Wall clock time and date at job start Tue Mar 31 2020 14:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 110.20082 * 2 1 4 4 C 1.54386 * 110.23500 * 238.09829 * 2 1 3 5 5 C 1.54540 * 101.76962 * 266.60656 * 4 2 1 6 6 H 1.09003 * 110.47390 * 93.64200 * 5 4 2 7 7 N 1.46503 * 110.47821 * 216.12851 * 5 4 2 8 8 C 1.34768 * 119.99989 * 205.00094 * 7 5 4 9 9 O 1.21284 * 120.00562 * 0.02562 * 8 7 5 10 10 C 1.50710 * 119.99795 * 180.02562 * 8 7 5 11 11 C 1.50696 * 109.47110 * 180.02562 * 10 8 7 12 12 C 1.37636 * 120.13136 * 264.72184 * 11 10 8 13 13 C 1.38606 * 120.25372 * 180.27504 * 12 11 10 14 14 C 1.38656 * 120.50195 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.24797 * 0.02562 * 14 13 12 16 16 C 1.40701 * 120.12722 * 84.99710 * 11 10 8 17 17 C 1.41395 * 120.24561 * 359.70586 * 16 11 10 18 18 H 1.08001 * 119.99768 * 329.79352 * 17 16 11 19 19 C 1.39946 * 120.00239 * 149.79475 * 17 16 11 20 20 N 1.30826 * 119.99850 * 162.08228 * 19 17 16 21 21 Si 1.86793 * 119.99798 * 342.08160 * 19 17 16 22 22 H 1.48499 * 109.47072 * 95.39269 * 21 19 17 23 23 H 1.48503 * 109.46947 * 215.39070 * 21 19 17 24 24 H 1.48503 * 109.47306 * 335.39097 * 21 19 17 25 25 C 1.51562 * 104.24125 * 334.82212 * 5 4 2 26 26 N 1.30905 * 141.44354 * 196.55194 * 25 5 4 27 27 C 1.34010 * 109.30294 * 179.84096 * 26 25 5 28 28 C 1.34564 * 108.02817 * 0.08776 * 27 26 25 29 29 N 1.34811 * 109.94409 * 16.58651 * 25 5 4 30 30 H 1.09006 * 109.46892 * 181.89757 * 1 2 3 31 31 H 1.08991 * 109.47217 * 301.89976 * 1 2 3 32 32 H 1.09007 * 109.46793 * 61.90503 * 1 2 3 33 33 H 1.09000 * 110.96584 * 148.49178 * 4 2 1 34 34 H 1.09002 * 110.96963 * 24.72530 * 4 2 1 35 35 H 0.97000 * 119.99700 * 25.00504 * 7 5 4 36 36 H 1.08995 * 109.47198 * 59.99707 * 10 8 7 37 37 H 1.09001 * 109.46516 * 300.00128 * 10 8 7 38 38 H 1.08009 * 119.87025 * 0.25704 * 12 11 10 39 39 H 1.07996 * 119.75413 * 179.97438 * 13 12 11 40 40 H 1.07997 * 119.87798 * 180.02562 * 14 13 12 41 41 H 1.08001 * 120.13057 * 180.02562 * 15 14 13 42 42 H 0.96998 * 119.99656 * 179.97438 * 20 19 17 43 43 H 1.08002 * 125.98544 * 180.10126 * 27 26 25 44 44 H 1.07998 * 126.57993 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9064 1.0229 0.0000 4 6 2.0641 -0.7655 -1.2298 5 6 2.2571 -2.1876 -0.6565 6 1 1.3714 -2.7960 -0.8397 7 7 3.4418 -2.8199 -1.2421 8 6 3.5304 -4.1635 -1.2981 9 8 2.6291 -4.8493 -0.8641 10 6 4.7494 -4.8138 -1.9000 11 6 4.5998 -6.3122 -1.8418 12 6 5.1492 -7.0214 -0.7980 13 6 5.0180 -8.4002 -0.7449 14 6 4.3338 -9.0809 -1.7404 15 6 3.7772 -8.3926 -2.7939 16 6 3.9028 -6.9923 -2.8574 17 6 3.3338 -6.2744 -3.9344 18 1 2.9901 -5.2613 -3.7864 19 6 3.2159 -6.8765 -5.1922 20 7 2.3966 -6.3778 -6.0819 21 14 4.2283 -8.3922 -5.6006 22 1 3.4202 -9.6112 -5.3434 23 1 4.6231 -8.3529 -7.0316 24 1 5.4463 -8.4175 -4.7515 25 6 2.4540 -1.9668 0.8300 26 7 2.8913 -2.5712 1.9056 27 6 2.7759 -1.7462 2.9553 28 6 2.2467 -0.5885 2.5189 29 7 2.0402 -0.7296 1.1699 30 1 -0.3633 -1.0272 0.0340 31 1 -0.3633 0.5430 0.8724 32 1 -0.3633 0.4840 -0.9066 33 1 3.0132 -0.3487 -1.5668 34 1 1.3315 -0.7665 -2.0370 35 1 4.1625 -2.2714 -1.5895 36 1 5.6350 -4.5147 -1.3395 37 1 4.8534 -4.4994 -2.9385 38 1 5.6849 -6.5015 -0.0174 39 1 5.4527 -8.9487 0.0776 40 1 4.2372 -10.1553 -1.6887 41 1 3.2443 -8.9247 -3.5681 42 1 2.3152 -6.7949 -6.9538 43 1 3.0585 -1.9710 3.9732 44 1 2.0264 0.2840 3.1160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361818861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:27 Heat of formation + Delta-G solvation = 34.241937 kcal Electronic energy + Delta-G solvation = -27220.072484 eV Core-core repulsion = 23523.327173 eV Total energy + Delta-G solvation = -3696.745311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.50744 -40.78478 -39.35028 -38.01388 -35.45670 -35.34822 -33.55732 -32.15541 -31.84325 -30.97054 -29.22498 -28.32347 -26.71144 -25.59820 -23.22283 -22.99234 -22.43720 -21.62241 -21.04332 -20.77111 -19.21994 -18.14462 -17.84254 -17.41838 -17.00258 -16.55178 -16.22709 -15.96124 -15.53625 -15.50793 -15.31413 -14.92773 -14.85722 -14.50923 -14.46817 -14.21550 -13.89585 -13.77556 -13.65620 -13.32471 -13.11507 -13.07940 -12.67275 -12.65547 -12.49910 -12.38194 -12.05785 -11.96976 -11.51158 -11.35233 -10.95176 -10.85554 -10.79809 -10.60180 -10.22617 -9.38227 -9.36511 -9.26003 -8.83450 -6.41007 0.80948 0.91965 1.03762 1.30084 1.41754 1.51940 1.70863 1.86796 2.07257 2.17456 2.42423 2.67787 2.92169 3.38314 3.54870 3.60182 3.75824 4.05171 4.08211 4.11497 4.22535 4.30703 4.43123 4.48177 4.50853 4.59760 4.65166 4.68206 4.74011 4.75077 4.83175 4.86001 4.95564 4.99475 5.17000 5.18779 5.35610 5.40477 5.46110 5.69829 5.87059 5.89208 5.97208 6.08036 6.12759 6.31895 6.47648 6.62730 6.83691 6.94272 7.21423 7.44655 8.24036 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.003548 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.807424 B = 7888.942840 C = 9110.772388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.136 0.864 4 C -0.120 4.120 5 C 0.220 3.780 6 H 0.082 0.918 7 N -0.712 5.712 8 C 0.522 3.478 9 O -0.568 6.568 10 C -0.072 4.072 11 C -0.171 4.171 12 C -0.081 4.081 13 C -0.232 4.232 14 C -0.092 4.092 15 C -0.257 4.257 16 C 0.085 3.915 17 C -0.468 4.468 18 H 0.062 0.938 19 C 0.052 3.948 20 N -0.849 5.849 21 Si 0.959 3.041 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.252 1.252 25 C 0.153 3.847 26 N -0.523 5.523 27 C -0.058 4.058 28 C -0.019 4.019 29 N -0.470 5.470 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.417 0.583 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.291 0.709 43 H 0.186 0.814 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 18.188 8.474 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 H 0.154 0.846 4 C -0.158 4.158 5 C 0.112 3.888 6 H 0.100 0.900 7 N -0.366 5.366 8 C 0.310 3.690 9 O -0.445 6.445 10 C -0.111 4.111 11 C -0.172 4.172 12 C -0.099 4.099 13 C -0.251 4.251 14 C -0.110 4.110 15 C -0.277 4.277 16 C 0.083 3.917 17 C -0.497 4.497 18 H 0.080 0.920 19 C -0.162 4.162 20 N -0.475 5.475 21 Si 0.784 3.216 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.176 1.176 25 C -0.112 4.112 26 N -0.243 5.243 27 C -0.206 4.206 28 C -0.152 4.152 29 N -0.154 5.154 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.254 0.746 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.203 0.797 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.693 17.192 8.540 19.209 hybrid contribution -0.155 -0.046 -0.214 0.268 sum 0.538 17.146 8.326 19.068 Atomic orbital electron populations 1.22211 0.92047 1.02486 1.05100 1.22321 0.96173 0.97922 0.80589 0.84601 1.23230 1.05886 0.89194 0.97508 1.19921 0.89883 0.96208 0.82768 0.90036 1.45743 1.21860 1.06163 1.62850 1.21144 0.88650 0.82165 0.77013 1.90678 1.41837 1.64004 1.47971 1.20326 0.95544 0.92409 1.02856 1.19533 1.04656 0.94162 0.98875 1.20869 0.98414 0.94545 0.96079 1.20835 1.08358 0.94374 1.01542 1.20962 0.96720 0.99172 0.94106 1.21154 1.09724 0.95115 1.01671 1.17722 0.89209 0.91866 0.92931 1.19324 1.35419 1.01156 0.93845 0.91971 1.26697 0.93866 0.99788 0.95859 1.69726 1.29549 1.40999 1.07263 0.85577 0.80762 0.78306 0.76965 1.19618 1.20298 1.17588 1.24812 1.03630 0.85247 0.97469 1.69836 1.22051 1.33657 0.98724 1.22822 1.07503 0.91409 0.98864 1.22911 1.07400 1.02695 0.82209 1.46858 1.45751 1.14713 1.08070 0.94055 0.90977 0.87257 0.86217 0.85249 0.74581 0.86862 0.87891 0.86388 0.85711 0.86083 0.88995 0.89876 0.79678 0.77080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.46 71.98 0.68 -1.16 16 2 C 0.13 1.67 4.13 45.37 0.19 1.86 16 3 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -1.72 6.38 31.59 0.20 -1.52 16 5 C 0.22 6.18 3.28 45.04 0.15 6.33 16 6 H 0.08 2.85 7.55 -2.39 -0.02 2.83 16 7 N -0.71 -21.57 5.13 -442.27 -2.27 -23.84 16 8 C 0.52 21.64 7.43 87.66 0.65 22.29 16 9 O -0.57 -29.96 15.68 -3.04 -0.05 -30.01 16 10 C -0.07 -2.83 5.19 29.10 0.15 -2.68 16 11 C -0.17 -8.16 4.43 -19.41 -0.09 -8.24 16 12 C -0.08 -3.58 9.66 22.22 0.21 -3.36 16 13 C -0.23 -9.97 10.05 22.46 0.23 -9.75 16 14 C -0.09 -4.16 10.02 22.22 0.22 -3.94 16 15 C -0.26 -13.27 7.16 22.73 0.16 -13.11 16 16 C 0.09 4.56 5.10 -21.29 -0.11 4.45 16 17 C -0.47 -26.38 8.55 23.46 0.20 -26.18 16 18 H 0.06 3.71 7.00 -2.91 -0.02 3.69 16 19 C 0.05 2.83 5.41 85.26 0.46 3.29 16 20 N -0.85 -46.67 13.93 21.83 0.30 -46.37 16 21 Si 0.96 44.10 24.52 68.60 1.68 45.78 16 22 H -0.27 -12.19 6.71 99.48 0.67 -11.52 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.25 -11.81 6.86 99.48 0.68 -11.13 16 25 C 0.15 4.75 8.22 138.36 1.14 5.89 16 26 N -0.52 -19.22 11.26 -187.33 -2.11 -21.33 16 27 C -0.06 -1.59 11.86 83.52 0.99 -0.60 16 28 C -0.02 -0.39 12.04 83.01 1.00 0.60 16 29 N -0.47 -10.15 3.25 -486.97 -1.58 -11.73 16 30 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.12 1.16 7.82 -2.39 -0.02 1.14 16 34 H 0.13 1.41 7.89 -2.39 -0.02 1.40 16 35 H 0.42 9.15 8.43 -92.71 -0.78 8.37 16 36 H 0.11 3.58 8.05 -2.39 -0.02 3.56 16 37 H 0.10 3.98 7.14 -2.39 -0.02 3.96 16 38 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 41 H 0.09 4.75 4.76 -2.91 -0.01 4.73 16 42 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16 43 H 0.19 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.21 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -83.45 362.63 2.60 -80.85 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.19 Total: 32.47 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 6.44 Total: -25.83 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -5.66 Total: -103.27 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.01 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.68 Total: 45.78 kcal Total: -83.45 2.60 -80.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361818861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.092 kcal (2) G-P(sol) polarization free energy of solvation -83.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds