Wall clock time and date at job start Tue Mar 31 2020 14:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47326 * 2 1 4 4 O 1.21280 * 119.99914 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99829 * 179.97438 * 3 2 1 6 6 C 1.39924 * 119.99973 * 184.62466 * 5 3 2 7 7 C 1.38899 * 120.07183 * 324.90121 * 6 5 3 8 8 C 1.38088 * 119.93342 * 180.02562 * 7 6 5 9 9 C 1.38302 * 120.06783 * 359.97305 * 8 7 6 10 10 C 1.38258 * 120.14304 * 0.04734 * 9 8 7 11 11 C 1.50708 * 119.96861 * 180.02562 * 10 9 8 12 12 N 1.46493 * 109.46920 * 269.95730 * 11 10 9 13 13 C 1.38830 * 119.99801 * 179.97438 * 12 11 10 14 14 C 1.39796 * 119.58200 * 359.97438 * 13 12 11 15 15 C 1.38598 * 119.48813 * 179.97438 * 14 13 12 16 16 C 1.38385 * 118.68381 * 0.02562 * 15 14 13 17 17 C 1.40559 * 119.14594 * 359.97438 * 16 15 14 18 18 C 1.41322 * 119.78426 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.40027 * 120.00039 * 179.97438 * 18 17 16 21 21 N 1.30740 * 119.99991 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47022 * 90.00027 * 22 20 18 24 24 H 1.48492 * 109.47538 * 210.00228 * 22 20 18 25 25 H 1.48502 * 109.47240 * 330.00664 * 22 20 18 26 26 N 1.31954 * 119.58197 * 179.72753 * 13 12 11 27 27 C 1.38138 * 120.07145 * 359.95108 * 10 9 8 28 28 H 1.08996 * 109.46777 * 59.99825 * 1 2 3 29 29 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46923 * 300.00081 * 1 2 3 31 31 H 1.08997 * 109.47307 * 239.99707 * 2 1 3 32 32 H 1.09002 * 109.47134 * 119.99934 * 2 1 3 33 33 H 0.96996 * 120.00346 * 4.62745 * 5 3 2 34 34 H 1.08000 * 120.02940 * 359.97438 * 7 6 5 35 35 H 1.07995 * 119.96547 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.92966 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.46446 * 29.95333 * 11 10 9 38 38 H 1.08994 * 109.47518 * 149.95100 * 11 10 9 39 39 H 0.96992 * 120.00398 * 359.97438 * 12 11 10 40 40 H 1.07996 * 120.25749 * 359.97438 * 14 13 12 41 41 H 1.08000 * 120.65704 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.42964 * 179.97438 * 16 15 14 43 43 H 0.97000 * 120.00446 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.03668 * 180.29495 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8246 2.9823 0.0982 7 6 3.1202 4.0176 -0.5029 8 6 3.5841 5.3145 -0.4051 9 6 4.7486 5.5833 0.2909 10 6 5.4524 4.5550 0.8901 11 6 6.7205 4.8524 1.6481 12 7 7.8642 4.7746 0.7360 13 6 9.1473 5.0124 1.2097 14 6 9.3378 5.3261 2.5587 15 6 10.6197 5.5627 3.0297 16 6 11.6788 5.4809 2.1428 17 6 11.4227 5.1613 0.7982 18 6 12.4943 5.0737 -0.1189 19 1 13.5060 5.2524 0.2140 20 6 12.2443 4.7551 -1.4594 21 7 11.0195 4.5392 -1.8626 22 14 13.6607 4.6400 -2.6718 23 1 14.1793 3.2487 -2.6964 24 1 13.1838 5.0145 -4.0272 25 1 14.7451 5.5651 -2.2554 26 7 10.1721 4.9348 0.3821 27 6 4.9936 3.2554 0.7960 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9873 0.9324 -0.0669 34 1 2.2110 3.8082 -1.0469 35 1 3.0371 6.1198 -0.8726 36 1 5.1092 6.5985 0.3664 37 1 6.6628 5.8542 2.0738 38 1 6.8444 4.1238 2.4492 39 1 7.7251 4.5569 -0.1989 40 1 8.4927 5.3836 3.2286 41 1 10.7886 5.8060 4.0683 42 1 12.6892 5.6603 2.4794 43 1 10.8464 4.3182 -2.7910 44 1 5.5412 2.4533 1.2682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321329192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:29 Heat of formation + Delta-G solvation = 6.177224 kcal Electronic energy + Delta-G solvation = -25659.738015 eV Core-core repulsion = 21961.775727 eV Total energy + Delta-G solvation = -3697.962288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.62669 -40.23840 -39.65015 -36.91057 -35.78759 -35.06500 -33.79952 -32.75339 -32.10255 -30.85878 -30.16642 -27.28228 -26.66006 -25.78983 -23.52963 -23.27734 -22.76501 -22.08876 -20.98801 -19.26614 -18.70792 -18.28377 -17.61634 -17.22658 -16.83962 -16.57449 -16.44724 -16.07869 -15.95750 -15.41895 -15.03978 -14.89633 -14.75307 -14.60566 -14.34047 -14.00551 -13.66446 -13.54983 -13.40693 -13.19400 -12.83838 -12.75270 -12.71092 -12.61332 -12.53264 -12.21871 -12.20333 -12.04530 -11.73505 -11.37623 -11.28589 -10.86214 -10.65533 -9.88309 -9.81527 -9.42463 -9.17839 -8.28161 -8.21102 -6.45996 0.21635 0.30713 1.07833 1.36841 1.42201 1.54072 1.55200 1.59641 2.04207 2.25990 2.55334 2.94262 3.03670 3.65967 3.67878 3.90380 4.06604 4.14783 4.19499 4.24879 4.33618 4.37437 4.40603 4.50142 4.62893 4.70627 4.78240 4.81949 4.95559 4.98832 5.01749 5.02862 5.04221 5.13630 5.26422 5.30558 5.36996 5.38313 5.49746 5.61703 5.73602 5.98432 6.00407 6.08806 6.24609 6.39028 6.56649 6.85158 6.95132 7.09479 7.23546 8.36291 8.52870 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002414 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.291238 B =11594.814653 C =12426.535544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.504 3.496 4 O -0.565 6.565 5 N -0.666 5.666 6 C 0.132 3.868 7 C -0.129 4.129 8 C -0.107 4.107 9 C -0.119 4.119 10 C -0.085 4.085 11 C 0.185 3.815 12 N -0.727 5.727 13 C 0.395 3.605 14 C -0.366 4.366 15 C -0.030 4.030 16 C -0.344 4.344 17 C 0.258 3.742 18 C -0.471 4.471 19 H 0.086 0.914 20 C 0.026 3.974 21 N -0.751 5.751 22 Si 0.985 3.015 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.257 1.257 26 N -0.564 5.564 27 C -0.126 4.126 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.427 0.573 34 H 0.130 0.870 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.392 0.608 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.275 0.725 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.633 -8.868 1.254 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.295 3.705 4 O -0.443 6.443 5 N -0.312 5.312 6 C 0.038 3.962 7 C -0.150 4.150 8 C -0.125 4.125 9 C -0.138 4.138 10 C -0.086 4.086 11 C 0.061 3.939 12 N -0.363 5.363 13 C 0.154 3.846 14 C -0.392 4.392 15 C -0.054 4.054 16 C -0.367 4.367 17 C 0.131 3.869 18 C -0.503 4.503 19 H 0.104 0.896 20 C -0.196 4.196 21 N -0.373 5.373 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.181 1.181 26 N -0.287 5.287 27 C -0.146 4.146 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.265 0.735 34 H 0.148 0.852 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.226 0.774 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.609 -8.520 0.431 20.471 hybrid contribution 1.035 0.019 0.062 1.037 sum -17.574 -8.501 0.493 19.528 Atomic orbital electron populations 1.21557 0.93277 1.02851 1.01964 1.21727 0.98273 0.90328 1.07101 1.21823 0.81126 0.93666 0.73913 1.90687 1.56067 1.47948 1.49566 1.43587 1.08382 1.06777 1.72479 1.17798 0.95102 0.85503 0.97842 1.21350 1.00808 0.92760 1.00039 1.21258 0.95962 0.96712 0.98563 1.21257 0.95262 0.99554 0.97775 1.19663 0.95988 0.93417 0.99557 1.20049 0.81233 1.01383 0.91211 1.44286 1.01742 1.78712 1.11523 1.18954 0.86793 0.89405 0.89409 1.20962 0.97735 1.25266 0.95255 1.21010 0.92209 0.93748 0.98428 1.21690 0.98599 1.20816 0.95584 1.18687 0.89995 0.87349 0.90884 1.19925 0.94025 1.42453 0.93908 0.89608 1.26945 0.99118 0.92798 1.00730 1.70248 1.22062 1.28189 1.16838 0.85180 0.78023 0.79602 0.76681 1.18774 1.19399 1.18088 1.68180 0.98302 1.26935 1.35282 1.20930 0.96829 0.96993 0.99898 0.93363 0.89452 0.93532 0.85957 0.86079 0.73459 0.85233 0.83801 0.85076 0.91579 0.91498 0.77427 0.86254 0.85296 0.88021 0.91423 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 71.98 0.66 -0.91 16 2 C -0.13 -1.23 6.42 29.85 0.19 -1.04 16 3 C 0.50 9.30 7.67 87.66 0.67 9.98 16 4 O -0.56 -15.22 13.42 -3.03 -0.04 -15.26 16 5 N -0.67 -11.58 5.34 -303.51 -1.62 -13.20 16 6 C 0.13 3.13 6.30 38.15 0.24 3.37 16 7 C -0.13 -3.31 8.70 22.39 0.19 -3.11 16 8 C -0.11 -2.56 10.04 22.25 0.22 -2.33 16 9 C -0.12 -3.04 9.70 22.29 0.22 -2.83 16 10 C -0.09 -2.28 5.25 -19.88 -0.10 -2.38 16 11 C 0.19 5.61 5.01 85.64 0.43 6.03 16 12 N -0.73 -28.95 5.71 -348.72 -1.99 -30.94 16 13 C 0.39 19.30 7.65 133.42 1.02 20.32 16 14 C -0.37 -16.41 9.34 22.73 0.21 -16.19 16 15 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 16 C -0.34 -17.67 9.83 22.87 0.22 -17.45 16 17 C 0.26 14.83 6.55 40.18 0.26 15.10 16 18 C -0.47 -26.35 9.14 23.46 0.21 -26.13 16 19 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 20 C 0.03 1.34 5.50 85.29 0.47 1.81 16 21 N -0.75 -40.95 11.46 21.84 0.25 -40.70 16 22 Si 0.98 38.86 29.56 68.60 2.03 40.89 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 N -0.56 -31.97 7.89 -186.57 -1.47 -33.44 16 27 C -0.13 -3.06 9.62 22.39 0.22 -2.85 16 28 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.68 8.10 -2.38 -0.02 0.66 16 31 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.43 4.60 8.82 -92.71 -0.82 3.78 16 34 H 0.13 3.48 6.23 -2.91 -0.02 3.46 16 35 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.07 1.95 7.86 -2.39 -0.02 1.93 16 38 H 0.07 1.94 7.86 -2.39 -0.02 1.92 16 39 H 0.39 16.22 8.58 -92.71 -0.80 15.42 16 40 H 0.12 4.55 6.68 -2.91 -0.02 4.53 16 41 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 42 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 43 H 0.28 13.58 8.29 -92.71 -0.77 12.81 16 44 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.67 373.83 2.15 -70.52 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -0.57 Total: 41.86 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 5.57 Total: -19.74 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -4.83 Total: -118.27 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.04 Total: -15.26 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -72.67 2.15 -70.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.692 kcal (2) G-P(sol) polarization free energy of solvation -72.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds