1.69494 1.13192 1.19281 0.94029 0.97845 0.85021 1.21274 0.94799 1.01530 0.99622 1.21311 1.01583 0.99721 0.89928 1.17253 0.94086 1.01998 0.80690 1.91523 1.85541 1.93906 1.40528 1.21013 0.96797 1.02031 0.96803 1.16806 0.85591 1.00332 0.92058 1.91500 1.46633 1.77127 1.96445 1.21555 1.02149 0.99075 0.91160 1.21830 0.96199 0.89746 0.97908 0.95256 0.93114 0.91772 0.94852 0.91037 0.92819 0.89371 0.94437 0.89059 0.91272 0.89008 0.81569 0.81039 0.81372 0.89937 0.91527 0.95046 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 9.44 71.98 0.68 -3.84 16 2 C -0.12 -4.83 4.66 30.59 0.14 -4.69 16 3 C 0.19 8.20 1.35 44.17 0.06 8.26 16 4 H -0.01 -0.44 7.20 -2.39 -0.02 -0.46 16 5 C -0.49 -26.22 7.30 25.60 0.19 -26.03 16 6 H 0.04 2.54 7.01 -2.91 -0.02 2.52 16 7 C 0.01 0.84 5.45 84.65 0.46 1.30 16 8 N -0.95 -58.14 13.96 21.45 0.30 -57.84 16 9 Si 0.94 43.59 24.38 68.60 1.67 45.26 16 10 H -0.27 -11.95 6.86 99.48 0.68 -11.27 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.25 -10.62 6.53 99.48 0.65 -9.97 16 13 N -0.53 -19.18 3.64 -875.53 -3.19 -22.37 16 14 C 0.05 1.34 5.03 86.32 0.43 1.78 16 15 C -0.13 -2.92 5.46 30.64 0.17 -2.75 16 16 C 0.09 2.05 2.19 30.67 0.07 2.12 16 17 O -0.31 -7.86 9.68 -93.57 -0.91 -8.77 16 18 C 0.08 1.79 6.57 22.52 0.15 1.93 16 19 C -0.15 -2.35 8.38 22.35 0.19 -2.17 16 20 C -0.11 -1.38 10.02 22.31 0.22 -1.16 16 21 C 0.08 1.22 7.30 22.37 0.16 1.39 16 22 F -0.14 -2.22 17.27 44.97 0.78 -1.44 16 23 C -0.15 -2.44 10.00 22.34 0.22 -2.21 16 24 C 0.07 1.53 7.31 22.45 0.16 1.69 16 25 F -0.14 -3.47 17.11 44.97 0.77 -2.70 16 26 C -0.10 -2.83 5.75 30.65 0.18 -2.66 16 27 C 0.07 2.45 5.26 86.33 0.45 2.90 16 28 H 0.03 1.31 7.42 -2.39 -0.02 1.29 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 2.35 7.35 -2.39 -0.02 2.33 16 31 H 0.03 1.39 3.26 -2.39 -0.01 1.38 16 32 H 0.07 2.27 6.25 -2.38 -0.01 2.26 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.09 2.30 5.86 -2.38 -0.01 2.28 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.62 7.39 -2.39 -0.02 1.60 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.09 1.73 5.98 -2.39 -0.01 1.72 16 39 H 0.17 2.01 5.68 -2.91 -0.02 2.00 16 40 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 2.68 6.35 -2.39 -0.02 2.66 16 Total: -1.00 -64.31 351.05 4.29 -60.02 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.93 Total: 11.96 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 3.94 Total: -24.13 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.89 Total: -80.21 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.91 Total: -8.77 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 1.55 Total: -4.14 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.67 Total: 45.26 kcal Total: -64.31 4.29 -60.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.160 kcal (2) G-P(sol) polarization free energy of solvation -64.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds