Wall clock time and date at job start Tue Mar 31 2020 15:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47358 * 2 1 4 4 C 1.50701 * 109.47332 * 120.00683 * 2 1 3 5 5 C 1.38650 * 120.78424 * 330.91803 * 4 2 1 6 6 C 1.38210 * 119.15971 * 179.74951 * 5 4 2 7 7 N 1.31864 * 120.76545 * 0.25553 * 6 5 4 8 8 C 1.31877 * 121.72475 * 359.97438 * 7 6 5 9 9 C 1.38203 * 120.76318 * 359.97384 * 8 7 6 10 10 N 1.46502 * 109.46528 * 239.99980 * 2 1 3 11 11 C 1.46501 * 120.00288 * 305.22078 * 10 2 1 12 12 C 1.34779 * 119.99875 * 125.22854 * 10 2 1 13 13 O 1.21589 * 119.99774 * 359.97438 * 12 10 2 14 14 N 1.34775 * 120.00267 * 180.02562 * 12 10 2 15 15 C 1.39956 * 120.00248 * 174.98206 * 14 12 10 16 16 C 1.39285 * 119.94816 * 147.27725 * 15 14 12 17 17 C 1.38486 * 120.42575 * 179.97438 * 16 15 14 18 18 C 1.37674 * 120.32803 * 0.02562 * 17 16 15 19 19 C 1.40745 * 119.88112 * 0.02562 * 18 17 16 20 20 C 1.41410 * 120.21404 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00384 * 145.86387 * 20 19 18 22 22 C 1.39929 * 119.99593 * 325.86700 * 20 19 18 23 23 N 1.30827 * 120.00175 * 359.22068 * 22 20 19 24 24 Si 1.86799 * 119.99758 * 179.21923 * 22 20 19 25 25 H 1.48494 * 109.47116 * 90.00224 * 24 22 20 26 26 H 1.48502 * 109.47192 * 210.00064 * 24 22 20 27 27 H 1.48502 * 109.47423 * 329.99597 * 24 22 20 28 28 C 1.38240 * 119.94445 * 326.99826 * 15 14 12 29 29 H 1.09002 * 109.47677 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47056 * 299.99825 * 1 2 3 31 31 H 1.08996 * 109.47238 * 59.99497 * 1 2 3 32 32 H 1.08005 * 120.42449 * 0.02735 * 5 4 2 33 33 H 1.08001 * 119.62049 * 180.22873 * 6 5 4 34 34 H 1.08001 * 119.61706 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.41617 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.46570 * 95.02366 * 11 10 2 37 37 H 1.08998 * 109.47455 * 215.01889 * 11 10 2 38 38 H 1.08993 * 109.46965 * 335.02570 * 11 10 2 39 39 H 0.97004 * 119.99818 * 354.97667 * 14 12 10 40 40 H 1.07998 * 119.78756 * 359.97438 * 16 15 14 41 41 H 1.08010 * 119.83452 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.06284 * 179.97438 * 18 17 16 43 43 H 0.97007 * 119.99818 * 180.02562 * 23 22 20 44 44 H 1.07998 * 120.15734 * 0.02803 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.2875 -0.7173 2.3998 6 6 1.7779 -1.3839 3.5067 7 7 2.9410 -2.0036 3.4605 8 6 3.6781 -2.0141 2.3670 9 6 3.2520 -1.3699 1.2210 10 7 2.0182 -0.6906 -1.1962 11 6 1.5724 -2.0555 -1.4873 12 6 2.8776 -0.0704 -2.0289 13 8 3.2473 1.0625 -1.7874 14 7 3.3263 -0.7055 -3.1296 15 6 4.1346 -0.0266 -4.0487 16 6 5.1195 -0.7168 -4.7512 17 6 5.9244 -0.0550 -5.6633 18 6 5.7600 1.2937 -5.8854 19 6 4.7695 2.0045 -5.1820 20 6 4.5948 3.3901 -5.4042 21 1 3.6078 3.8253 -5.3515 22 6 5.7009 4.1973 -5.6925 23 7 6.8984 3.6728 -5.7414 24 14 5.4674 6.0236 -6.0075 25 1 5.5740 6.7647 -4.7251 26 1 6.5155 6.5023 -6.9444 27 1 4.1273 6.2559 -6.6037 28 6 3.9501 1.3267 -4.2620 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.3340 -0.2119 2.4438 33 1 1.2022 -1.3971 4.4204 34 1 4.6254 -2.5328 2.3669 35 1 3.8600 -1.3824 0.3285 36 1 0.7238 -2.0225 -2.1706 37 1 2.3878 -2.6137 -1.9474 38 1 1.2740 -2.5456 -0.5607 39 1 3.0892 -1.6332 -3.2849 40 1 5.2564 -1.7749 -4.5836 41 1 6.6850 -0.5997 -6.2032 42 1 6.3904 1.8057 -6.5974 43 1 7.6652 4.2325 -5.9409 44 1 3.1840 1.8618 -3.7207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476610846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:00 Heat of formation + Delta-G solvation = 23.736275 kcal Electronic energy + Delta-G solvation = -26836.852419 eV Core-core repulsion = 23139.651549 eV Total energy + Delta-G solvation = -3697.200870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.96056 -40.98681 -39.30034 -37.51226 -36.22254 -35.03122 -33.88493 -32.24091 -31.72020 -30.98681 -29.58905 -27.95378 -27.23634 -25.59922 -24.23485 -23.58839 -22.79846 -21.98607 -20.63936 -19.78032 -18.99395 -18.15284 -17.51216 -17.33572 -16.94141 -16.53215 -16.44889 -16.31681 -16.20806 -15.19734 -15.01798 -14.88850 -14.69490 -14.58962 -14.43021 -14.25945 -13.90777 -13.63734 -13.56722 -13.34426 -13.00866 -12.88206 -12.85851 -12.55124 -12.44036 -12.33288 -12.21303 -11.98013 -11.61859 -11.30539 -11.01993 -10.75863 -10.56548 -10.47234 -10.10042 -9.82671 -9.30050 -8.65997 -8.49651 -6.39654 0.18449 0.20725 0.93142 1.01725 1.35530 1.48005 1.49707 1.55036 2.11949 2.23261 2.80105 2.84476 2.93074 3.44276 3.58343 3.72061 3.83038 4.09412 4.11575 4.16163 4.22310 4.31017 4.46812 4.56079 4.58865 4.61488 4.73522 4.78525 4.85051 4.89242 4.99039 5.06016 5.12633 5.14423 5.14670 5.17015 5.30236 5.35698 5.55574 5.70718 5.75387 5.83373 6.00147 6.09590 6.15526 6.39391 6.71666 6.91271 6.97487 7.00613 7.02652 7.53082 8.43140 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.002933 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.718128 B = 9545.860718 C =10083.424998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.188 3.812 3 H 0.085 0.915 4 C -0.055 4.055 5 C -0.158 4.158 6 C 0.093 3.907 7 N -0.511 5.511 8 C 0.091 3.909 9 C -0.167 4.167 10 N -0.616 5.616 11 C 0.073 3.927 12 C 0.695 3.305 13 O -0.616 6.616 14 N -0.667 5.667 15 C 0.170 3.830 16 C -0.240 4.240 17 C -0.095 4.095 18 C -0.187 4.187 19 C 0.086 3.914 20 C -0.504 4.504 21 H 0.064 0.936 22 C 0.029 3.971 23 N -0.841 5.841 24 Si 0.986 3.014 25 H -0.269 1.269 26 H -0.261 1.261 27 H -0.259 1.259 28 C -0.225 4.225 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.169 0.831 33 H 0.185 0.815 34 H 0.166 0.834 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.416 0.584 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.284 0.716 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.781 -13.229 12.665 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.084 3.916 3 H 0.103 0.897 4 C -0.064 4.064 5 C -0.177 4.177 6 C -0.063 4.063 7 N -0.220 5.220 8 C -0.065 4.065 9 C -0.187 4.187 10 N -0.353 5.353 11 C -0.069 4.069 12 C 0.397 3.603 13 O -0.495 6.495 14 N -0.316 5.316 15 C 0.076 3.924 16 C -0.261 4.261 17 C -0.114 4.114 18 C -0.207 4.207 19 C 0.083 3.917 20 C -0.535 4.535 21 H 0.082 0.918 22 C -0.183 4.183 23 N -0.469 5.469 24 Si 0.807 3.193 25 H -0.194 1.194 26 H -0.185 1.185 27 H -0.183 1.183 28 C -0.247 4.247 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.186 0.814 33 H 0.202 0.798 34 H 0.183 0.817 35 H 0.133 0.867 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.256 0.744 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.031 -12.840 13.557 22.213 hybrid contribution 0.080 1.065 -1.102 1.534 sum -11.952 -11.775 12.455 20.896 Atomic orbital electron populations 1.22150 0.90753 1.04127 1.03721 1.19836 0.96115 0.95663 0.80010 0.89710 1.20730 0.94260 0.95501 0.95956 1.22348 1.02182 1.00918 0.92295 1.23306 0.91739 0.92102 0.99181 1.67717 1.07143 1.18917 1.28248 1.22938 0.99396 0.96306 0.87877 1.21955 0.96998 0.99784 0.99996 1.47038 1.46835 1.17126 1.24286 1.21965 1.00989 0.80594 1.03353 1.16136 0.79657 0.84117 0.80354 1.90971 1.62810 1.19829 1.75874 1.42461 1.52342 1.15672 1.21163 1.17299 0.92406 0.91414 0.91267 1.20484 1.00091 0.99910 1.05652 1.20867 0.98418 0.94070 0.97996 1.21436 1.02729 0.93548 1.02968 1.17855 0.91303 0.93574 0.88940 1.19706 0.94896 0.93591 1.45266 0.91788 1.26694 0.94035 1.05727 0.91840 1.69838 0.99955 1.39241 1.37895 0.85157 0.79390 0.75895 0.78892 1.19444 1.18526 1.18264 1.21029 1.06299 0.94447 1.02890 0.89958 0.88605 0.92450 0.81381 0.79779 0.81705 0.86722 0.90735 0.90554 0.89040 0.74432 0.84884 0.85740 0.87513 0.90525 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.42 71.98 0.61 -1.57 16 2 C 0.19 4.23 3.05 44.25 0.14 4.37 16 3 H 0.09 2.57 6.91 -2.39 -0.02 2.55 16 4 C -0.06 -1.12 4.86 -19.67 -0.10 -1.21 16 5 C -0.16 -2.36 9.22 22.36 0.21 -2.15 16 6 C 0.09 1.50 11.18 84.68 0.95 2.44 16 7 N -0.51 -10.94 10.36 -195.84 -2.03 -12.97 16 8 C 0.09 1.93 11.18 84.68 0.95 2.88 16 9 C -0.17 -3.82 9.13 22.36 0.20 -3.61 16 10 N -0.62 -15.22 1.86 -844.86 -1.57 -16.79 16 11 C 0.07 1.10 8.74 127.77 1.12 2.21 16 12 C 0.70 25.29 7.95 179.05 1.42 26.72 16 13 O -0.62 -29.73 13.32 -4.00 -0.05 -29.78 16 14 N -0.67 -23.08 5.22 -317.32 -1.66 -24.74 16 15 C 0.17 7.65 6.28 38.10 0.24 7.89 16 16 C -0.24 -9.98 9.96 22.58 0.23 -9.76 16 17 C -0.09 -4.32 10.01 22.20 0.22 -4.10 16 18 C -0.19 -10.17 8.64 22.75 0.20 -9.98 16 19 C 0.09 5.01 5.53 -21.31 -0.12 4.89 16 20 C -0.50 -29.76 9.05 23.46 0.21 -29.55 16 21 H 0.06 3.73 7.85 -2.91 -0.02 3.70 16 22 C 0.03 1.57 5.38 85.25 0.46 2.03 16 23 N -0.84 -47.00 10.74 21.82 0.23 -46.76 16 24 Si 0.99 41.73 29.56 68.60 2.03 43.75 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 28 C -0.22 -12.25 8.40 22.85 0.19 -12.06 16 29 H 0.08 0.88 7.42 -2.39 -0.02 0.86 16 30 H 0.10 0.96 6.60 -2.39 -0.02 0.94 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.17 1.41 6.28 -2.91 -0.02 1.40 16 33 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.11 2.98 7.47 -2.91 -0.02 2.96 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.01 6.56 -2.39 -0.02 0.99 16 38 H 0.09 1.09 7.32 -2.39 -0.02 1.07 16 39 H 0.42 10.40 6.62 -92.71 -0.61 9.78 16 40 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 41 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.11 6.08 6.27 -2.91 -0.02 6.06 16 43 H 0.28 14.38 8.30 -92.70 -0.77 13.61 16 44 H 0.09 4.99 6.36 -2.91 -0.02 4.98 16 Total: -1.00 -77.84 361.85 4.49 -73.35 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.42 Total: 34.48 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 7.12 Total: -20.55 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -5.02 Total: -101.25 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -77.84 4.49 -73.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476610846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.087 kcal (2) G-P(sol) polarization free energy of solvation -77.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds