Wall clock time and date at job start Tue Mar 31 2020 15:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47086 * 2 1 4 4 C 1.50700 * 109.46876 * 120.00107 * 2 1 3 5 5 C 1.38235 * 120.00069 * 330.39387 * 4 2 1 6 6 C 1.38240 * 119.99726 * 179.97438 * 5 4 2 7 7 C 1.38228 * 120.00256 * 0.09313 * 6 5 4 8 8 C 1.38239 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.38234 * 120.00148 * 359.97438 * 8 7 6 10 10 N 1.46499 * 109.47269 * 240.00093 * 2 1 3 11 11 C 1.46503 * 119.99865 * 305.19085 * 10 2 1 12 12 C 1.34774 * 119.99815 * 125.18472 * 10 2 1 13 13 O 1.21581 * 120.00360 * 0.02562 * 12 10 2 14 14 N 1.34779 * 119.99762 * 179.97438 * 12 10 2 15 15 C 1.39463 * 119.99819 * 174.80768 * 14 12 10 16 16 C 1.38643 * 119.64761 * 185.27645 * 15 14 12 17 17 C 1.40818 * 118.67507 * 179.97438 * 16 15 14 18 18 C 1.41541 * 120.99766 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00139 * 212.20600 * 18 17 16 20 20 C 1.40036 * 119.99982 * 32.20925 * 18 17 16 21 21 N 1.30733 * 119.99997 * 6.41965 * 20 18 17 22 22 Si 1.86799 * 119.99825 * 186.41747 * 20 18 17 23 23 H 1.48504 * 109.47343 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46968 * 120.00189 * 22 20 18 25 25 H 1.48501 * 109.47278 * 240.00030 * 22 20 18 26 26 C 1.41166 * 118.00439 * 359.97438 * 17 16 15 27 27 C 1.36582 * 119.12829 * 0.02562 * 26 17 16 28 28 N 1.32079 * 121.25865 * 359.73632 * 27 26 17 29 29 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47446 * 299.99936 * 1 2 3 31 31 H 1.09001 * 109.46862 * 59.99621 * 1 2 3 32 32 H 1.08000 * 120.00174 * 0.09119 * 5 4 2 33 33 H 1.08003 * 119.99674 * 180.36535 * 6 5 4 34 34 H 1.08003 * 119.99975 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.99444 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.99966 * 179.97438 * 9 8 7 37 37 H 1.08994 * 109.47251 * 95.89969 * 11 10 2 38 38 H 1.08997 * 109.46612 * 215.89579 * 11 10 2 39 39 H 1.09003 * 109.46720 * 335.89487 * 11 10 2 40 40 H 0.96992 * 120.00144 * 354.80764 * 14 12 10 41 41 H 1.08003 * 120.66165 * 359.97438 * 16 15 14 42 42 H 0.97010 * 120.00237 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.43110 * 179.97438 * 26 17 16 44 44 H 1.08009 * 119.37233 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.2813 -0.6976 2.3910 6 6 1.7419 -1.3497 3.5195 7 6 2.9542 -2.0131 3.4881 8 6 3.7058 -2.0248 2.3279 9 6 3.2448 -1.3735 1.1991 10 7 2.0184 -0.6906 -1.1962 11 6 1.5732 -2.0557 -1.4869 12 6 2.8771 -0.0700 -2.0291 13 8 3.2468 1.0628 -1.7877 14 7 3.3268 -0.7055 -3.1293 15 6 4.1285 -0.0277 -4.0474 16 6 4.4963 -0.6523 -5.2292 17 6 5.3057 0.0512 -6.1418 18 6 5.7106 -0.5394 -7.3627 19 1 6.6677 -0.2856 -7.7942 20 6 4.8703 -1.4528 -8.0113 21 7 3.6627 -1.6657 -7.5582 22 14 5.4750 -2.3668 -9.5240 23 1 6.8672 -1.9507 -9.8303 24 1 5.4415 -3.8288 -9.2652 25 1 4.5972 -2.0483 -10.6787 26 6 5.7012 1.3631 -5.8025 27 6 5.2889 1.8954 -4.6141 28 7 4.5257 1.2083 -3.7835 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.3340 -0.1796 2.4154 33 1 1.1524 -1.3446 4.4245 34 1 3.3142 -2.5222 4.3699 35 1 4.6532 -2.5427 2.3036 36 1 3.8323 -1.3823 0.2929 37 1 0.7344 -2.0240 -2.1822 38 1 2.3936 -2.6181 -1.9327 39 1 1.2605 -2.5406 -0.5621 40 1 3.0929 -1.6342 -3.2826 41 1 4.1686 -1.6584 -5.4456 42 1 3.0806 -2.2987 -8.0072 43 1 6.3223 1.9380 -6.4734 44 1 5.5895 2.8987 -4.3503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672179666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:53 Heat of formation + Delta-G solvation = 48.625436 kcal Electronic energy + Delta-G solvation = -26847.417392 eV Core-core repulsion = 23151.295797 eV Total energy + Delta-G solvation = -3696.121595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.42279 -39.23390 -38.06141 -35.84569 -34.32253 -33.82079 -32.31309 -30.94401 -30.48467 -29.26886 -28.34138 -26.83836 -25.96257 -24.08564 -22.48255 -22.01028 -21.82036 -20.45367 -19.22065 -18.06762 -17.56259 -17.20752 -16.03080 -15.58566 -15.34174 -15.13249 -14.92961 -14.73372 -14.20368 -14.09214 -13.84019 -13.50777 -13.29006 -13.23658 -13.05651 -12.80346 -12.59712 -12.43029 -12.31757 -12.20895 -11.93119 -11.59587 -11.42536 -11.20877 -11.03575 -10.95251 -10.89149 -10.27553 -10.10254 -9.74444 -9.56694 -9.37559 -9.00015 -8.79891 -8.49020 -7.89855 -7.72289 -7.01314 -6.73457 -4.61106 1.24197 1.32414 2.68754 2.80300 2.88847 3.03435 3.08751 3.23408 3.72420 3.81200 3.88647 4.24055 4.60540 4.73163 4.78098 4.89452 5.00232 5.09409 5.12775 5.26219 5.35974 5.46289 5.49127 5.57190 5.67639 5.68434 5.78742 5.90316 5.95597 5.95978 6.07499 6.34573 6.41427 6.46178 6.54414 6.61132 6.76464 6.83725 6.91450 6.96805 7.12874 7.23087 7.41063 7.48974 7.88050 8.08801 8.33759 8.46842 8.72977 8.78668 9.14607 9.71009 10.15848 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.002771 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.761193 B =10103.605322 C =10424.916616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.194 3.806 3 H 0.115 0.885 4 C -0.091 4.091 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.126 4.126 8 C -0.120 4.120 9 C -0.099 4.099 10 N -0.631 5.631 11 C 0.080 3.920 12 C 0.694 3.306 13 O -0.530 6.530 14 N -0.666 5.666 15 C 0.352 3.648 16 C -0.235 4.235 17 C 0.147 3.853 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.914 3.086 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.274 1.274 26 C -0.278 4.278 27 C 0.117 3.883 28 N -0.548 5.548 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.404 0.596 41 H 0.126 0.874 42 H 0.279 0.721 43 H 0.103 0.897 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 -5.255 15.430 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 H 0.132 0.868 4 C -0.092 4.092 5 C -0.135 4.135 6 C -0.141 4.141 7 C -0.144 4.144 8 C -0.138 4.138 9 C -0.117 4.117 10 N -0.371 5.371 11 C -0.064 4.064 12 C 0.395 3.605 13 O -0.401 6.401 14 N -0.315 5.315 15 C 0.126 3.874 16 C -0.261 4.261 17 C 0.138 3.862 18 C -0.492 4.492 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.428 5.428 22 Si 0.738 3.262 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.301 4.301 27 C -0.037 4.037 28 N -0.267 5.267 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.240 0.760 41 H 0.144 0.856 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.164 -4.137 16.370 18.342 hybrid contribution 0.258 -1.499 -1.656 2.248 sum -6.906 -5.636 14.715 17.204 Atomic orbital electron populations 1.22187 0.94329 1.02470 1.02630 1.19683 0.93555 0.97308 0.80529 0.86764 1.20319 0.95097 0.98391 0.95416 1.21071 0.99839 1.00023 0.92528 1.21095 0.96497 0.98349 0.98164 1.21131 0.95271 0.99993 0.97974 1.21172 0.99791 0.99729 0.93139 1.21054 0.95467 0.96683 0.98496 1.47142 1.48982 1.15767 1.25223 1.21649 0.99942 0.83138 1.01654 1.16027 0.79523 0.84814 0.80094 1.91003 1.59407 1.16450 1.73227 1.42701 1.52129 1.14822 1.21857 1.17997 0.91904 0.90266 0.87234 1.21524 1.09717 1.02070 0.92756 1.17584 0.87790 0.89441 0.91372 1.19561 1.03916 1.21124 1.04633 0.90057 1.25902 0.94149 0.95169 0.98965 1.69750 1.06094 1.28743 1.38195 0.86169 0.80093 0.79298 0.80595 1.18429 1.19805 1.19942 1.21761 1.10939 0.97269 1.00162 1.21506 0.93938 0.97688 0.90552 1.67221 1.18066 1.07023 1.34362 0.92125 0.91208 0.91676 0.85718 0.86257 0.86400 0.86236 0.86133 0.92650 0.91834 0.90880 0.75996 0.85589 0.90994 0.87922 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.41 37.16 0.31 -1.26 16 2 C 0.19 2.51 3.03 -69.08 -0.21 2.30 16 3 H 0.11 1.78 6.91 -51.93 -0.36 1.42 16 4 C -0.09 -1.09 4.86 -104.62 -0.51 -1.60 16 5 C -0.12 -1.16 9.14 -39.58 -0.36 -1.52 16 6 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 7 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 8 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 9 C -0.10 -1.26 8.99 -39.58 -0.36 -1.62 16 10 N -0.63 -9.14 1.79 -181.01 -0.32 -9.46 16 11 C 0.08 0.88 8.68 59.85 0.52 1.40 16 12 C 0.69 13.62 8.09 -86.92 -0.70 12.92 16 13 O -0.53 -12.61 13.94 5.29 0.07 -12.54 16 14 N -0.67 -13.39 5.27 -15.86 -0.08 -13.48 16 15 C 0.35 8.63 7.42 -154.68 -1.15 7.48 16 16 C -0.23 -5.97 8.57 -38.46 -0.33 -6.30 16 17 C 0.15 3.86 5.54 -106.55 -0.59 3.27 16 18 C -0.46 -11.86 9.11 -37.65 -0.34 -12.21 16 19 H 0.08 2.01 7.86 -52.48 -0.41 1.60 16 20 C 0.08 1.83 5.33 -17.35 -0.09 1.74 16 21 N -0.80 -19.92 10.93 55.55 0.61 -19.31 16 22 Si 0.91 18.11 29.56 -169.99 -5.03 13.09 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 C -0.28 -6.85 9.85 -39.07 -0.38 -7.23 16 27 C 0.12 2.84 11.10 -18.04 -0.20 2.64 16 28 N -0.55 -14.18 7.86 -12.75 -0.10 -14.29 16 29 H 0.06 0.54 7.39 -51.93 -0.38 0.16 16 30 H 0.07 0.56 6.51 -51.93 -0.34 0.22 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.12 0.99 6.15 -52.49 -0.32 0.67 16 33 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.75 7.29 -52.49 -0.38 1.36 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.67 6.61 -51.93 -0.34 0.32 16 39 H 0.07 0.69 7.28 -51.93 -0.38 0.31 16 40 H 0.40 6.79 6.52 -40.82 -0.27 6.52 16 41 H 0.13 3.18 6.45 -52.48 -0.34 2.84 16 42 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 43 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -31.90 362.79 -10.59 -42.49 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.62 Total: 12.87 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -5.59 Total: -4.85 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.10 Total: -56.53 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.90 -10.59 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672179666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.120 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds