Wall clock time and date at job start Tue Mar 31 2020 14:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47326 * 2 1 4 4 O 1.21280 * 119.99914 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99829 * 179.97438 * 3 2 1 6 6 C 1.39924 * 119.99973 * 184.62466 * 5 3 2 7 7 C 1.38899 * 120.07183 * 324.90121 * 6 5 3 8 8 C 1.38088 * 119.93342 * 180.02562 * 7 6 5 9 9 C 1.38302 * 120.06783 * 359.97305 * 8 7 6 10 10 C 1.38258 * 120.14304 * 0.04734 * 9 8 7 11 11 C 1.50708 * 119.96861 * 180.02562 * 10 9 8 12 12 N 1.46493 * 109.46920 * 269.95730 * 11 10 9 13 13 C 1.38830 * 119.99801 * 179.97438 * 12 11 10 14 14 C 1.39796 * 119.58200 * 359.97438 * 13 12 11 15 15 C 1.38598 * 119.48813 * 179.97438 * 14 13 12 16 16 C 1.38385 * 118.68381 * 0.02562 * 15 14 13 17 17 C 1.40559 * 119.14594 * 359.97438 * 16 15 14 18 18 C 1.41322 * 119.78426 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.40027 * 120.00039 * 179.97438 * 18 17 16 21 21 N 1.30740 * 119.99991 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47022 * 90.00027 * 22 20 18 24 24 H 1.48492 * 109.47538 * 210.00228 * 22 20 18 25 25 H 1.48502 * 109.47240 * 330.00664 * 22 20 18 26 26 N 1.31954 * 119.58197 * 179.72753 * 13 12 11 27 27 C 1.38138 * 120.07145 * 359.95108 * 10 9 8 28 28 H 1.08996 * 109.46777 * 59.99825 * 1 2 3 29 29 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46923 * 300.00081 * 1 2 3 31 31 H 1.08997 * 109.47307 * 239.99707 * 2 1 3 32 32 H 1.09002 * 109.47134 * 119.99934 * 2 1 3 33 33 H 0.96996 * 120.00346 * 4.62745 * 5 3 2 34 34 H 1.08000 * 120.02940 * 359.97438 * 7 6 5 35 35 H 1.07995 * 119.96547 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.92966 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.46446 * 29.95333 * 11 10 9 38 38 H 1.08994 * 109.47518 * 149.95100 * 11 10 9 39 39 H 0.96992 * 120.00398 * 359.97438 * 12 11 10 40 40 H 1.07996 * 120.25749 * 359.97438 * 14 13 12 41 41 H 1.08000 * 120.65704 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.42964 * 179.97438 * 16 15 14 43 43 H 0.97000 * 120.00446 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.03668 * 180.29495 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8246 2.9823 0.0982 7 6 3.1202 4.0176 -0.5029 8 6 3.5841 5.3145 -0.4051 9 6 4.7486 5.5833 0.2909 10 6 5.4524 4.5550 0.8901 11 6 6.7205 4.8524 1.6481 12 7 7.8642 4.7746 0.7360 13 6 9.1473 5.0124 1.2097 14 6 9.3378 5.3261 2.5587 15 6 10.6197 5.5627 3.0297 16 6 11.6788 5.4809 2.1428 17 6 11.4227 5.1613 0.7982 18 6 12.4943 5.0737 -0.1189 19 1 13.5060 5.2524 0.2140 20 6 12.2443 4.7551 -1.4594 21 7 11.0195 4.5392 -1.8626 22 14 13.6607 4.6400 -2.6718 23 1 14.1793 3.2487 -2.6964 24 1 13.1838 5.0145 -4.0272 25 1 14.7451 5.5651 -2.2554 26 7 10.1721 4.9348 0.3821 27 6 4.9936 3.2554 0.7960 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9873 0.9324 -0.0669 34 1 2.2110 3.8082 -1.0469 35 1 3.0371 6.1198 -0.8726 36 1 5.1092 6.5985 0.3664 37 1 6.6628 5.8542 2.0738 38 1 6.8444 4.1238 2.4492 39 1 7.7251 4.5569 -0.1989 40 1 8.4927 5.3836 3.2286 41 1 10.7886 5.8060 4.0683 42 1 12.6892 5.6603 2.4794 43 1 10.8464 4.3182 -2.7910 44 1 5.5412 2.4533 1.2682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:32 Heat of formation + Delta-G solvation = 25.115325 kcal Electronic energy + Delta-G solvation = -25658.916797 eV Core-core repulsion = 21961.775727 eV Total energy + Delta-G solvation = -3697.141070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.75888 -38.96475 -38.10658 -35.57224 -34.60409 -33.35969 -33.13512 -31.38199 -30.29622 -29.80944 -28.56118 -25.46837 -25.24268 -25.11607 -22.40756 -21.95197 -21.38499 -20.46399 -20.00759 -17.86912 -17.37483 -17.16607 -16.30910 -16.12030 -15.99246 -15.12860 -14.90635 -14.74502 -14.57743 -14.17622 -13.96110 -13.64428 -13.29349 -13.20772 -13.13616 -12.78022 -12.59478 -12.41752 -12.15068 -11.92683 -11.89037 -11.58604 -11.56128 -11.22691 -11.12817 -10.97545 -10.61895 -10.50920 -10.40094 -9.99339 -9.91624 -9.48329 -8.87988 -8.83990 -8.22891 -7.89419 -7.49139 -6.49972 -6.31125 -4.45855 1.21667 1.33066 2.31489 2.78370 2.88788 3.11758 3.15060 3.25437 3.31276 3.69168 3.99392 4.29015 4.45679 4.63845 4.67252 4.82320 4.85001 4.89134 5.10004 5.17523 5.34898 5.38571 5.41013 5.49696 5.53145 5.80173 5.84805 5.85308 6.01902 6.09265 6.17007 6.23221 6.28790 6.48492 6.58980 6.67247 6.87426 6.90875 6.94619 6.99024 7.12135 7.26690 7.61219 7.82724 7.83183 7.93429 8.18630 8.37778 8.70506 8.81936 9.13793 10.26271 10.42022 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002414 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.291238 B =11594.814653 C =12426.535544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.510 3.490 4 O -0.523 6.523 5 N -0.674 5.674 6 C 0.134 3.866 7 C -0.118 4.118 8 C -0.106 4.106 9 C -0.111 4.111 10 C -0.076 4.076 11 C 0.182 3.818 12 N -0.734 5.734 13 C 0.411 3.589 14 C -0.368 4.368 15 C -0.032 4.032 16 C -0.317 4.317 17 C 0.292 3.708 18 C -0.434 4.434 19 H 0.083 0.917 20 C 0.071 3.929 21 N -0.716 5.716 22 Si 0.904 3.096 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.262 1.262 26 N -0.531 5.531 27 C -0.123 4.123 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.412 0.588 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.396 0.604 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.269 0.731 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.222 -7.712 1.092 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.398 6.398 5 N -0.319 5.319 6 C 0.041 3.959 7 C -0.138 4.138 8 C -0.125 4.125 9 C -0.130 4.130 10 C -0.077 4.077 11 C 0.057 3.943 12 N -0.371 5.371 13 C 0.171 3.829 14 C -0.394 4.394 15 C -0.056 4.056 16 C -0.340 4.340 17 C 0.165 3.835 18 C -0.466 4.466 19 H 0.101 0.899 20 C -0.154 4.154 21 N -0.337 5.337 22 Si 0.729 3.271 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.186 1.186 26 N -0.252 5.252 27 C -0.144 4.144 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.247 0.753 34 H 0.153 0.847 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.171 -7.335 0.240 19.597 hybrid contribution 1.081 -0.332 0.029 1.131 sum -17.090 -7.667 0.269 18.733 Atomic orbital electron populations 1.21541 0.92698 1.01818 1.03500 1.21651 0.98930 0.93018 1.04743 1.20998 0.81588 0.92333 0.75283 1.90704 1.55114 1.46308 1.47660 1.43563 1.07910 1.07375 1.73057 1.17691 0.95447 0.84253 0.98524 1.21235 1.00801 0.92101 0.99678 1.21042 0.96183 0.96274 0.98997 1.21144 0.94954 0.99344 0.97602 1.19784 0.96532 0.92622 0.98800 1.19929 0.81952 1.00882 0.91544 1.44125 1.02059 1.79805 1.11138 1.18517 0.85951 0.89650 0.88734 1.20608 0.96706 1.26705 0.95374 1.20594 0.92779 0.95289 0.96964 1.21532 0.97381 1.19269 0.95789 1.18207 0.89314 0.86531 0.89453 1.19576 0.93801 1.40710 0.92559 0.89917 1.26047 0.96202 0.93789 0.99353 1.70151 1.19900 1.27586 1.16085 0.86388 0.81857 0.79417 0.79468 1.19535 1.20271 1.18603 1.68211 0.97638 1.25574 1.33802 1.20832 0.96617 0.97074 0.99876 0.91874 0.91855 0.91867 0.88562 0.88522 0.75260 0.84653 0.85698 0.85631 0.92078 0.92296 0.76874 0.89195 0.88959 0.88736 0.91979 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.14 -0.83 6.42 -27.88 -0.18 -1.01 16 3 C 0.51 5.02 7.67 -10.99 -0.08 4.94 16 4 O -0.52 -7.07 13.42 5.56 0.07 -6.99 16 5 N -0.67 -6.36 5.34 -9.86 -0.05 -6.42 16 6 C 0.13 1.66 6.30 -83.69 -0.53 1.13 16 7 C -0.12 -1.53 8.70 -39.39 -0.34 -1.88 16 8 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 9 C -0.11 -1.46 9.70 -39.55 -0.38 -1.84 16 10 C -0.08 -1.06 5.25 -104.65 -0.55 -1.61 16 11 C 0.18 2.87 5.01 -5.19 -0.03 2.85 16 12 N -0.73 -14.70 5.71 -61.57 -0.35 -15.06 16 13 C 0.41 10.04 7.65 -155.32 -1.19 8.85 16 14 C -0.37 -8.48 9.34 -38.87 -0.36 -8.85 16 15 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 16 C -0.32 -8.06 9.83 -38.65 -0.38 -8.44 16 17 C 0.29 8.17 6.55 -84.99 -0.56 7.62 16 18 C -0.43 -11.82 9.14 -37.74 -0.34 -12.16 16 19 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 20 C 0.07 1.83 5.50 -17.35 -0.10 1.73 16 21 N -0.72 -19.09 11.46 55.55 0.64 -18.45 16 22 Si 0.90 18.79 29.56 -169.99 -5.02 13.76 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 N -0.53 -14.70 7.89 -10.32 -0.08 -14.78 16 27 C -0.12 -1.57 9.62 -39.39 -0.38 -1.95 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.48 8.10 -51.92 -0.42 0.06 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.41 2.66 8.82 -40.82 -0.36 2.30 16 34 H 0.14 1.81 6.23 -52.49 -0.33 1.48 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 38 H 0.06 0.91 7.86 -51.93 -0.41 0.50 16 39 H 0.40 8.12 8.58 -40.82 -0.35 7.77 16 40 H 0.09 1.83 6.68 -52.49 -0.35 1.48 16 41 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 42 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 44 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -32.57 373.83 -10.99 -43.56 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.97 Total: 12.76 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -5.85 Total: -14.02 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.15 Total: -54.71 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.07 Total: -6.99 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.57 -10.99 -43.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.680 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds